Gvermi12002.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12002.t1
Unique NameGvermi12002.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length548
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2863913..2867042 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1089550.ATTH01000001_gene1926
Preferred namedinF
PFAMsMatE
Max annot lvl976|Bacteroidetes
KEGG koko:K03327
KEGG TC2.A.66.1
Evalue1.02e-83
EggNOG OGsCOG0534@1|root,COG0534@2|Bacteria,4NG7Q@976|Bacteroidetes,1FJYR@1100069|Bacteroidetes Order II. Incertae sedis
DescriptionMatE
COG categoryV
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12002Gvermi12002Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2863913..2867042 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12002.t1Gvermi12002.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2863913..2867042 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12002.t1.stop1Gvermi12002.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2863913..2863915 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12002.t1.CDS1Gvermi12002.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2863913..2865533 -
Gvermi12002.t1.CDS2Gvermi12002.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2866822..2866830 -
Gvermi12002.t1.CDS3Gvermi12002.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2867029..2867042 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12002.t1.exon1Gvermi12002.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2863913..2865533 -
Gvermi12002.t1.exon2Gvermi12002.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2866822..2866830 -
Gvermi12002.t1.exon3Gvermi12002.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2867029..2867042 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12002.t1.intron1Gvermi12002.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 2865534..2866821 -
Gvermi12002.t1.intron2Gvermi12002.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 2866831..2867028 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12002.t1.start1Gvermi12002.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2867040..2867042 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12002.t1 ID=Gvermi12002.t1|Name=Gvermi12002.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=548bp
