Gvermi12017.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12017.t1
Unique NameGvermi12017.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length255
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3016553..3017488 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44689.DDB0266485
PFAMsUNC-50
Max annot lvl554915|Amoebozoa
GOsGO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0012505,GO:0016020,GO:0016021,GO:0030173,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031984,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0098588,GO:0098791
Evalue6.44e-87
EggNOG OGsKOG3012@1|root,KOG3012@2759|Eukaryota,3X93T@554915|Amoebozoa
DescriptionUNC-50 family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12017Gvermi12017Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3016553..3017488 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12017.t1Gvermi12017.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3016553..3017488 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12017.t1.stop1Gvermi12017.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3016553..3016555 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12017.t1.CDS1Gvermi12017.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3016553..3017091 -
Gvermi12017.t1.CDS2Gvermi12017.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3017201..3017372 -
Gvermi12017.t1.CDS3Gvermi12017.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3017435..3017488 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12017.t1.exon1Gvermi12017.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3016553..3017091 -
Gvermi12017.t1.exon2Gvermi12017.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3017201..3017372 -
Gvermi12017.t1.exon3Gvermi12017.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3017435..3017488 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12017.t1.intron1Gvermi12017.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3017092..3017200 -
Gvermi12017.t1.intron2Gvermi12017.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3017373..3017434 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12017.t1.start1Gvermi12017.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3017486..3017488 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12017.t1 ID=Gvermi12017.t1|Name=Gvermi12017.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=255bp
MSSTISLPLYGAKSTNSSIGGSSLQMPEYVRRFFQYPQMDIDYTLWQMLY
LCISPSRVYRTTKYHKQTKNQWARDDPAFVAIMVYFMAVSSLGYAIAFHK
NFSGFFKTILYAVVVDFGLVGVLAATIGWYVANQYLRIESAGSHTTDQKV
EWLYAFDVHCNSFFPFFILLYVLQYFFLLLFMRDGYVFTFLANATYALAF
GYYFYVTFLGYDVLPFLQHTTVFLYPVIAVAFIFLVTTIVKFNLCVFVMN
SYFG*
back to top

spliced messenger RNA

>Gvermi12017.t1 ID=Gvermi12017.t1|Name=Gvermi12017.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=765bp|location=Sequence derived from alignment at ScGOVlb_3404:3016553..3017488- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGAGTACGATCAGCCTGCCACTTTATGGTGCGAAAAGCACAAACAG
TTCGATAGGAGGGAGCTCTCTTCAAATGCCCGAATATGTGCGCCGTTTCT
TCCAGTACCCCCAAATGGACATTGATTACACTTTATGGCAAATGCTGTAT
CTCTGCATATCGCCATCTCGCGTGTATCGAACTACCAAGTACCACAAGCA
AACAAAAAACCAATGGGCACGAGACGATCCCGCGTTCGTGGCCATAATGG
TGTACTTCATGGCGGTTTCGTCTCTCGGATATGCAATCGCTTTTCACAAG
AACTTTTCTGGTTTCTTCAAAACGATCCTTTATGCCGTTGTTGTCGATTT
TGGTCTCGTCGGTGTGTTAGCAGCCACTATTGGTTGGTATGTGGCCAATC
AATACTTGCGGATAGAAAGCGCAGGAAGTCACACAACCGATCAGAAGGTG
GAATGGCTCTATGCCTTTGATGTTCACTGCAATTCGTTCTTTCCTTTTTT
CATTCTTCTATACGTATTGCAATACTTCTTTCTCCTTCTTTTCATGCGGG
ATGGTTACGTGTTCACCTTTTTGGCCAATGCGACGTACGCTCTTGCGTTT
GGCTATTATTTTTACGTGACTTTTCTTGGCTATGACGTGCTCCCGTTCTT
GCAGCATACGACGGTATTCTTGTATCCCGTTATTGCTGTTGCCTTCATCT
TTCTTGTCACCACTATAGTTAAGTTTAATTTGTGTGTTTTCGTCATGAAT
TCATACTTCGGATAG
back to top

protein sequence of Gvermi12017.t1

>Gvermi12017.t1 ID=Gvermi12017.t1|Name=Gvermi12017.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=255bp
MSSTISLPLYGAKSTNSSIGGSSLQMPEYVRRFFQYPQMDIDYTLWQMLY
LCISPSRVYRTTKYHKQTKNQWARDDPAFVAIMVYFMAVSSLGYAIAFHK
NFSGFFKTILYAVVVDFGLVGVLAATIGWYVANQYLRIESAGSHTTDQKV
EWLYAFDVHCNSFFPFFILLYVLQYFFLLLFMRDGYVFTFLANATYALAF
GYYFYVTFLGYDVLPFLQHTTVFLYPVIAVAFIFLVTTIVKFNLCVFVMN
SYFG*
back to top

