Gvermi12020.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12020.t1
Unique NameGvermi12020.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length538
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3020231..3021844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog161934.XP_010693197.1
PFAMsBRAP2,zf-RING_2,zf-UBP
Max annot lvl35493|Streptophyta
KEGG koko:K10632
KEGG Pathwayko04014,map04014
GOsGO:0000151,GO:0000165,GO:0003674,GO:0003824,GO:0004842,GO:0005048,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005829,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0008139,GO:0008150,GO:0008152,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0012505,GO:0016020,GO:0016310,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0023014,GO:0023051,GO:0023052,GO:0023057,GO:0031090,GO:0031965,GO:0031967,GO:0031975,GO:0032446,GO:0032991,GO:0033218,GO:0035556,GO:0036211,GO:0042277,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1902494,GO:1990234
Evalue2.82e-58
EggNOG OGsKOG0804@1|root,KOG0804@2759|Eukaryota,37HX1@33090|Viridiplantae,3G7U7@35493|Streptophyta
EC2.3.2.27
DescriptionBrca1-associated protein
COG categoryO
BRITEko00000,ko00001,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12020Gvermi12020Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3020231..3021844 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12020.t1.stop1Gvermi12020.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3020231..3020233 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12020.t1.CDS1Gvermi12020.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3020231..3021844 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12020.t1.exon1Gvermi12020.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3020231..3021844 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12020.t1.start1Gvermi12020.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3021842..3021844 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12020.t1Gvermi12020.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3020231..3021844 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12020.t1 ID=Gvermi12020.t1|Name=Gvermi12020.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=538bp
MSTPSSQPPIHSQPGRADDEPYRTMVPVTNNATVLPPSAPPQSQLPSSKP
PEQTVPAHETIAFETGNPETHSTIHGTLDLAPVSNDSPVIVVESVPGLMT
SPDFCIFVRSFFESILFIRPLRLKTERNRYIVILKFRTPEQAIEFVKAFD