LPSSSLLAPALRRGLPFANMAVSQVVTNFVPPSSLRVPAPHALRRSSLRQ
HHAFLVPSLSRFKVQPLRKRPLFLAASSVSQEQPSPAASEPFPDNAVKQQ
AAPLASAATPPSIADIDRSIASISLPALATLSLDPLVALADMACVGYLGA
SAIGGVGIGNNVFNLSFTCFNFLGMATTPAIARAFASENHDEASRLIAQA
LWVALVSGLSATLILSLYTQPILSFFGANATILPQARAYLRARIFAAPFF
LAAMVGNGAFRGYQDTKTPLFVGLFANVLNLILYPTLIFGVGMGTRGAGM
AMATGQICAGMALLMLLVKTGKLRLKDMMSPPRANEIFPLLRTGAVLSVR
TLSIFSTISYATATAARLGTVQVAAFEIGRQIFALFARLLDAISVAAQSL
VALALGKNDYTLARRTANRILKIGVAMGCAFAALLILTIRSAPRIFTSNP
AVREAVSLTFPYMAFIQPINGLVFVFDGIYTAGRRFTSLAAAILMAACCA
SGFLFFVRTTSMSLQYVWVGLNILMVLRATFLGLLYFSKWSPAPKPR*
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spliced messenger RNA

>Gvermi12002.t1 ID=Gvermi12002.t1|Name=Gvermi12002.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1644bp|location=Sequence derived from alignment at ScGOVlb_3404:2863913..2867042- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGCCGTCTTCTAGTCTGCTTGCTCCTGCCCTTCGCCGTGGGCTGCCGTT
TGCCAACATGGCCGTCTCCCAGGTTGTGACAAACTTCGTGCCACCCTCGA
GCCTTCGCGTCCCCGCACCGCATGCCCTGCGGAGATCATCGCTGCGACAA
CACCACGCCTTTCTCGTGCCGTCTCTGAGTCGATTTAAGGTACAGCCTTT
GCGGAAACGGCCGCTCTTCCTCGCTGCCTCATCCGTTAGTCAAGAGCAGC
CGTCGCCGGCAGCCAGCGAGCCGTTTCCGGACAACGCGGTCAAACAGCAG
GCAGCGCCGCTGGCAAGTGCAGCCACGCCCCCATCCATTGCCGACATTGA
TCGTTCCATCGCCTCAATCTCGCTGCCGGCCCTCGCGACGCTCTCGCTGG
ATCCGCTCGTCGCGCTCGCGGACATGGCGTGCGTCGGGTACCTGGGCGCC
TCCGCCATCGGGGGGGTGGGCATTGGCAACAACGTCTTCAATCTGTCGTT
TACGTGCTTCAACTTCCTGGGCATGGCCACCACGCCGGCCATCGCCAGGG
CGTTTGCCAGCGAGAACCACGACGAGGCCTCGCGGCTCATTGCGCAGGCG
CTGTGGGTTGCGCTGGTTTCCGGCTTGTCCGCCACGCTCATTCTCTCGCT
GTACACGCAGCCTATTCTTTCGTTCTTCGGGGCGAATGCGACCATTCTGC
CGCAGGCGCGCGCGTACCTGCGCGCGAGGATATTTGCCGCCCCTTTCTTC
CTCGCCGCCATGGTCGGCAACGGCGCGTTTCGCGGCTACCAGGACACGAA
GACCCCCCTGTTCGTCGGCCTTTTCGCAAACGTTCTCAACCTCATACTGT
ACCCCACGCTCATTTTCGGCGTCGGGATGGGCACGCGCGGCGCTGGCATG
GCGATGGCCACGGGGCAAATATGCGCTGGCATGGCGCTTTTGATGCTGCT
CGTCAAGACGGGCAAGCTTCGCCTTAAAGATATGATGTCGCCCCCGAGAG
CAAACGAGATTTTCCCGCTGTTGAGAACCGGCGCCGTGCTGTCCGTGCGC
ACACTTTCCATATTTTCCACCATCTCGTATGCCACCGCGACTGCGGCGAG
GCTCGGAACTGTTCAAGTGGCCGCGTTTGAGATCGGACGCCAGATCTTTG
CGCTGTTTGCGCGCCTTCTCGACGCCATCTCGGTTGCAGCGCAGTCGCTG
GTGGCGCTCGCGCTCGGCAAGAATGACTACACTCTGGCCAGAAGGACGGC
GAACCGAATTCTCAAGATTGGAGTGGCCATGGGGTGCGCGTTTGCCGCGC
