Gvermi11997.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11997.t1
Unique NameGvermi11997.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length259
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2844159..2846771 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11997Gvermi11997Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2844159..2846771 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11997.t1Gvermi11997.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2844159..2846771 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11997.t1.stop1Gvermi11997.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2844159..2844161 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11997.t1.CDS1Gvermi11997.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2844159..2844756 -
Gvermi11997.t1.CDS2Gvermi11997.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2846593..2846771 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11997.t1.exon1Gvermi11997.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2844159..2844756 -
Gvermi11997.t1.exon2Gvermi11997.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2846593..2846771 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11997.t1.intron1Gvermi11997.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 2844757..2846592 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11997.t1.start1Gvermi11997.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2846769..2846771 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11997.t1 ID=Gvermi11997.t1|Name=Gvermi11997.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=259bp
MLGIVVGTWTSMAIGGVTKMIVKAAFTVAISLFGTIVPSVGTMHTVRGVG
ASLQAVTPKPNGSPRLKSVPSISKPAKAAPISISPSPNTPSWLKGTYKPQ
PPSTAPLSTVEKWCEHRINSIKATVEDSGTEDSGDDIPELRQVMLDLDSK
SVPTEIQVLQGLRKDYWRAEERQRKAMAELRKAERDVMRIEPPAMHIESK
VTRLRRYAKFIESGWMDEDVLDMTKSDNVIESKGEDIPIKNEEEVVPPNN
VKVEPEIK*
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spliced messenger RNA

>Gvermi11997.t1 ID=Gvermi11997.t1|Name=Gvermi11997.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=777bp|location=Sequence derived from alignment at ScGOVlb_3404:2844159..2846771- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGGAATCGTTGTTGGGACTTGGACTAGCATGGCAATCGGAGGTGT
TACGAAGATGATTGTTAAAGCCGCTTTTACTGTTGCCATATCGTTGTTTG
GTACCATTGTGCCCAGTGTTGGTACAATGCACACCGTCAGAGGTGTTGGG
GCTTCCTTGCAGGCCGTTACTCCGAAACCAAACGGAAGTCCACGATTGAA
ATCTGTTCCATCTATTTCGAAGCCAGCCAAAGCCGCACCCATTTCTATAA
GTCCATCTCCAAATACACCATCGTGGCTCAAAGGCACCTACAAGCCTCAA
CCACCGTCTACAGCGCCGCTTTCTACCGTCGAGAAGTGGTGCGAACATCG
