Gvermi12013.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12013.t1
Unique NameGvermi12013.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length500
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3002212..3003711 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1174528.JH992898_gene3466
PFAMsMethyltransf_23
Max annot lvl1117|Cyanobacteria
Evalue5.92e-16
EggNOG OGsCOG0500@1|root,COG0500@2|Bacteria,1GG6W@1117|Cyanobacteria
Descriptionmethyltransferase
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12013Gvermi12013Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3002212..3003711 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12013.t1.start1Gvermi12013.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3002212..3002214 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12013.t1.CDS1Gvermi12013.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3002212..3003711 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12013.t1.exon1Gvermi12013.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3002212..3003711 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12013.t1.stop1Gvermi12013.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3003709..3003711 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12013.t1Gvermi12013.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3002212..3003711 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12013.t1 ID=Gvermi12013.t1|Name=Gvermi12013.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=500bp
MQQINPTMPLKEDDYVRYYDIRRQASSMTSNSASWLCSRARELLLRAAPI
SDCTFKVLSVGPGPGDIDIQLIRTLQSIISQSSVNGTWTKIQYIALEPNP
TYYERLRFSLNQLDPQCFSFEVQPMCFEQFDDLHHKFDVVLFAHVLYYFD
HLALALQRACYFCRETGSVFIFHLGRTSISDIIGRIIKKTPNDNEAEVIT
AREVEDALQLMAVPYSYEELEAELDVTECLQLSELGRNIMSFCIERDLSA
LNATQLSKIATAFCEKANKNEDGRFLLSDPVGIFVIDPPKTFLKSNQDTD
KVDDYRVLNHEIPWRQVLRSVTSNVEVELRVLDLACGRGRWINAFSMYAA
EGIEDMIIELDVLDVSHSAVEQLRKAVKPPFKLRSSFISKMQDVVLDKSS
YDVIWSMHGFYAVPVDELPSVLLNMQNAIRKNGICIIALATRKSFYLTMP
KKYAEALNATEYTRENETNITSAENVITALRNLNISFKVRSLVSIRPVR*
back to top

spliced messenger RNA

>Gvermi12013.t1 ID=Gvermi12013.t1|Name=Gvermi12013.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1500bp|location=Sequence derived from alignment at ScGOVlb_3404:3002212..3003711+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCAAATTAATCCGACTATGCCCCTGAAAGAAGACGACTACGTTAG
GTATTACGATATTCGACGCCAAGCTTCGTCCATGACATCCAATTCCGCCT
CATGGCTGTGTTCTCGAGCTCGTGAGTTGCTTCTTCGGGCTGCTCCTATT
TCAGATTGTACGTTCAAAGTACTCAGTGTTGGACCTGGACCTGGTGATAT
TGATATTCAGCTTATACGCACTCTACAAAGCATCATAAGCCAGTCTTCCG
TGAATGGCACTTGGACTAAAATTCAGTACATTGCATTGGAGCCCAACCCA
ACTTATTACGAACGCCTGCGTTTCAGTCTAAATCAGTTGGACCCTCAATG
TTTTAGTTTTGAAGTCCAGCCCATGTGTTTTGAACAATTTGATGACCTGC
ACCACAAGTTCGACGTCGTCCTTTTTGCACACGTGCTGTATTATTTCGAT
CATCTCGCGCTTGCTTTGCAGCGAGCTTGCTATTTCTGTCGAGAAACTGG
CTCGGTATTTATCTTTCATTTAGGTCGCACCAGTATTTCAGATATTATTG
GTCGGATTATTAAAAAGACGCCCAATGACAATGAAGCCGAAGTAATCACC
GCCCGTGAAGTTGAAGATGCACTTCAACTCATGGCAGTGCCTTATTCTTA
CGAAGAGCTAGAGGCAGAATTGGATGTGACTGAATGTTTACAGCTCTCTG
AATTAGGCCGCAATATCATGTCATTTTGCATTGAACGTGATTTGAGCGCT
CTGAATGCTACCCAACTTTCGAAGATCGCAACCGCTTTCTGTGAAAAGGC
AAACAAGAATGAAGATGGGCGATTCCTGCTAAGTGATCCTGTGGGCATAT
TCGTGATTGATCCCCCGAAAACGTTTCTGAAATCCAATCAAGACACCGAT
AAAGTTGACGATTACAGGGTGCTTAACCATGAAATCCCGTGGCGACAAGT
TCTAAGATCTGTTACATCCAATGTGGAAGTCGAGTTGCGTGTCTTGGATC
TTGCATGTGGCCGTGGACGTTGGATTAATGCGTTTTCAATGTATGCTGCA
GAAGGTATTGAAGACATGATCATCGAACTTGATGTATTGGACGTATCTCA
CTCAGCTGTGGAACAACTTAGAAAGGCAGTAAAACCACCTTTCAAACTCC
GTTCAAGCTTCATTTCCAAGATGCAAGATGTGGTTCTCGACAAATCTTCT
TATGATGTCATATGGTCAATGCATGGATTCTATGCTGTGCCTGTTGATGA
ACTTCCTAGCGTGTTGCTGAACATGCAAAACGCGATTAGGAAAAACGGAA
TTTGCATAATTGCACTGGCGACGCGCAAGTCCTTTTATTTGACGATGCCA
AAGAAATATGCCGAAGCACTGAACGCAACCGAATACACACGAGAAAATGA
GACAAACATAACAAGCGCTGAAAACGTGATCACGGCTCTTCGAAATCTCA
ATATCTCATTCAAAGTACGCTCtctagtgtctatccgaccggtgcgctga
back to top