TGCTCATACTCACGATCCGGTCAGCTCCTCGCATATTCACATCCAACCCT
GCGGTGCGTGAAGCTGTTTCTCTCACGTTTCCATACATGGCGTTCATTCA
GCCTATCAACGGGCTTGTGTTTGTGTTTGACGGAATCTACACTGCCGGCC
GCCGCTTCACGTCGCTTGCAGCAGCGATCTTAATGGCTGCGTGTTGTGCA
TCTGGCTTCCTTTTCTTTGTGCGGACAACGTCAATGTCTCTGCAGTACGT
GTGGGTGGGCCTGAATATTTTGATGGTTCTGCGCGCAACTTTCCTCGGCT
TGCTTTACTTTTCAAAGTGGTCGCCTGCACCAAAACCGAGATGA
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protein sequence of Gvermi12002.t1

>Gvermi12002.t1 ID=Gvermi12002.t1|Name=Gvermi12002.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=548bp
LPSSSLLAPALRRGLPFANMAVSQVVTNFVPPSSLRVPAPHALRRSSLRQ
HHAFLVPSLSRFKVQPLRKRPLFLAASSVSQEQPSPAASEPFPDNAVKQQ
AAPLASAATPPSIADIDRSIASISLPALATLSLDPLVALADMACVGYLGA
SAIGGVGIGNNVFNLSFTCFNFLGMATTPAIARAFASENHDEASRLIAQA
LWVALVSGLSATLILSLYTQPILSFFGANATILPQARAYLRARIFAAPFF
LAAMVGNGAFRGYQDTKTPLFVGLFANVLNLILYPTLIFGVGMGTRGAGM
AMATGQICAGMALLMLLVKTGKLRLKDMMSPPRANEIFPLLRTGAVLSVR
TLSIFSTISYATATAARLGTVQVAAFEIGRQIFALFARLLDAISVAAQSL
VALALGKNDYTLARRTANRILKIGVAMGCAFAALLILTIRSAPRIFTSNP
AVREAVSLTFPYMAFIQPINGLVFVFDGIYTAGRRFTSLAAAILMAACCA
SGFLFFVRTTSMSLQYVWVGLNILMVLRATFLGLLYFSKWSPAPKPR*
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mRNA from alignment at ScGOVlb_3404:2863913..2867042-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12002.t1 ID=Gvermi12002.t1|Name=Gvermi12002.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=3130bp|location=Sequence derived from alignment at ScGOVlb_3404:2863913..2867042- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGCCGTCTTCTAGGTACGTCGCCCGCCCGCGCCCGCGCCCTCTGTGACG
ATTACCGTTTGAATCTCGTTAATAATGACGGCGCGCCTGCCGCGCGCCGC
ATGAGCTCAAACCTCAACATCCATCTTGTCTGAGAGACGCTGTCGCCATC
GCCGCACTGTTCCGGCCCTCGTCGCCCGTCCGCCCTACTCACATTTTTCT
CTTTGTTTGCAGTCTGCTTGCGTCGTTGCGTTGCCGCGCCCGTTCGCACC
CGCCCGCGCCGCCGCCTCGGAGCCGCGCCGCCGCCGGTCGCCGCGCCCCG
CATGCTGCGCGCCTTTCCTGCGCCTCGCTGTCTGCGCCGTGCGTTCGTCG
AGCGCGGCTGCGCCCTGGCGCGCCCGCCCCGCTCCTTTCGCCGCCCTTTC
CTCCGCAGCTGTCGCTTGCGGTTGTCCGCGACCCCCTTTTCCCTTCATCG
CTGCGTTTGCGCGCGCGGCTTGTTGACTGCCGCGGGGGAAGCACGCGGAG
ACGGTGCGCGCGAGCTCGCTTCGCGCGTGCGGCGCGACGCGCCCGTGCAT
GGGCGGGCGTGCCGCCTCTCCGCCGCGCTGACGGCCCGTTTGGAGCGGCG
TGCGCCGGTGGTCGCATCTCTGACGCGCCACATGCGCCTATTCATTGAAT
CGCGCGATGCGTGCGCTCATCTTTGCGCACAAGCAGTCTGTGCTGCGTGT
GCGTGCTGTGTCTGTCTTTGTGTATTGCGCGTAGTGGGCGCGGCGGCCCC