GRHFLQGLVQEACILRTVNVIRFDGAPKNPSFPASSMFPEEEAEELRSSC
PVCLDPLNACSKALVTTFCNHTMHADCLAQWDLNRCPVCRHIHELTPEAS
TCMNCDNREDLWMCIVCAYVGCGFYKKKHAHAHFAETQHPFAMNVEDCIF
WSGEKVPQGSVWDYVSERFVNRLLSSDDGKVVEVVHDVARGNAAASSSAA
ATACCTANEGIGIVEDEQDRALQAAVYASRMDVVVDEYRAKMERMETEHA
AETAKFTQEISCLRNEVAHLHRLRKNFHKKSVDTEKELKSLKDKNAFLKS
LNETLLRDKQAWNAEVEKLTQKLAGVQTEKQGLEEQLRDLMMHLEAQSRI
VGSSEACRSDISELHGGDVVRVGPSPRERLAMKTNRR*
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spliced messenger RNA

>Gvermi12020.t1 ID=Gvermi12020.t1|Name=Gvermi12020.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1614bp|location=Sequence derived from alignment at ScGOVlb_3404:3020231..3021844- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTACACCGTCCTCGCAGCCCCCTATCCATTCGCAGCCGGGTCGTGC
AGATGACGAACCATACCGAACAATGGTGCCTGTTACAAACAACGCCACCG
TGCTTCCCCCTTCGGCCCCTCCGCAATCACAGTTACCCAGCTCCAAACCA
CCTGAGCAAACCGTCCCAGCACACGAAACCATTGCCTTCGAGACAGGAAA
CCCTGAAACTCACTCTACTATTCATGGCACTCTTGATTTAGCACCTGTTT
CCAATGATTCTCCTGTAATCGTTGTCGAATCAGTTCCAGGGTTGATGACA
TCTCCGGACTTTTGCATATTTGTCCGTTCTTTCTTTGAGTCTATTTTATT
TATTCGTCCCTTGCGCTTGAAAACCGAAAGAAATCGCTACATAGTGATCC
TCAAATTTCGAACCCCTGAGCAAGCTATCGAATTTGTCAAAGCATTTGAT
GGCAGACACTTCCTCCAGGGTCTTGTTCAAGAGGCATGTATCCTTCGAAC
TGTTAATGTTATACGATTCGACGGGGCTCCTAAGAACCCCAGTTTCCCGG
CGTCGTCTATGTTTCCGGAAGAGGAAGCCGAGGAACTACGTTCATCCTGT
CCAGTGTGTTTAGATCCTCTCAATGCATGTTCCAAGGCACTAGTAACCAC
ATTCTGCAACCACACCATGCACGCCGATTGCCTGGCACAGTGGGATCTTA
ACCGATGTCCCGTCTGTCGACACATACACGAACTCACCCCAGAGGCATCA
ACCTGTATGAACTGCGACAACCGGGAGGACCTCTGGATGTGTATTGTATG
TGCGTACGTTGGATGCGGCTTTTACAAGAAGAAGCATGCTCACGCGCACT
TTGCTGAGACGCAGCATCCGTTTGCAATGAATGTGGAGGACTGCATCTTT
TGGAGCGGGGAGAAGGTCCCCCAGGGATCCGTATGGGACTACGTGTCCGA
AAGATTTGTCAATCGGCTGCTCAGTAGTGACGATGGCAAAGTGGTCGAAG
TCGTGCACGACGTCGCCCGAGGGAATGCGGCTGCGTCCAGTTCGGCGGCT
GCTACCGCTTGCTGTACTGCGAATGAGGGCATCGGCATTGTTGAAGATGA
ACAAGACCGGGCGCTGCAGGCCGCGGTTTATGCAAGTCGAATGGACGTTG
TTGTCGATGAGTATCGTGCCAAGATGGAACGAATGGAGACAGAGCATGCT
GCGGAAACGGCCAAATTCACACAAGAGATCAGTTGCCTGCGCAACGAAGT
AGCTCATCTTCACAGGCTCCGCAAGAATTTTCATAAGAAGTCAGTAGACA
CAGAAAAGGAATTGAAAAGTCTCAAGGACAAGAATGCGTTCCTAAAGAGC
TTGAACGAAACACTGCTTAGAGATAAACAAGCATGGAACGCTGAAGTAGA
GAAACTGACTCAGAAATTAGCTGGTGTACAAACTGAAAAGCAGGGCCTTG
AAGAACAGTTGAGGGACCTTATGATGCACTTGGAAGCTCAGTCAAGAATC
GTTGGGTCTTCTGAAGCATGTCGGTCAGACATATCCGAATTACACGGTGG
AGACGTCGTGCGCGTCGGGCCGTCACCTCGCGAACGTCTGGCAATGAAGA
CAAATCGACGTTGA
