Gvermi12006.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12006.t1
Unique NameGvermi12006.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length474
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2915161..2916582 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12006Gvermi12006Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2915161..2916582 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12006.t1.start1Gvermi12006.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2915161..2915163 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12006.t1.CDS1Gvermi12006.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2915161..2916582 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12006.t1.exon1Gvermi12006.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2915161..2916582 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12006.t1.stop1Gvermi12006.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2916580..2916582 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12006.t1Gvermi12006.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2915161..2916582 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12006.t1 ID=Gvermi12006.t1|Name=Gvermi12006.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=474bp
MRPTRAGDDAVMAYWVTFAGETVGGWIRTDCIVPYHPAYAAQIESRSNVA
IYRDCRRAMRVAEQHYNKSPSRFGFQQQDMLRVLHLSSIPLNQFVDMKSQ
DTEADVESEPPRYANEQTSYVQPTSESTRAHSEIHPVQTPPPQRFGGRVL
RPRAVKVESQPLPRRVLPPRKSKSRTLHGKAFSRYDDQQKTADDAAPPTP
KKCEPREIKVTTANAATAPTARRRPISTKAAAPKAQNARASLPPSSRKTD
TALVLAPVACRQRGRARKRPLLGQKQPVSSRITKPEPTVSSQVVVKMEPE
DALTHIPAQLSSWRQFRRKRRGRHRKVAPSPEPAVSEVREKPTQVLDRMQ
RRIRRQEKQILLLSQQHRSNNTGASPSAGHSALPSISVLTKTTDPKTIRA
QTERFVQKLLNFQRLSVQLAVEAERFQEAQKNCEAAWKSVVEEGRATEQQ
AMELEAFIAKLPGLTQFLRSVRM*
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spliced messenger RNA

>Gvermi12006.t1 ID=Gvermi12006.t1|Name=Gvermi12006.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1422bp|location=Sequence derived from alignment at ScGOVlb_3404:2915161..2916582+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGCCCACGCGCGCTGGCGACGACGCCGTCATGGCCTACTGGGTCAC
CTTCGCCGGCGAGACCGTCGGCGGATGGATTCGCACCGACTGCATCGTTC
CCTACCACCCCGCCTACGCCGCTCAAATTGAGTCCCGCTCCAACGTCGCC
ATCTACCGAGACTGCCGCCGCGCCATGCGCGTTGCCGAACAACACTACAA
CAAATCGCCCTCCCGCTTCGGCTTCCAGCAGCAGGACATGCTGCGAGTCC
TGCACCTCTCCAGCATTCCTCTCAACCAGTTTGTCGACATGAAGAGCCAA
GACACCGAGGCCGATGTCGAATCCGAGCCCCCTCGCTACGCAAACGAGCA
AACGTCCTACGTGCAACCCACGTCCGAAAGCACCCGCGCGCACAGCGAAA
TCCACCCAGTGCAAACCCCTCCCCCCCAGCGCTTCGGAGGCCGCGTTCTG
AGGCCCAGAGCGGTAAAAGTCGAGAGCCAGCCGCTGCCACGCCGCGTCTT
GCCCCCGAGAAAGTCCAAGTCTCGCACGCTCCATGGTAAGGCCTTCTCCA
