Gvermi11995.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi11995.t1
Unique Name	Gvermi11995.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	484

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:2838925..2840376 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMM174CT
PFAMs	DUF647
Max annot lvl	2759\|Eukaryota
Evalue	7.39e-47
EggNOG OGs	KOG4249@1\|root,KOG4249@2759\|Eukaryota
Description	response to UV-B
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi11995	Gvermi11995	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 2838925..2840376 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11995.t1.start1	Gvermi11995.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 2838925..2838927 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11995.t1.CDS1	Gvermi11995.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 2838925..2840376 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11995.t1.exon1	Gvermi11995.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 2838925..2840376 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11995.t1.stop1	Gvermi11995.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 2840374..2840376 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11995.t1	Gvermi11995.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 2838925..2840376 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:2838925..2840376+
coding sequence from alignment at ScGOVlb_3404:2838925..2840376+

mRNA sequence

>Gvermi11995.t1 ID=Gvermi11995.t1|Name=Gvermi11995.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=484bp
MNCAFVSLLSPLPSRSRCHPISSTRQRRTSVVFASADPVRSPPIPSPPKE
IPPRLPVLIERTKESVYELDLNTLVVQPAQEKQPSNPSPPPQQIGSIRSL
FYTLLPTGYPDTVQPGYLHWAMWHIGRHVFRQSYYVLGTTSLLSSLGLST
STSLAFGATLKWVLKDGLGMGTKLLLSTSLARLVDADPKRFRMLGDTMMA
CAALIEVLSVLNPQYFLAFGAIAGLLREAAGAMSGPAYRVFLDSFAGRNN
IGDVSSRGEAQVVIGNLLGLGLGVLIRQRLDALQGGVRLVATLAAFTPLA
ASHLFCTRNAVRTVRLRTLNWQRVNLILDEYLSNAYVPDVESINRSERLL
LVGNARRLRNRIICGASLKDFENVAYQVASLVKEMEQEHVIVVFNGAKVG
VILENNAKVEDMIFGLLWARKLLSIVDAECEPGNHSDFVHQSLIWASKNL
HSMLEGLREQGWSTEKLLIPLGGSRYTMSEKNE*