protein sequence of Gvermi12013.t1

>Gvermi12013.t1 ID=Gvermi12013.t1|Name=Gvermi12013.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=500bp
MQQINPTMPLKEDDYVRYYDIRRQASSMTSNSASWLCSRARELLLRAAPI
SDCTFKVLSVGPGPGDIDIQLIRTLQSIISQSSVNGTWTKIQYIALEPNP
TYYERLRFSLNQLDPQCFSFEVQPMCFEQFDDLHHKFDVVLFAHVLYYFD
HLALALQRACYFCRETGSVFIFHLGRTSISDIIGRIIKKTPNDNEAEVIT
AREVEDALQLMAVPYSYEELEAELDVTECLQLSELGRNIMSFCIERDLSA
LNATQLSKIATAFCEKANKNEDGRFLLSDPVGIFVIDPPKTFLKSNQDTD
KVDDYRVLNHEIPWRQVLRSVTSNVEVELRVLDLACGRGRWINAFSMYAA
EGIEDMIIELDVLDVSHSAVEQLRKAVKPPFKLRSSFISKMQDVVLDKSS
YDVIWSMHGFYAVPVDELPSVLLNMQNAIRKNGICIIALATRKSFYLTMP
KKYAEALNATEYTRENETNITSAENVITALRNLNISFKVRSLVSIRPVR*
back to top

mRNA from alignment at ScGOVlb_3404:3002212..3003711+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12013.t1 ID=Gvermi12013.t1|Name=Gvermi12013.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1500bp|location=Sequence derived from alignment at ScGOVlb_3404:3002212..3003711+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCAAATTAATCCGACTATGCCCCTGAAAGAAGACGACTACGTTAG
GTATTACGATATTCGACGCCAAGCTTCGTCCATGACATCCAATTCCGCCT
CATGGCTGTGTTCTCGAGCTCGTGAGTTGCTTCTTCGGGCTGCTCCTATT
TCAGATTGTACGTTCAAAGTACTCAGTGTTGGACCTGGACCTGGTGATAT
TGATATTCAGCTTATACGCACTCTACAAAGCATCATAAGCCAGTCTTCCG
TGAATGGCACTTGGACTAAAATTCAGTACATTGCATTGGAGCCCAACCCA
ACTTATTACGAACGCCTGCGTTTCAGTCTAAATCAGTTGGACCCTCAATG
TTTTAGTTTTGAAGTCCAGCCCATGTGTTTTGAACAATTTGATGACCTGC
ACCACAAGTTCGACGTCGTCCTTTTTGCACACGTGCTGTATTATTTCGAT
CATCTCGCGCTTGCTTTGCAGCGAGCTTGCTATTTCTGTCGAGAAACTGG
CTCGGTATTTATCTTTCATTTAGGTCGCACCAGTATTTCAGATATTATTG
GTCGGATTATTAAAAAGACGCCCAATGACAATGAAGCCGAAGTAATCACC
GCCCGTGAAGTTGAAGATGCACTTCAACTCATGGCAGTGCCTTATTCTTA
CGAAGAGCTAGAGGCAGAATTGGATGTGACTGAATGTTTACAGCTCTCTG
AATTAGGCCGCAATATCATGTCATTTTGCATTGAACGTGATTTGAGCGCT
CTGAATGCTACCCAACTTTCGAAGATCGCAACCGCTTTCTGTGAAAAGGC
AAACAAGAATGAAGATGGGCGATTCCTGCTAAGTGATCCTGTGGGCATAT
TCGTGATTGATCCCCCGAAAACGTTTCTGAAATCCAATCAAGACACCGAT
AAAGTTGACGATTACAGGGTGCTTAACCATGAAATCCCGTGGCGACAAGT
TCTAAGATCTGTTACATCCAATGTGGAAGTCGAGTTGCGTGTCTTGGATC
TTGCATGTGGCCGTGGACGTTGGATTAATGCGTTTTCAATGTATGCTGCA
GAAGGTATTGAAGACATGATCATCGAACTTGATGTATTGGACGTATCTCA
CTCAGCTGTGGAACAACTTAGAAAGGCAGTAAAACCACCTTTCAAACTCC
GTTCAAGCTTCATTTCCAAGATGCAAGATGTGGTTCTCGACAAATCTTCT
TATGATGTCATATGGTCAATGCATGGATTCTATGCTGTGCCTGTTGATGA
ACTTCCTAGCGTGTTGCTGAACATGCAAAACGCGATTAGGAAAAACGGAA
TTTGCATAATTGCACTGGCGACGCGCAAGTCCTTTTATTTGACGATGCCA
AAGAAATATGCCGAAGCACTGAACGCAACCGAATACACACGAGAAAATGA
GACAAACATAACAAGCGCTGAAAACGTGATCACGGCTCTTCGAAATCTCA
ATATCTCATTCAAAGTACGCTCtctagtgtctatccgaccggtgcgctga
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:3002212..3003711+