GATATGATGATCAACAGAAAACCGCCGACGATGCTGCGCCGCCCACACCC
AAAAAGTGCGAACCACGAGAGATCAAAGTGACCACTGCAAACGCTGCCAC
CGCGCCAACTGCAAGAAGACGCCCCATAAGCACGAAAGCCGCGGCGCCCA
AGGCGCAAAATGCACGCGCGTCGCTGCCGCCGTCCTCAAGGAAGACAGAC
ACTGCGCTTGTTCTAGCACCTGTCGCTTGCCGTCAGCGCGGACGCGCGCG
AAAACGCCCGTTGCTCGGGCAGAAGCAGCCGGTTTCTTCGAGGATTACCA
AGCCAGAACCAACCGTTAGTTCGCAGGTAGTCGTGAAGATGGAACCGGAG
GACGCTTTGACTCATATACCTGCTCAACTGTCTTCCTGGCGGCAGTTCCG
ACGAAAACGGCGCGGAAGGCATCGGAAGGTTGCACCATCGCCAGAGCCTG
CGGTTTCGGAGGTGCGAGAGAAACCGACCCAAGTCCTCGACAGAATGCAA
AGGAGAATCCGTAGGCAAGAGAAGCAAATACTGCTCTTGTCTCAGCAGCA
TAGGTCCAACAACACCGGGGCAAGTCCATCTGCGGGTCATAGTGCTTTGC
CATCAATAAGCGTCCTCACAAAAACCACAGATCCGAAAACAATCAGGGCG
CAAACGGAGCGATTTGTGCAGAAACTGCTCAACTTCCAGAGATTATCTGT
GCAACTTGCTGTTGAAGCAGAACGTTTCCAGGAGGCACAAAAAAATTGCG
AGGCCGCGTGGAAGTCAGTAGTCGAGGAAGGCCGAGCCACAGAACAGCAA
GCCATGGAACTGGAAGCATTCATAGCCAAGCTGCCGGGCTTGACGCAGTT
CCTCCGTTCTGTTAGAATGTAA
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protein sequence of Gvermi12006.t1

>Gvermi12006.t1 ID=Gvermi12006.t1|Name=Gvermi12006.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=474bp
MRPTRAGDDAVMAYWVTFAGETVGGWIRTDCIVPYHPAYAAQIESRSNVA
IYRDCRRAMRVAEQHYNKSPSRFGFQQQDMLRVLHLSSIPLNQFVDMKSQ
DTEADVESEPPRYANEQTSYVQPTSESTRAHSEIHPVQTPPPQRFGGRVL
RPRAVKVESQPLPRRVLPPRKSKSRTLHGKAFSRYDDQQKTADDAAPPTP
KKCEPREIKVTTANAATAPTARRRPISTKAAAPKAQNARASLPPSSRKTD
TALVLAPVACRQRGRARKRPLLGQKQPVSSRITKPEPTVSSQVVVKMEPE
DALTHIPAQLSSWRQFRRKRRGRHRKVAPSPEPAVSEVREKPTQVLDRMQ
RRIRRQEKQILLLSQQHRSNNTGASPSAGHSALPSISVLTKTTDPKTIRA
QTERFVQKLLNFQRLSVQLAVEAERFQEAQKNCEAAWKSVVEEGRATEQQ
AMELEAFIAKLPGLTQFLRSVRM*
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mRNA from alignment at ScGOVlb_3404:2915161..2916582+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12006.t1 ID=Gvermi12006.t1|Name=Gvermi12006.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1422bp|location=Sequence derived from alignment at ScGOVlb_3404:2915161..2916582+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGGCCCACGCGCGCTGGCGACGACGCCGTCATGGCCTACTGGGTCAC
CTTCGCCGGCGAGACCGTCGGCGGATGGATTCGCACCGACTGCATCGTTC
CCTACCACCCCGCCTACGCCGCTCAAATTGAGTCCCGCTCCAACGTCGCC
ATCTACCGAGACTGCCGCCGCGCCATGCGCGTTGCCGAACAACACTACAA
CAAATCGCCCTCCCGCTTCGGCTTCCAGCAGCAGGACATGCTGCGAGTCC
TGCACCTCTCCAGCATTCCTCTCAACCAGTTTGTCGACATGAAGAGCCAA
GACACCGAGGCCGATGTCGAATCCGAGCCCCCTCGCTACGCAAACGAGCA
AACGTCCTACGTGCAACCCACGTCCGAAAGCACCCGCGCGCACAGCGAAA
TCCACCCAGTGCAAACCCCTCCCCCCCAGCGCTTCGGAGGCCGCGTTCTG
AGGCCCAGAGCGGTAAAAGTCGAGAGCCAGCCGCTGCCACGCCGCGTCTT
GCCCCCGAGAAAGTCCAAGTCTCGCACGCTCCATGGTAAGGCCTTCTCCA
GATATGATGATCAACAGAAAACCGCCGACGATGCTGCGCCGCCCACACCC
AAAAAGTGCGAACCACGAGAGATCAAAGTGACCACTGCAAACGCTGCCAC