CTGCCGCCTCGATGGGGCACGATTGTTAATGTTGTAAATAAGCGTCCGTC
CGATGAACGCGGTGGCTCGATGTGGGTGCGCGCCCTTGCACGTGTTGGGC
TTCGTGGCCGGGCGTGCGACGCGCCTGCGGTGTGCTCGGCGTGGTGCGCG
TCTGCGTGCGCATTGTGCACCGCTTGCGGCCGTTTGCGCGTCGGTGACGC
CCCGCGGTGCTGGCGCGACGGGGGCTTCCAACCTCCCGCGGACGTTCGTT
TGCGGCGCGTGCTCTAGTGTGCGTGCGGTGTGCGCTCGGGCTGGTGCCTG
CGCTTGCGCGTCTACCGCTCACTGGCTGGGTTGTTGCGATCGTGGGCGCA
AGGCTGCCGCGACCGCGCTGGCGCTTGCGCTGGGTGCACTCGGACGGTGG
GCTTTGCAAAACGCTGTTCGGGTGATTGCGCCTTTCCGTCCGGCCGCGGC
CGCTGCCGCTTGATGAGGAACAAACTCACTCAGCAGTTATCGCCGGCTAC
AGGCTGAGGAGACGTTTTTGTTATACTACGGGGCTCCGGGTATGTGACTG
GTCGCGGCTGCAATGCTGTATGTGGCTCTTTTTTTTGGAAGCCGATCGCG
ATTTGTGTGGTCTAATCTCGAAAACTAACCTTCTCTCGTGCTGTAGGGGT
TCCGTCAAAGCTGCCCGCTGTACTGCAGTAGCGTCGCCATCGTTGAGATG
CCCGTCCGCCGTCCCTCCTAGACAGCTTCTCTCAATCTTGCCCGCCCGTA
GTGCCGCAGTCCTGCCCTTCGCCGTGGGCTGCCGTTTGCCAACATGGCCG
TCTCCCAGGTTGTGACAAACTTCGTGCCACCCTCGAGCCTTCGCGTCCCC
GCACCGCATGCCCTGCGGAGATCATCGCTGCGACAACACCACGCCTTTCT
CGTGCCGTCTCTGAGTCGATTTAAGGTACAGCCTTTGCGGAAACGGCCGC
TCTTCCTCGCTGCCTCATCCGTTAGTCAAGAGCAGCCGTCGCCGGCAGCC
AGCGAGCCGTTTCCGGACAACGCGGTCAAACAGCAGGCAGCGCCGCTGGC
AAGTGCAGCCACGCCCCCATCCATTGCCGACATTGATCGTTCCATCGCCT
CAATCTCGCTGCCGGCCCTCGCGACGCTCTCGCTGGATCCGCTCGTCGCG
CTCGCGGACATGGCGTGCGTCGGGTACCTGGGCGCCTCCGCCATCGGGGG
GGTGGGCATTGGCAACAACGTCTTCAATCTGTCGTTTACGTGCTTCAACT
TCCTGGGCATGGCCACCACGCCGGCCATCGCCAGGGCGTTTGCCAGCGAG
AACCACGACGAGGCCTCGCGGCTCATTGCGCAGGCGCTGTGGGTTGCGCT
GGTTTCCGGCTTGTCCGCCACGCTCATTCTCTCGCTGTACACGCAGCCTA
TTCTTTCGTTCTTCGGGGCGAATGCGACCATTCTGCCGCAGGCGCGCGCG
TACCTGCGCGCGAGGATATTTGCCGCCCCTTTCTTCCTCGCCGCCATGGT
CGGCAACGGCGCGTTTCGCGGCTACCAGGACACGAAGACCCCCCTGTTCG
TCGGCCTTTTCGCAAACGTTCTCAACCTCATACTGTACCCCACGCTCATT
TTCGGCGTCGGGATGGGCACGCGCGGCGCTGGCATGGCGATGGCCACGGG
GCAAATATGCGCTGGCATGGCGCTTTTGATGCTGCTCGTCAAGACGGGCA
AGCTTCGCCTTAAAGATATGATGTCGCCCCCGAGAGCAAACGAGATTTTC
CCGCTGTTGAGAACCGGCGCCGTGCTGTCCGTGCGCACACTTTCCATATT
TTCCACCATCTCGTATGCCACCGCGACTGCGGCGAGGCTCGGAACTGTTC
AAGTGGCCGCGTTTGAGATCGGACGCCAGATCTTTGCGCTGTTTGCGCGC
CTTCTCGACGCCATCTCGGTTGCAGCGCAGTCGCTGGTGGCGCTCGCGCT
CGGCAAGAATGACTACACTCTGGCCAGAAGGACGGCGAACCGAATTCTCA
AGATTGGAGTGGCCATGGGGTGCGCGTTTGCCGCGCTGCTCATACTCACG
ATCCGGTCAGCTCCTCGCATATTCACATCCAACCCTGCGGTGCGTGAAGC
TGTTTCTCTCACGTTTCCATACATGGCGTTCATTCAGCCTATCAACGGGC
TTGTGTTTGTGTTTGACGGAATCTACACTGCCGGCCGCCGCTTCACGTCG