mRNA from alignment at ScGOVlb_3404:3016553..3017488-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12017.t1 ID=Gvermi12017.t1|Name=Gvermi12017.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=936bp|location=Sequence derived from alignment at ScGOVlb_3404:3016553..3017488- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGAGTACGATCAGCCTGCCACTTTATGGTGCGAAAAGCACAAACAG
TTCGGTACGTACACCGGGTCAACGGTTCTTGGCGTTTTACATCTCCATCG
CTGACATGGAACACAGATAGGAGGGAGCTCTCTTCAAATGCCCGAATATG
TGCGCCGTTTCTTCCAGTACCCCCAAATGGACATTGATTACACTTTATGG
CAAATGCTGTATCTCTGCATATCGCCATCTCGCGTGTATCGAACTACCAA
GTACCACAAGCAAACAAAAAACCAATGGGCACGAGACGGTATGTGGGCTA
TTAACTACTTCTGTTTTCTCAAAGAAGATTTTGTTTTGGGTTGTTGATCC
CTCCATGAGTTACTTCAATGCTAACATTAGACTTCAATGCATTGCAGATC
CCGCGTTCGTGGCCATAATGGTGTACTTCATGGCGGTTTCGTCTCTCGGA
TATGCAATCGCTTTTCACAAGAACTTTTCTGGTTTCTTCAAAACGATCCT
TTATGCCGTTGTTGTCGATTTTGGTCTCGTCGGTGTGTTAGCAGCCACTA
TTGGTTGGTATGTGGCCAATCAATACTTGCGGATAGAAAGCGCAGGAAGT
CACACAACCGATCAGAAGGTGGAATGGCTCTATGCCTTTGATGTTCACTG
CAATTCGTTCTTTCCTTTTTTCATTCTTCTATACGTATTGCAATACTTCT
TTCTCCTTCTTTTCATGCGGGATGGTTACGTGTTCACCTTTTTGGCCAAT
GCGACGTACGCTCTTGCGTTTGGCTATTATTTTTACGTGACTTTTCTTGG
CTATGACGTGCTCCCGTTCTTGCAGCATACGACGGTATTCTTGTATCCCG
TTATTGCTGTTGCCTTCATCTTTCTTGTCACCACTATAGTTAAGTTTAAT
TTGTGTGTTTTCGTCATGAATTCATACTTCGGATAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:3016553..3017488-

>Gvermi12017.t1 ID=Gvermi12017.t1|Name=Gvermi12017.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=765bp|location=Sequence derived from alignment at ScGOVlb_3404:3016553..3017488- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGAGTACGATCAGCCTGCCACTTTATGGTGCGAAAAGCACAAACAG
TTCGATAGGAGGGAGCTCTCTTCAAATGCCCGAATATGTGCGCCGTTTCT
TCCAGTACCCCCAAATGGACATTGATTACACTTTATGGCAAATGCTGTAT
CTCTGCATATCGCCATCTCGCGTGTATCGAACTACCAAGTACCACAAGCA
AACAAAAAACCAATGGGCACGAGACGATCCCGCGTTCGTGGCCATAATGG
TGTACTTCATGGCGGTTTCGTCTCTCGGATATGCAATCGCTTTTCACAAG
AACTTTTCTGGTTTCTTCAAAACGATCCTTTATGCCGTTGTTGTCGATTT
TGGTCTCGTCGGTGTGTTAGCAGCCACTATTGGTTGGTATGTGGCCAATC
AATACTTGCGGATAGAAAGCGCAGGAAGTCACACAACCGATCAGAAGGTG
GAATGGCTCTATGCCTTTGATGTTCACTGCAATTCGTTCTTTCCTTTTTT
CATTCTTCTATACGTATTGCAATACTTCTTTCTCCTTCTTTTCATGCGGG
ATGGTTACGTGTTCACCTTTTTGGCCAATGCGACGTACGCTCTTGCGTTT
GGCTATTATTTTTACGTGACTTTTCTTGGCTATGACGTGCTCCCGTTCTT
GCAGCATACGACGGTATTCTTGTATCCCGTTATTGCTGTTGCCTTCATCT
TTCTTGTCACCACTATAGTTAAGTTTAATTTGTGTGTTTTCGTCATGAAT
TCATACTTCGGATAG
back to top