CGCGCCAACTGCAAGAAGACGCCCCATAAGCACGAAAGCCGCGGCGCCCA
AGGCGCAAAATGCACGCGCGTCGCTGCCGCCGTCCTCAAGGAAGACAGAC
ACTGCGCTTGTTCTAGCACCTGTCGCTTGCCGTCAGCGCGGACGCGCGCG
AAAACGCCCGTTGCTCGGGCAGAAGCAGCCGGTTTCTTCGAGGATTACCA
AGCCAGAACCAACCGTTAGTTCGCAGGTAGTCGTGAAGATGGAACCGGAG
GACGCTTTGACTCATATACCTGCTCAACTGTCTTCCTGGCGGCAGTTCCG
ACGAAAACGGCGCGGAAGGCATCGGAAGGTTGCACCATCGCCAGAGCCTG
CGGTTTCGGAGGTGCGAGAGAAACCGACCCAAGTCCTCGACAGAATGCAA
AGGAGAATCCGTAGGCAAGAGAAGCAAATACTGCTCTTGTCTCAGCAGCA
TAGGTCCAACAACACCGGGGCAAGTCCATCTGCGGGTCATAGTGCTTTGC
CATCAATAAGCGTCCTCACAAAAACCACAGATCCGAAAACAATCAGGGCG
CAAACGGAGCGATTTGTGCAGAAACTGCTCAACTTCCAGAGATTATCTGT
GCAACTTGCTGTTGAAGCAGAACGTTTCCAGGAGGCACAAAAAAATTGCG
AGGCCGCGTGGAAGTCAGTAGTCGAGGAAGGCCGAGCCACAGAACAGCAA
GCCATGGAACTGGAAGCATTCATAGCCAAGCTGCCGGGCTTGACGCAGTT
CCTCCGTTCTGTTAGAATGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2915161..2916582+

>Gvermi12006.t1 ID=Gvermi12006.t1|Name=Gvermi12006.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1422bp|location=Sequence derived from alignment at ScGOVlb_3404:2915161..2916582+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGGCCCACGCGCGCTGGCGACGACGCCGTCATGGCCTACTGGGTCAC
CTTCGCCGGCGAGACCGTCGGCGGATGGATTCGCACCGACTGCATCGTTC
CCTACCACCCCGCCTACGCCGCTCAAATTGAGTCCCGCTCCAACGTCGCC
ATCTACCGAGACTGCCGCCGCGCCATGCGCGTTGCCGAACAACACTACAA
CAAATCGCCCTCCCGCTTCGGCTTCCAGCAGCAGGACATGCTGCGAGTCC
TGCACCTCTCCAGCATTCCTCTCAACCAGTTTGTCGACATGAAGAGCCAA
GACACCGAGGCCGATGTCGAATCCGAGCCCCCTCGCTACGCAAACGAGCA
AACGTCCTACGTGCAACCCACGTCCGAAAGCACCCGCGCGCACAGCGAAA
TCCACCCAGTGCAAACCCCTCCCCCCCAGCGCTTCGGAGGCCGCGTTCTG
AGGCCCAGAGCGGTAAAAGTCGAGAGCCAGCCGCTGCCACGCCGCGTCTT
GCCCCCGAGAAAGTCCAAGTCTCGCACGCTCCATGGTAAGGCCTTCTCCA
GATATGATGATCAACAGAAAACCGCCGACGATGCTGCGCCGCCCACACCC
AAAAAGTGCGAACCACGAGAGATCAAAGTGACCACTGCAAACGCTGCCAC
CGCGCCAACTGCAAGAAGACGCCCCATAAGCACGAAAGCCGCGGCGCCCA
AGGCGCAAAATGCACGCGCGTCGCTGCCGCCGTCCTCAAGGAAGACAGAC
ACTGCGCTTGTTCTAGCACCTGTCGCTTGCCGTCAGCGCGGACGCGCGCG
AAAACGCCCGTTGCTCGGGCAGAAGCAGCCGGTTTCTTCGAGGATTACCA
AGCCAGAACCAACCGTTAGTTCGCAGGTAGTCGTGAAGATGGAACCGGAG
GACGCTTTGACTCATATACCTGCTCAACTGTCTTCCTGGCGGCAGTTCCG
ACGAAAACGGCGCGGAAGGCATCGGAAGGTTGCACCATCGCCAGAGCCTG
CGGTTTCGGAGGTGCGAGAGAAACCGACCCAAGTCCTCGACAGAATGCAA
AGGAGAATCCGTAGGCAAGAGAAGCAAATACTGCTCTTGTCTCAGCAGCA
TAGGTCCAACAACACCGGGGCAAGTCCATCTGCGGGTCATAGTGCTTTGC
CATCAATAAGCGTCCTCACAAAAACCACAGATCCGAAAACAATCAGGGCG
CAAACGGAGCGATTTGTGCAGAAACTGCTCAACTTCCAGAGATTATCTGT
GCAACTTGCTGTTGAAGCAGAACGTTTCCAGGAGGCACAAAAAAATTGCG
AGGCCGCGTGGAAGTCAGTAGTCGAGGAAGGCCGAGCCACAGAACAGCAA
GCCATGGAACTGGAAGCATTCATAGCCAAGCTGCCGGGCTTGACGCAGTT
CCTCCGTTCTGTTAGAATGTAA
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