Gvermi12028.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12028.t1
Unique NameGvermi12028.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length307
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3048384..3049393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28583.AMAG_08098T0
PFAMsQ_salvage
Max annot lvl4751|Fungi
GOsGO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008477,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016798,GO:0016799,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0101030,GO:1901360
Evalue4.74e-81
EggNOG OGsKOG2524@1|root,KOG2524@2759|Eukaryota,38KFD@33154|Opisthokonta,3NTVS@4751|Fungi
DescriptionPotential Queuosine, Q, salvage protein family
COG categoryH
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12028Gvermi12028Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3048384..3049393 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12028.t1Gvermi12028.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3048384..3049393 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12028.t1.start1Gvermi12028.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3048384..3048386 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12028.t1.CDS1Gvermi12028.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3048384..3048421 +
Gvermi12028.t1.CDS2Gvermi12028.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3048511..3049393 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12028.t1.exon1Gvermi12028.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3048384..3048421 +
Gvermi12028.t1.exon2Gvermi12028.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3048511..3049393 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12028.t1.intron1Gvermi12028.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3048422..3048510 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12028.t1.stop1Gvermi12028.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3049391..3049393 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12028.t1 ID=Gvermi12028.t1|Name=Gvermi12028.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=307bp
LHPASPSAQALEWIFTVDTLNFCFWTPSHVPPFTVLYRGRRHTGYWALCA
AVNRAMEEQIPMTDAHFLSTVDERTMAHVFRSATASPIPLLERRVQALNE
AGRVLKQKFNASVHCLVQSAHGSCQTLIQTLVCNFKSYDDSVALDALSAC
DSQRRRWAQQMQAERLYLLKRAQIVVADMWACFAGSDQYQFRDIHTLTMF
ADYRVPQVLVWLGALKYSPALMKELQAEVELQPGCLTEVQIRACSIHAVE
LIRAHLQQLQSRSDAQQLSRMPINSVLIDFLLWDYAAAHQHQLQHIPIHR
VRSVYY*
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spliced messenger RNA

>Gvermi12028.t1 ID=Gvermi12028.t1|Name=Gvermi12028.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=921bp|location=Sequence derived from alignment at ScGOVlb_3404:3048384..3049393+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCACCCCGCGTCCCCCTCCGCGCAAGCGCTAGAATGGATTTTCACCGT
CGACACGCTCAACTTTTGCTTCTGGACGCCGAGCCACGTGCCGCCGTTCA
CCGTGCTGTACCGGGGAAGGCGGCACACCGGCTACTGGGCGCTTTGCGCC
GCCGTGAACCGCGCCATGGAGGAGCAAATCCCCATGACCGACGCGCACTT
CCTCAGCACGGTCGATGAGCGCACGATGGCGCACGTGTTCAGGTCGGCAA
CCGCCTCGCCCATCCCGCTGCTCGAGCGCAGAGTGCAGGCGCTCAACGAG
GCCGGGCGCGTGCTCAAGCAAAAGTTCAACGCGTCCGTGCACTGCCTGGT
GCAGAGCGCGCACGGCAGCTGCCAGACGCTCATACAAACGCTCGTGTGCA
ATTTCAAGTCGTACGACGACTCGGTGGCGCTGGACGCGCTGAGCGCGTGC
GACAGCCAGCGGCGGCGATGGGCGCAGCAGATGCAAGCGGAGCGGCTGTA
CTTGTTGAAGCGCGCGCAGATTGTGGTGGCCGACATGTGGGCGTGCTTTG
CGGGCAGCGACCAGTACCAATTCCGCGACATTCACACGCTCACCATGTTT
GCCGACTACCGAGTTCCGCAAGTGCTCGTGTGGCTGGGTGCATTGAAATA
CTCGCCCGCCCTGATGAAAGAGCTGCAGGCGGAGGTTGAACTGCAGCCTG
GTTGCCTCACAGAGGTTCAGATTCGAGCGTGCTCCATTCATGCCGTCGAG
CTCATTCGAGCGCACCTGCAACAGCTGCAGTCGCGCAGCGATGCACAACA
ACTCAGTCGCATGCCAATCAATTCCGTGCTCATTGATTTTTTGTTGTGGG
ACTACGCTGCTGCTCACCAACACCAACTGCAGCACATTCCCATACACCGC
GTTCGATCTGTTTACTACTGA
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protein sequence of Gvermi12028.t1