AATCAACTCTATCAAAGCCACCGTCGAAGACTCGGGGACGGAAGATAGTG
GTGATGATATACCGGAACTTCGTCAGGTAATGTTGGATTTAGATTCTAAG
AGTGTTCCTACCGAGATCCAAGTTCTCCAAGGCCTTAGAAAGGATTACTG
GAGAGCCGAAGAGAGACAAAGGAAGGCAATGGCCGAATTGAGAAAGGCAG
AGCGTGATGTGATGCGAATTGAACCCCCAGCAATGCACATTGAGAGTAAA
GTTACCAGGCTTCGAAGATATGCTAAATTTATTGAAAGCGGATGGATGGA
TGAAGACGTACTGGACATGACTAAGTCCGATAATGTGATCGAGTCGAAGG
GCGAAGACATTCCCATCAAAAATGAAGAGGAAGTAGTGCCACCCAATAAT
GTTAAGGTGGAACCCGAGATCAAATAA
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protein sequence of Gvermi11997.t1

>Gvermi11997.t1 ID=Gvermi11997.t1|Name=Gvermi11997.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=259bp
MLGIVVGTWTSMAIGGVTKMIVKAAFTVAISLFGTIVPSVGTMHTVRGVG
ASLQAVTPKPNGSPRLKSVPSISKPAKAAPISISPSPNTPSWLKGTYKPQ
PPSTAPLSTVEKWCEHRINSIKATVEDSGTEDSGDDIPELRQVMLDLDSK
SVPTEIQVLQGLRKDYWRAEERQRKAMAELRKAERDVMRIEPPAMHIESK
VTRLRRYAKFIESGWMDEDVLDMTKSDNVIESKGEDIPIKNEEEVVPPNN
VKVEPEIK*
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mRNA from alignment at ScGOVlb_3404:2844159..2846771-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11997.t1 ID=Gvermi11997.t1|Name=Gvermi11997.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2613bp|location=Sequence derived from alignment at ScGOVlb_3404:2844159..2846771- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGGGAATCGTTGTTGGGACTTGGACTAGCATGGCAATCGGAGGTGT
TACGAAGATGATTGTTAAAGCCGCTTTTACTGTTGCCATATCGTTGTTTG
GTACCATTGTGCCCAGTGTTGGTACAATGCACACCGTCAGAGGTGTTGGG
GCTTCCTTGCAGGCCGTTACTCCGAAACCGTTTCCACTTGTTCTCGGCCC
GCTTGCAACTATTGCAGCTAGGGTCAAATGAATGCTGCACTACAAGGCGT
GGAAGCTTCCCATGTGTGGTAATCATCGAAGGGTTAGAATGAGCAGCCTA
AAGATTTGCATTACCTTTTTTCTTCTATACTGCGGATGCTGTGCTTTAGG
TACTTCGTAACACAGTGGAGAGCTGTCTTTGGGATATTTCTCTTTCCTCA
CGTAAACCAGACTCCATGCGGAGCTTCTCGTGTTACCTTTTTGACCAATT
TACAACTGTTTTCTTGAGGGTGCATTAACTTTCAATGAATACAAGCATCG
TCGCATTCGTCGCCTTTTTCTTCTTCTTTGTCTGGGACGGTGTTCAACAT
TGCATTATTTGTCTGCAACTCTTATTCGTCCTGTTCACAGACGGCATCGA
ATCGGATCAGAATGAACTGTGCCGTAGCAAGGGCAAGGTTCGTTTCGAGA
TCGAGTCATTCACCAGGTGAGCAAAAGGCGCAATGCACCAAAAACCAAAG
CCACGACATGATGCACATTTTGAATAGATGCGACCCATCGAAGCCTTTTC
GACCGTGAAAAGAGTTTCAAATCCGTGAACAAGTGGTCTCTGCTGGTCAT
AGAGCGGAACCGCAGGATGATGCTCTGGAACTCAACGTCACTTTCCTGAA
GGGATGCTACGCCTCACTGTGACTTGGAAACGCAAGATGTGATTCAAATA
AAGAATAGTCATTTTCGCGCCCACGTTGTTCATCGCTCCGGGATCAATAA
CCCTTCCACTCAGAGGCGTTTCTTTCCTTCCTTACGAGAAATTGTCCCAT
CTTAGTAGGAAGAAATCGTCAATAGGACCGAAAATTTAGAAATATTTGGT
TGATCTGTAAAGCCGAGAGAGGGTCTTCTCGCCTTTACGGCGCGAAAAAC
CGATAGGGAGAAGGAGAGTCAACCCTCACCAACCTAAAGATGGGTAGAAT
GTGAGCGGCTAACCCTGTACCATGGATATAAGTTTGGGTACGTCCATCTA
CATGTGAGTATTGACAACTCTACCACTGCCTGCGCTGATCGAGTTTGATT