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protein sequence of Gvermi12020.t1

>Gvermi12020.t1 ID=Gvermi12020.t1|Name=Gvermi12020.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=538bp
MSTPSSQPPIHSQPGRADDEPYRTMVPVTNNATVLPPSAPPQSQLPSSKP
PEQTVPAHETIAFETGNPETHSTIHGTLDLAPVSNDSPVIVVESVPGLMT
SPDFCIFVRSFFESILFIRPLRLKTERNRYIVILKFRTPEQAIEFVKAFD
GRHFLQGLVQEACILRTVNVIRFDGAPKNPSFPASSMFPEEEAEELRSSC
PVCLDPLNACSKALVTTFCNHTMHADCLAQWDLNRCPVCRHIHELTPEAS
TCMNCDNREDLWMCIVCAYVGCGFYKKKHAHAHFAETQHPFAMNVEDCIF
WSGEKVPQGSVWDYVSERFVNRLLSSDDGKVVEVVHDVARGNAAASSSAA
ATACCTANEGIGIVEDEQDRALQAAVYASRMDVVVDEYRAKMERMETEHA
AETAKFTQEISCLRNEVAHLHRLRKNFHKKSVDTEKELKSLKDKNAFLKS
LNETLLRDKQAWNAEVEKLTQKLAGVQTEKQGLEEQLRDLMMHLEAQSRI
VGSSEACRSDISELHGGDVVRVGPSPRERLAMKTNRR*
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mRNA from alignment at ScGOVlb_3404:3020231..3021844-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12020.t1 ID=Gvermi12020.t1|Name=Gvermi12020.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1614bp|location=Sequence derived from alignment at ScGOVlb_3404:3020231..3021844- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTACACCGTCCTCGCAGCCCCCTATCCATTCGCAGCCGGGTCGTGC
AGATGACGAACCATACCGAACAATGGTGCCTGTTACAAACAACGCCACCG
TGCTTCCCCCTTCGGCCCCTCCGCAATCACAGTTACCCAGCTCCAAACCA
CCTGAGCAAACCGTCCCAGCACACGAAACCATTGCCTTCGAGACAGGAAA
CCCTGAAACTCACTCTACTATTCATGGCACTCTTGATTTAGCACCTGTTT
CCAATGATTCTCCTGTAATCGTTGTCGAATCAGTTCCAGGGTTGATGACA
TCTCCGGACTTTTGCATATTTGTCCGTTCTTTCTTTGAGTCTATTTTATT
TATTCGTCCCTTGCGCTTGAAAACCGAAAGAAATCGCTACATAGTGATCC
TCAAATTTCGAACCCCTGAGCAAGCTATCGAATTTGTCAAAGCATTTGAT
GGCAGACACTTCCTCCAGGGTCTTGTTCAAGAGGCATGTATCCTTCGAAC
TGTTAATGTTATACGATTCGACGGGGCTCCTAAGAACCCCAGTTTCCCGG
CGTCGTCTATGTTTCCGGAAGAGGAAGCCGAGGAACTACGTTCATCCTGT
CCAGTGTGTTTAGATCCTCTCAATGCATGTTCCAAGGCACTAGTAACCAC
ATTCTGCAACCACACCATGCACGCCGATTGCCTGGCACAGTGGGATCTTA
ACCGATGTCCCGTCTGTCGACACATACACGAACTCACCCCAGAGGCATCA
ACCTGTATGAACTGCGACAACCGGGAGGACCTCTGGATGTGTATTGTATG
TGCGTACGTTGGATGCGGCTTTTACAAGAAGAAGCATGCTCACGCGCACT
TTGCTGAGACGCAGCATCCGTTTGCAATGAATGTGGAGGACTGCATCTTT
TGGAGCGGGGAGAAGGTCCCCCAGGGATCCGTATGGGACTACGTGTCCGA
AAGATTTGTCAATCGGCTGCTCAGTAGTGACGATGGCAAAGTGGTCGAAG
TCGTGCACGACGTCGCCCGAGGGAATGCGGCTGCGTCCAGTTCGGCGGCT
GCTACCGCTTGCTGTACTGCGAATGAGGGCATCGGCATTGTTGAAGATGA
ACAAGACCGGGCGCTGCAGGCCGCGGTTTATGCAAGTCGAATGGACGTTG
TTGTCGATGAGTATCGTGCCAAGATGGAACGAATGGAGACAGAGCATGCT
GCGGAAACGGCCAAATTCACACAAGAGATCAGTTGCCTGCGCAACGAAGT
