Gvermi11998.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11998.t1
Unique NameGvermi11998.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length229
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2847853..2848539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog251229.Chro_5015
Max annot lvl1117|Cyanobacteria
Evalue1.55e-36
EggNOG OGs28PPV@1|root,2ZCC6@2|Bacteria,1G5I9@1117|Cyanobacteria
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11998Gvermi11998Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2847853..2848539 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11998.t1.stop1Gvermi11998.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2847853..2847855 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11998.t1.CDS1Gvermi11998.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2847853..2848539 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11998.t1.exon1Gvermi11998.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2847853..2848539 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11998.t1.start1Gvermi11998.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2848537..2848539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11998.t1Gvermi11998.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2847853..2848539 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11998.t1 ID=Gvermi11998.t1|Name=Gvermi11998.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=229bp
MPAPLFFVSPVAVPFRPVTVCAPHTSTASSAIHPGRRRGAVRTDVRASFM
QDFLAGPSNPPRPRPLYQVILFTISTNFIWYGWYKYCIEQELRRLTGEGP
GGIGALLPFILGVTSPLYLPSGLPSQLAVFSGILWIVSVQYYLYQRINSL
IVEKGAPPPLTPWWIVVPGFNLVVGLRSVHFLSLAFGAEADSDPLIDYLP
FLGKDTLGIWELLTTPSLWLSFGIRNGK*
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spliced messenger RNA

>Gvermi11998.t1 ID=Gvermi11998.t1|Name=Gvermi11998.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=687bp|location=Sequence derived from alignment at ScGOVlb_3404:2847853..2848539- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGCGCCTCTCTTCTTCGTGTCGCCGGTTGCTGTGCCTTTCCGACC
CGTCACTGTCTGTGCGCCACACACATCCACCGCATCATCCGCCATCCACC
CTGGCCGTCGACGTGGCGCAGTGAGAACCGATGTGCGCGCCTCGTTCATG
CAAGATTTTTTGGCGGGACCCTCGAATCCACCGAGACCACGACCCCTTTA
CCAGGTGATCTTGTTCACCATAAGCACAAACTTCATCTGGTACGGCTGGT
ACAAGTATTGCATAGAGCAGGAGCTTCGTCGACTGACAGGCGAAGGACCG
GGCGGCATAGGCGCTCTCCTGCCCTTCATCCTGGGAGTCACATCACCGCT
CTACCTTCCGAGCGGGCTCCCTTCGCAACTGGCAGTCTTTTCAGGCATAC
TTTGGATCGTGTCCGTGCAGTATTACCTCTATCAACGCATCAATTCCCTC
ATTGTTGAAAAGGGTGCCCCCCCTCCTCTAACTCCGTGGTGGATCGTTGT
TCCCGGTTTCAATCTTGTCGTGGGCTTGCGGAGCGTACATTTCCTCAGCC
TCGCTTTTGGAGCCGAAGCAGATTCAGATCCGCTGATTGACTACCTGCCC
TTCTTGGGCAAGGACACTCTGGGAATATGGGAATTACTCACTACCCCTTC
TTTGTGGTTGAGCTTTGGGATTCGAAATGGCAAGTAA
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protein sequence of Gvermi11998.t1

>Gvermi11998.t1 ID=Gvermi11998.t1|Name=Gvermi11998.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=229bp
MPAPLFFVSPVAVPFRPVTVCAPHTSTASSAIHPGRRRGAVRTDVRASFM
QDFLAGPSNPPRPRPLYQVILFTISTNFIWYGWYKYCIEQELRRLTGEGP
GGIGALLPFILGVTSPLYLPSGLPSQLAVFSGILWIVSVQYYLYQRINSL
IVEKGAPPPLTPWWIVVPGFNLVVGLRSVHFLSLAFGAEADSDPLIDYLP
FLGKDTLGIWELLTTPSLWLSFGIRNGK*
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mRNA from alignment at ScGOVlb_3404:2847853..2848539-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11998.t1 ID=Gvermi11998.t1|Name=Gvermi11998.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=687bp|location=Sequence derived from alignment at ScGOVlb_3404:2847853..2848539- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTGCGCCTCTCTTCTTCGTGTCGCCGGTTGCTGTGCCTTTCCGACC
CGTCACTGTCTGTGCGCCACACACATCCACCGCATCATCCGCCATCCACC
CTGGCCGTCGACGTGGCGCAGTGAGAACCGATGTGCGCGCCTCGTTCATG
CAAGATTTTTTGGCGGGACCCTCGAATCCACCGAGACCACGACCCCTTTA
CCAGGTGATCTTGTTCACCATAAGCACAAACTTCATCTGGTACGGCTGGT
ACAAGTATTGCATAGAGCAGGAGCTTCGTCGACTGACAGGCGAAGGACCG
GGCGGCATAGGCGCTCTCCTGCCCTTCATCCTGGGAGTCACATCACCGCT
CTACCTTCCGAGCGGGCTCCCTTCGCAACTGGCAGTCTTTTCAGGCATAC
TTTGGATCGTGTCCGTGCAGTATTACCTCTATCAACGCATCAATTCCCTC
ATTGTTGAAAAGGGTGCCCCCCCTCCTCTAACTCCGTGGTGGATCGTTGT
TCCCGGTTTCAATCTTGTCGTGGGCTTGCGGAGCGTACATTTCCTCAGCC
TCGCTTTTGGAGCCGAAGCAGATTCAGATCCGCTGATTGACTACCTGCCC
TTCTTGGGCAAGGACACTCTGGGAATATGGGAATTACTCACTACCCCTTC
TTTGTGGTTGAGCTTTGGGATTCGAAATGGCAAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2847853..2848539-

>Gvermi11998.t1 ID=Gvermi11998.t1|Name=Gvermi11998.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=687bp|location=Sequence derived from alignment at ScGOVlb_3404:2847853..2848539- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTGCGCCTCTCTTCTTCGTGTCGCCGGTTGCTGTGCCTTTCCGACC
CGTCACTGTCTGTGCGCCACACACATCCACCGCATCATCCGCCATCCACC
CTGGCCGTCGACGTGGCGCAGTGAGAACCGATGTGCGCGCCTCGTTCATG
CAAGATTTTTTGGCGGGACCCTCGAATCCACCGAGACCACGACCCCTTTA
CCAGGTGATCTTGTTCACCATAAGCACAAACTTCATCTGGTACGGCTGGT
ACAAGTATTGCATAGAGCAGGAGCTTCGTCGACTGACAGGCGAAGGACCG
GGCGGCATAGGCGCTCTCCTGCCCTTCATCCTGGGAGTCACATCACCGCT
CTACCTTCCGAGCGGGCTCCCTTCGCAACTGGCAGTCTTTTCAGGCATAC
TTTGGATCGTGTCCGTGCAGTATTACCTCTATCAACGCATCAATTCCCTC
ATTGTTGAAAAGGGTGCCCCCCCTCCTCTAACTCCGTGGTGGATCGTTGT
TCCCGGTTTCAATCTTGTCGTGGGCTTGCGGAGCGTACATTTCCTCAGCC
TCGCTTTTGGAGCCGAAGCAGATTCAGATCCGCTGATTGACTACCTGCCC
TTCTTGGGCAAGGACACTCTGGGAATATGGGAATTACTCACTACCCCTTC
TTTGTGGTTGAGCTTTGGGATTCGAAATGGCAAGTAA
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