>Gvermi12013.t1 ID=Gvermi12013.t1|Name=Gvermi12013.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1500bp|location=Sequence derived from alignment at ScGOVlb_3404:3002212..3003711+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCAAATTAATCCGACTATGCCCCTGAAAGAAGACGACTACGTTAG
GTATTACGATATTCGACGCCAAGCTTCGTCCATGACATCCAATTCCGCCT
CATGGCTGTGTTCTCGAGCTCGTGAGTTGCTTCTTCGGGCTGCTCCTATT
TCAGATTGTACGTTCAAAGTACTCAGTGTTGGACCTGGACCTGGTGATAT
TGATATTCAGCTTATACGCACTCTACAAAGCATCATAAGCCAGTCTTCCG
TGAATGGCACTTGGACTAAAATTCAGTACATTGCATTGGAGCCCAACCCA
ACTTATTACGAACGCCTGCGTTTCAGTCTAAATCAGTTGGACCCTCAATG
TTTTAGTTTTGAAGTCCAGCCCATGTGTTTTGAACAATTTGATGACCTGC
ACCACAAGTTCGACGTCGTCCTTTTTGCACACGTGCTGTATTATTTCGAT
CATCTCGCGCTTGCTTTGCAGCGAGCTTGCTATTTCTGTCGAGAAACTGG
CTCGGTATTTATCTTTCATTTAGGTCGCACCAGTATTTCAGATATTATTG
GTCGGATTATTAAAAAGACGCCCAATGACAATGAAGCCGAAGTAATCACC
GCCCGTGAAGTTGAAGATGCACTTCAACTCATGGCAGTGCCTTATTCTTA
CGAAGAGCTAGAGGCAGAATTGGATGTGACTGAATGTTTACAGCTCTCTG
AATTAGGCCGCAATATCATGTCATTTTGCATTGAACGTGATTTGAGCGCT
CTGAATGCTACCCAACTTTCGAAGATCGCAACCGCTTTCTGTGAAAAGGC
AAACAAGAATGAAGATGGGCGATTCCTGCTAAGTGATCCTGTGGGCATAT
TCGTGATTGATCCCCCGAAAACGTTTCTGAAATCCAATCAAGACACCGAT
AAAGTTGACGATTACAGGGTGCTTAACCATGAAATCCCGTGGCGACAAGT
TCTAAGATCTGTTACATCCAATGTGGAAGTCGAGTTGCGTGTCTTGGATC
TTGCATGTGGCCGTGGACGTTGGATTAATGCGTTTTCAATGTATGCTGCA
GAAGGTATTGAAGACATGATCATCGAACTTGATGTATTGGACGTATCTCA
CTCAGCTGTGGAACAACTTAGAAAGGCAGTAAAACCACCTTTCAAACTCC
GTTCAAGCTTCATTTCCAAGATGCAAGATGTGGTTCTCGACAAATCTTCT
TATGATGTCATATGGTCAATGCATGGATTCTATGCTGTGCCTGTTGATGA
ACTTCCTAGCGTGTTGCTGAACATGCAAAACGCGATTAGGAAAAACGGAA
TTTGCATAATTGCACTGGCGACGCGCAAGTCCTTTTATTTGACGATGCCA
AAGAAATATGCCGAAGCACTGAACGCAACCGAATACACACGAGAAAATGA
GACAAACATAACAAGCGCTGAAAACGTGATCACGGCTCTTCGAAATCTCA
ATATCTCATTCAAAGTACGCTCtctagtgtctatccgaccggtgcgctga
back to top