AGCTCATCTTCACAGGCTCCGCAAGAATTTTCATAAGAAGTCAGTAGACA
CAGAAAAGGAATTGAAAAGTCTCAAGGACAAGAATGCGTTCCTAAAGAGC
TTGAACGAAACACTGCTTAGAGATAAACAAGCATGGAACGCTGAAGTAGA
GAAACTGACTCAGAAATTAGCTGGTGTACAAACTGAAAAGCAGGGCCTTG
AAGAACAGTTGAGGGACCTTATGATGCACTTGGAAGCTCAGTCAAGAATC
GTTGGGTCTTCTGAAGCATGTCGGTCAGACATATCCGAATTACACGGTGG
AGACGTCGTGCGCGTCGGGCCGTCACCTCGCGAACGTCTGGCAATGAAGA
CAAATCGACGTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3020231..3021844-

>Gvermi12020.t1 ID=Gvermi12020.t1|Name=Gvermi12020.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1614bp|location=Sequence derived from alignment at ScGOVlb_3404:3020231..3021844- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTACACCGTCCTCGCAGCCCCCTATCCATTCGCAGCCGGGTCGTGC
AGATGACGAACCATACCGAACAATGGTGCCTGTTACAAACAACGCCACCG
TGCTTCCCCCTTCGGCCCCTCCGCAATCACAGTTACCCAGCTCCAAACCA
CCTGAGCAAACCGTCCCAGCACACGAAACCATTGCCTTCGAGACAGGAAA
CCCTGAAACTCACTCTACTATTCATGGCACTCTTGATTTAGCACCTGTTT
CCAATGATTCTCCTGTAATCGTTGTCGAATCAGTTCCAGGGTTGATGACA
TCTCCGGACTTTTGCATATTTGTCCGTTCTTTCTTTGAGTCTATTTTATT
TATTCGTCCCTTGCGCTTGAAAACCGAAAGAAATCGCTACATAGTGATCC
TCAAATTTCGAACCCCTGAGCAAGCTATCGAATTTGTCAAAGCATTTGAT
GGCAGACACTTCCTCCAGGGTCTTGTTCAAGAGGCATGTATCCTTCGAAC
TGTTAATGTTATACGATTCGACGGGGCTCCTAAGAACCCCAGTTTCCCGG
CGTCGTCTATGTTTCCGGAAGAGGAAGCCGAGGAACTACGTTCATCCTGT
CCAGTGTGTTTAGATCCTCTCAATGCATGTTCCAAGGCACTAGTAACCAC
ATTCTGCAACCACACCATGCACGCCGATTGCCTGGCACAGTGGGATCTTA
ACCGATGTCCCGTCTGTCGACACATACACGAACTCACCCCAGAGGCATCA
ACCTGTATGAACTGCGACAACCGGGAGGACCTCTGGATGTGTATTGTATG
TGCGTACGTTGGATGCGGCTTTTACAAGAAGAAGCATGCTCACGCGCACT
TTGCTGAGACGCAGCATCCGTTTGCAATGAATGTGGAGGACTGCATCTTT
TGGAGCGGGGAGAAGGTCCCCCAGGGATCCGTATGGGACTACGTGTCCGA
AAGATTTGTCAATCGGCTGCTCAGTAGTGACGATGGCAAAGTGGTCGAAG
TCGTGCACGACGTCGCCCGAGGGAATGCGGCTGCGTCCAGTTCGGCGGCT
GCTACCGCTTGCTGTACTGCGAATGAGGGCATCGGCATTGTTGAAGATGA
ACAAGACCGGGCGCTGCAGGCCGCGGTTTATGCAAGTCGAATGGACGTTG
TTGTCGATGAGTATCGTGCCAAGATGGAACGAATGGAGACAGAGCATGCT
GCGGAAACGGCCAAATTCACACAAGAGATCAGTTGCCTGCGCAACGAAGT
AGCTCATCTTCACAGGCTCCGCAAGAATTTTCATAAGAAGTCAGTAGACA
CAGAAAAGGAATTGAAAAGTCTCAAGGACAAGAATGCGTTCCTAAAGAGC
TTGAACGAAACACTGCTTAGAGATAAACAAGCATGGAACGCTGAAGTAGA
GAAACTGACTCAGAAATTAGCTGGTGTACAAACTGAAAAGCAGGGCCTTG
AAGAACAGTTGAGGGACCTTATGATGCACTTGGAAGCTCAGTCAAGAATC
GTTGGGTCTTCTGAAGCATGTCGGTCAGACATATCCGAATTACACGGTGG
AGACGTCGTGCGCGTCGGGCCGTCACCTCGCGAACGTCTGGCAATGAAGA
CAAATCGACGTTGA
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