GGGATCGAGCTTTGTTTGTACGGTACGCAGTAAAAGGGGTACGTTACGTC
ATCGTCAATTCTTAATTTATCTGAAATAACTTTGGTAGAGCTTTATTTAA
TTTCAAGAGCCTGAAGACGAGGCAGTCTCTTTTGCGTGGTGCAGGACTCA
ACAGAAACGTTGGCCGCCTTCTTTACATGGTCCGTAATCCACTTGCAGGA
AGCCAATTTACTTTACCTTCGCACCACGCATTCCATATCATCCCTGGCTT
GATTTCCACGGTCAGCCAGCCCGGGGAAATGAGTCGTCCGATAGGGAAGC
TGTACGGTTTTGAACTACAACGCCGGAGCACAAAATCGCCGTATTTCACA
ACCCAAGGTTCTTCTTGAAGTTTCGCCTGTCAACGGCAGCCTGATTCTGT
TTGCCTTGCTACATCCAACCCTTTCCTTTTCATACTAGGAATTGTATCTA
AGGGTTTCAAGATCTTTTTTCCGACTGCCGTTATTCAGCAATGAGTGGCG
GCCCACCACCAACTTCCAACCGTCAGAAAACCCCACAGTCTCCGCAAAAC
TCTCACCAACCCCCTCACGTATTATCACTACAACTTCCTCAAGCCTCTTC
CTCACAGTTACCATTACATGGTACACGACCCGCGGGTCGACCTGCTCCTC
ATACGCCTCGCTACTATCGATCATCGAGTCAGGGTTATTCCGCTTCCATT
GGATGGACGCCCCGCTCCGTATCGTCTCCCCGTACTTCGCAACGAACCTA
CCGTGCTTTGCCTAGAAACGGAAGTCCACGATTGAAATCTGTTCCATCTA
TTTCGAAGCCAGCCAAAGCCGCACCCATTTCTATAAGTCCATCTCCAAAT
ACACCATCGTGGCTCAAAGGCACCTACAAGCCTCAACCACCGTCTACAGC
GCCGCTTTCTACCGTCGAGAAGTGGTGCGAACATCGAATCAACTCTATCA
AAGCCACCGTCGAAGACTCGGGGACGGAAGATAGTGGTGATGATATACCG
GAACTTCGTCAGGTAATGTTGGATTTAGATTCTAAGAGTGTTCCTACCGA
GATCCAAGTTCTCCAAGGCCTTAGAAAGGATTACTGGAGAGCCGAAGAGA
GACAAAGGAAGGCAATGGCCGAATTGAGAAAGGCAGAGCGTGATGTGATG
CGAATTGAACCCCCAGCAATGCACATTGAGAGTAAAGTTACCAGGCTTCG
AAGATATGCTAAATTTATTGAAAGCGGATGGATGGATGAAGACGTACTGG
ACATGACTAAGTCCGATAATGTGATCGAGTCGAAGGGCGAAGACATTCCC
ATCAAAAATGAAGAGGAAGTAGTGCCACCCAATAATGTTAAGGTGGAACC
CGAGATCAAATAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2844159..2846771-

>Gvermi11997.t1 ID=Gvermi11997.t1|Name=Gvermi11997.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=777bp|location=Sequence derived from alignment at ScGOVlb_3404:2844159..2846771- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGGGAATCGTTGTTGGGACTTGGACTAGCATGGCAATCGGAGGTGT
TACGAAGATGATTGTTAAAGCCGCTTTTACTGTTGCCATATCGTTGTTTG
GTACCATTGTGCCCAGTGTTGGTACAATGCACACCGTCAGAGGTGTTGGG
GCTTCCTTGCAGGCCGTTACTCCGAAACCAAACGGAAGTCCACGATTGAA
ATCTGTTCCATCTATTTCGAAGCCAGCCAAAGCCGCACCCATTTCTATAA
GTCCATCTCCAAATACACCATCGTGGCTCAAAGGCACCTACAAGCCTCAA
CCACCGTCTACAGCGCCGCTTTCTACCGTCGAGAAGTGGTGCGAACATCG
AATCAACTCTATCAAAGCCACCGTCGAAGACTCGGGGACGGAAGATAGTG
GTGATGATATACCGGAACTTCGTCAGGTAATGTTGGATTTAGATTCTAAG
AGTGTTCCTACCGAGATCCAAGTTCTCCAAGGCCTTAGAAAGGATTACTG
GAGAGCCGAAGAGAGACAAAGGAAGGCAATGGCCGAATTGAGAAAGGCAG
AGCGTGATGTGATGCGAATTGAACCCCCAGCAATGCACATTGAGAGTAAA
GTTACCAGGCTTCGAAGATATGCTAAATTTATTGAAAGCGGATGGATGGA
TGAAGACGTACTGGACATGACTAAGTCCGATAATGTGATCGAGTCGAAGG
GCGAAGACATTCCCATCAAAAATGAAGAGGAAGTAGTGCCACCCAATAAT
GTTAAGGTGGAACCCGAGATCAAATAA
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