spliced messenger RNA

>Gvermi11995.t1 ID=Gvermi11995.t1|Name=Gvermi11995.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1452bp|location=Sequence derived from alignment at ScGOVlb_3404:2838925..2840376+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTGCGCGTTCGTTTCTCTTCTGTCTCCTCTTCCGTCTCGCTCCAG
ATGTCATCCCATCTCCTCCACGCGTCAGAGGCGAACAAGCGTGGTCTTCG
CTTCGGCAGACCCCGTCAGGTCGCCGCCAATACCTTCGCCGCCGAAAGAA
ATTCCGCCCCGCCTACCGGTTTTGATAGAGCGCACTAAAGAAAGCGTGTA
TGAACTGGACCTGAATACATTAGTTGTGCAACCCGCCCAGGAGAAACAGC
CGTCTAATCCCAGTCCTCCCCCGCAACAAATAGGCTCCATTCGCTCGCTT
TTCTACACATTGCTGCCGACTGGGTATCCAGATACTGTTCAACCTGGTTA
TCTCCACTGGGCTATGTGGCATATTGGCCGGCACGTATTTCGACAATCCT
ATTACGTTCTTGGCACCACCTCTCTTTTGTCGAGCTTAGGGCTTTCGACA
AGTACCTCTTTGGCATTTGGGGCTACTTTGAAATGGGTGCTGAAGGATGG
GCTGGGCATGGGCACCAAACTACTTCTGTCTACATCCCTGGCAAGACTCG
TGGACGCCGATCCTAAGCGCTTTCGCATGTTGGGCGATACAATGATGGCG
TGCGCCGCTCTTATAGAAGTGCTTTCAGTTTTGAATCCGCAATACTTTCT
CGCGTTTGGAGCCATTGCAGGCCTCCTGCGAGAGGCTGCGGGCGCAATGA
GCGGGCCGGCTTATCGAGTTTTTCTCGACTCTTTTGCTGGGAGAAATAAT
ATTGGGGATGTTTCGAGTAGAGGGGAAGCCCAAGTCGTTATCGGCAACTT
GTTAGGTTTAGGACTGGGTGTACTCATCAGGCAGAGACTGGACGCCCTGC
AAGGAGGAGTGCGACTTGTTGCAACTTTGGCTGCCTTCACACCTCTTGCG
GCGTCGCATCTATTTTGTACAAGAAATGCTGTGCGCACGGTGCGATTGAG
AACACTTAATTGGCAGAGAGTTAATCTTATTCTCGATGAATATTTAAGTA
ATGCATATGTCCCTGATGTGGAGAGCATCAATCGTTCTGAACGTTTGCTC
CTGGTAGGAAATGCACGAAGACTGCGAAATCGGATCATTTGCGGTGCTAG
CCTAAAGGATTTCGAGAATGTCGCATACCAGGTCGCAAGTTTGGTGAAGG
AAATGGAGCAAGAACATGTTATCGTCGTTTTCAACGGAGCCAAAGTCGGT
GTGATACTGGAGAATAATGCAAAAGTTGAAGACATGATTTTTGGCCTGTT
ATGGGCAAGAAAACTTCTCTCAATTGTGGATGCGGAATGTGAACCGGGAA
ACCATTCCGATTTTGTACATCAAAGCCTTATCTGGGCAAGCAAGAACCTT
CATTCAATGTTGGAGGGCTTACGAGAACAAGGGTGGTCAACGGAGAAACT
GCTGATCCCTTTAGGAGGATCCAGGTACACAATGAGCGAAAAGAATGAAT
GA

protein sequence of Gvermi11995.t1

>Gvermi11995.t1 ID=Gvermi11995.t1|Name=Gvermi11995.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=484bp
MNCAFVSLLSPLPSRSRCHPISSTRQRRTSVVFASADPVRSPPIPSPPKE
IPPRLPVLIERTKESVYELDLNTLVVQPAQEKQPSNPSPPPQQIGSIRSL
FYTLLPTGYPDTVQPGYLHWAMWHIGRHVFRQSYYVLGTTSLLSSLGLST
STSLAFGATLKWVLKDGLGMGTKLLLSTSLARLVDADPKRFRMLGDTMMA
CAALIEVLSVLNPQYFLAFGAIAGLLREAAGAMSGPAYRVFLDSFAGRNN
IGDVSSRGEAQVVIGNLLGLGLGVLIRQRLDALQGGVRLVATLAAFTPLA
ASHLFCTRNAVRTVRLRTLNWQRVNLILDEYLSNAYVPDVESINRSERLL
LVGNARRLRNRIICGASLKDFENVAYQVASLVKEMEQEHVIVVFNGAKVG
VILENNAKVEDMIFGLLWARKLLSIVDAECEPGNHSDFVHQSLIWASKNL
HSMLEGLREQGWSTEKLLIPLGGSRYTMSEKNE*