CTTGCAGCAGCGATCTTAATGGCTGCGTGTTGTGCATCTGGCTTCCTTTT
CTTTGTGCGGACAACGTCAATGTCTCTGCAGTACGTGTGGGTGGGCCTGA
ATATTTTGATGGTTCTGCGCGCAACTTTCCTCGGCTTGCTTTACTTTTCA
AAGTGGTCGCCTGCACCAAAACCGAGATGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2863913..2867042-

>Gvermi12002.t1 ID=Gvermi12002.t1|Name=Gvermi12002.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1644bp|location=Sequence derived from alignment at ScGOVlb_3404:2863913..2867042- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGCCGTCTTCTAGTCTGCTTGCTCCTGCCCTTCGCCGTGGGCTGCCGTT
TGCCAACATGGCCGTCTCCCAGGTTGTGACAAACTTCGTGCCACCCTCGA
GCCTTCGCGTCCCCGCACCGCATGCCCTGCGGAGATCATCGCTGCGACAA
CACCACGCCTTTCTCGTGCCGTCTCTGAGTCGATTTAAGGTACAGCCTTT
GCGGAAACGGCCGCTCTTCCTCGCTGCCTCATCCGTTAGTCAAGAGCAGC
CGTCGCCGGCAGCCAGCGAGCCGTTTCCGGACAACGCGGTCAAACAGCAG
GCAGCGCCGCTGGCAAGTGCAGCCACGCCCCCATCCATTGCCGACATTGA
TCGTTCCATCGCCTCAATCTCGCTGCCGGCCCTCGCGACGCTCTCGCTGG
ATCCGCTCGTCGCGCTCGCGGACATGGCGTGCGTCGGGTACCTGGGCGCC
TCCGCCATCGGGGGGGTGGGCATTGGCAACAACGTCTTCAATCTGTCGTT
TACGTGCTTCAACTTCCTGGGCATGGCCACCACGCCGGCCATCGCCAGGG
CGTTTGCCAGCGAGAACCACGACGAGGCCTCGCGGCTCATTGCGCAGGCG
CTGTGGGTTGCGCTGGTTTCCGGCTTGTCCGCCACGCTCATTCTCTCGCT
GTACACGCAGCCTATTCTTTCGTTCTTCGGGGCGAATGCGACCATTCTGC
CGCAGGCGCGCGCGTACCTGCGCGCGAGGATATTTGCCGCCCCTTTCTTC
CTCGCCGCCATGGTCGGCAACGGCGCGTTTCGCGGCTACCAGGACACGAA
GACCCCCCTGTTCGTCGGCCTTTTCGCAAACGTTCTCAACCTCATACTGT
ACCCCACGCTCATTTTCGGCGTCGGGATGGGCACGCGCGGCGCTGGCATG
GCGATGGCCACGGGGCAAATATGCGCTGGCATGGCGCTTTTGATGCTGCT
CGTCAAGACGGGCAAGCTTCGCCTTAAAGATATGATGTCGCCCCCGAGAG
CAAACGAGATTTTCCCGCTGTTGAGAACCGGCGCCGTGCTGTCCGTGCGC
ACACTTTCCATATTTTCCACCATCTCGTATGCCACCGCGACTGCGGCGAG
GCTCGGAACTGTTCAAGTGGCCGCGTTTGAGATCGGACGCCAGATCTTTG
CGCTGTTTGCGCGCCTTCTCGACGCCATCTCGGTTGCAGCGCAGTCGCTG
GTGGCGCTCGCGCTCGGCAAGAATGACTACACTCTGGCCAGAAGGACGGC
GAACCGAATTCTCAAGATTGGAGTGGCCATGGGGTGCGCGTTTGCCGCGC
TGCTCATACTCACGATCCGGTCAGCTCCTCGCATATTCACATCCAACCCT
GCGGTGCGTGAAGCTGTTTCTCTCACGTTTCCATACATGGCGTTCATTCA
GCCTATCAACGGGCTTGTGTTTGTGTTTGACGGAATCTACACTGCCGGCC
GCCGCTTCACGTCGCTTGCAGCAGCGATCTTAATGGCTGCGTGTTGTGCA
TCTGGCTTCCTTTTCTTTGTGCGGACAACGTCAATGTCTCTGCAGTACGT
GTGGGTGGGCCTGAATATTTTGATGGTTCTGCGCGCAACTTTCCTCGGCT
TGCTTTACTTTTCAAAGTGGTCGCCTGCACCAAAACCGAGATGA
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