>Gvermi12028.t1 ID=Gvermi12028.t1|Name=Gvermi12028.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=307bp
LHPASPSAQALEWIFTVDTLNFCFWTPSHVPPFTVLYRGRRHTGYWALCA
AVNRAMEEQIPMTDAHFLSTVDERTMAHVFRSATASPIPLLERRVQALNE
AGRVLKQKFNASVHCLVQSAHGSCQTLIQTLVCNFKSYDDSVALDALSAC
DSQRRRWAQQMQAERLYLLKRAQIVVADMWACFAGSDQYQFRDIHTLTMF
ADYRVPQVLVWLGALKYSPALMKELQAEVELQPGCLTEVQIRACSIHAVE
LIRAHLQQLQSRSDAQQLSRMPINSVLIDFLLWDYAAAHQHQLQHIPIHR
VRSVYY*
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mRNA from alignment at ScGOVlb_3404:3048384..3049393+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12028.t1 ID=Gvermi12028.t1|Name=Gvermi12028.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1010bp|location=Sequence derived from alignment at ScGOVlb_3404:3048384..3049393+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCACCCCGCGTCCCCCTCCGCGCAAGCGCTAGAATGGTCAGTGGCGCG
CGcccccccccctctcccccccccccccgcgccacgcgcgccgccaacgt
gctcacactccgcgccgcgcgcAGCAGGATTTTCACCGTCGACACGCTCA
ACTTTTGCTTCTGGACGCCGAGCCACGTGCCGCCGTTCACCGTGCTGTAC
CGGGGAAGGCGGCACACCGGCTACTGGGCGCTTTGCGCCGCCGTGAACCG
CGCCATGGAGGAGCAAATCCCCATGACCGACGCGCACTTCCTCAGCACGG
TCGATGAGCGCACGATGGCGCACGTGTTCAGGTCGGCAACCGCCTCGCCC
ATCCCGCTGCTCGAGCGCAGAGTGCAGGCGCTCAACGAGGCCGGGCGCGT
GCTCAAGCAAAAGTTCAACGCGTCCGTGCACTGCCTGGTGCAGAGCGCGC
ACGGCAGCTGCCAGACGCTCATACAAACGCTCGTGTGCAATTTCAAGTCG
TACGACGACTCGGTGGCGCTGGACGCGCTGAGCGCGTGCGACAGCCAGCG
GCGGCGATGGGCGCAGCAGATGCAAGCGGAGCGGCTGTACTTGTTGAAGC
GCGCGCAGATTGTGGTGGCCGACATGTGGGCGTGCTTTGCGGGCAGCGAC
CAGTACCAATTCCGCGACATTCACACGCTCACCATGTTTGCCGACTACCG
AGTTCCGCAAGTGCTCGTGTGGCTGGGTGCATTGAAATACTCGCCCGCCC
TGATGAAAGAGCTGCAGGCGGAGGTTGAACTGCAGCCTGGTTGCCTCACA
GAGGTTCAGATTCGAGCGTGCTCCATTCATGCCGTCGAGCTCATTCGAGC
GCACCTGCAACAGCTGCAGTCGCGCAGCGATGCACAACAACTCAGTCGCA
TGCCAATCAATTCCGTGCTCATTGATTTTTTGTTGTGGGACTACGCTGCT
GCTCACCAACACCAACTGCAGCACATTCCCATACACCGCGTTCGATCTGT
TTACTACTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3048384..3049393+

>Gvermi12028.t1 ID=Gvermi12028.t1|Name=Gvermi12028.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=921bp|location=Sequence derived from alignment at ScGOVlb_3404:3048384..3049393+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCACCCCGCGTCCCCCTCCGCGCAAGCGCTAGAATGGATTTTCACCGT
CGACACGCTCAACTTTTGCTTCTGGACGCCGAGCCACGTGCCGCCGTTCA
CCGTGCTGTACCGGGGAAGGCGGCACACCGGCTACTGGGCGCTTTGCGCC
GCCGTGAACCGCGCCATGGAGGAGCAAATCCCCATGACCGACGCGCACTT
CCTCAGCACGGTCGATGAGCGCACGATGGCGCACGTGTTCAGGTCGGCAA
CCGCCTCGCCCATCCCGCTGCTCGAGCGCAGAGTGCAGGCGCTCAACGAG
GCCGGGCGCGTGCTCAAGCAAAAGTTCAACGCGTCCGTGCACTGCCTGGT
GCAGAGCGCGCACGGCAGCTGCCAGACGCTCATACAAACGCTCGTGTGCA
ATTTCAAGTCGTACGACGACTCGGTGGCGCTGGACGCGCTGAGCGCGTGC
GACAGCCAGCGGCGGCGATGGGCGCAGCAGATGCAAGCGGAGCGGCTGTA
CTTGTTGAAGCGCGCGCAGATTGTGGTGGCCGACATGTGGGCGTGCTTTG
CGGGCAGCGACCAGTACCAATTCCGCGACATTCACACGCTCACCATGTTT
GCCGACTACCGAGTTCCGCAAGTGCTCGTGTGGCTGGGTGCATTGAAATA
CTCGCCCGCCCTGATGAAAGAGCTGCAGGCGGAGGTTGAACTGCAGCCTG
GTTGCCTCACAGAGGTTCAGATTCGAGCGTGCTCCATTCATGCCGTCGAG
CTCATTCGAGCGCACCTGCAACAGCTGCAGTCGCGCAGCGATGCACAACA
ACTCAGTCGCATGCCAATCAATTCCGTGCTCATTGATTTTTTGTTGTGGG
ACTACGCTGCTGCTCACCAACACCAACTGCAGCACATTCCCATACACCGC
GTTCGATCTGTTTACTACTGA
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