mRNA from alignment at ScGOVlb_3404:2838925..2840376+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi11995.t1 ID=Gvermi11995.t1|Name=Gvermi11995.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1452bp|location=Sequence derived from alignment at ScGOVlb_3404:2838925..2840376+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACTGCGCGTTCGTTTCTCTTCTGTCTCCTCTTCCGTCTCGCTCCAG
ATGTCATCCCATCTCCTCCACGCGTCAGAGGCGAACAAGCGTGGTCTTCG
CTTCGGCAGACCCCGTCAGGTCGCCGCCAATACCTTCGCCGCCGAAAGAA
ATTCCGCCCCGCCTACCGGTTTTGATAGAGCGCACTAAAGAAAGCGTGTA
TGAACTGGACCTGAATACATTAGTTGTGCAACCCGCCCAGGAGAAACAGC
CGTCTAATCCCAGTCCTCCCCCGCAACAAATAGGCTCCATTCGCTCGCTT
TTCTACACATTGCTGCCGACTGGGTATCCAGATACTGTTCAACCTGGTTA
TCTCCACTGGGCTATGTGGCATATTGGCCGGCACGTATTTCGACAATCCT
ATTACGTTCTTGGCACCACCTCTCTTTTGTCGAGCTTAGGGCTTTCGACA
AGTACCTCTTTGGCATTTGGGGCTACTTTGAAATGGGTGCTGAAGGATGG
GCTGGGCATGGGCACCAAACTACTTCTGTCTACATCCCTGGCAAGACTCG
TGGACGCCGATCCTAAGCGCTTTCGCATGTTGGGCGATACAATGATGGCG
TGCGCCGCTCTTATAGAAGTGCTTTCAGTTTTGAATCCGCAATACTTTCT
CGCGTTTGGAGCCATTGCAGGCCTCCTGCGAGAGGCTGCGGGCGCAATGA
GCGGGCCGGCTTATCGAGTTTTTCTCGACTCTTTTGCTGGGAGAAATAAT
ATTGGGGATGTTTCGAGTAGAGGGGAAGCCCAAGTCGTTATCGGCAACTT
GTTAGGTTTAGGACTGGGTGTACTCATCAGGCAGAGACTGGACGCCCTGC
AAGGAGGAGTGCGACTTGTTGCAACTTTGGCTGCCTTCACACCTCTTGCG
GCGTCGCATCTATTTTGTACAAGAAATGCTGTGCGCACGGTGCGATTGAG
AACACTTAATTGGCAGAGAGTTAATCTTATTCTCGATGAATATTTAAGTA
ATGCATATGTCCCTGATGTGGAGAGCATCAATCGTTCTGAACGTTTGCTC
CTGGTAGGAAATGCACGAAGACTGCGAAATCGGATCATTTGCGGTGCTAG
CCTAAAGGATTTCGAGAATGTCGCATACCAGGTCGCAAGTTTGGTGAAGG
AAATGGAGCAAGAACATGTTATCGTCGTTTTCAACGGAGCCAAAGTCGGT
GTGATACTGGAGAATAATGCAAAAGTTGAAGACATGATTTTTGGCCTGTT
ATGGGCAAGAAAACTTCTCTCAATTGTGGATGCGGAATGTGAACCGGGAA
ACCATTCCGATTTTGTACATCAAAGCCTTATCTGGGCAAGCAAGAACCTT
CATTCAATGTTGGAGGGCTTACGAGAACAAGGGTGGTCAACGGAGAAACT
GCTGATCCCTTTAGGAGGATCCAGGTACACAATGAGCGAAAAGAATGAAT
GA

Coding sequence (CDS) from alignment at ScGOVlb_3404:2838925..2840376+

>Gvermi11995.t1 ID=Gvermi11995.t1|Name=Gvermi11995.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1452bp|location=Sequence derived from alignment at ScGOVlb_3404:2838925..2840376+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACTGCGCGTTCGTTTCTCTTCTGTCTCCTCTTCCGTCTCGCTCCAG
ATGTCATCCCATCTCCTCCACGCGTCAGAGGCGAACAAGCGTGGTCTTCG
CTTCGGCAGACCCCGTCAGGTCGCCGCCAATACCTTCGCCGCCGAAAGAA
ATTCCGCCCCGCCTACCGGTTTTGATAGAGCGCACTAAAGAAAGCGTGTA
TGAACTGGACCTGAATACATTAGTTGTGCAACCCGCCCAGGAGAAACAGC
CGTCTAATCCCAGTCCTCCCCCGCAACAAATAGGCTCCATTCGCTCGCTT
TTCTACACATTGCTGCCGACTGGGTATCCAGATACTGTTCAACCTGGTTA
TCTCCACTGGGCTATGTGGCATATTGGCCGGCACGTATTTCGACAATCCT
ATTACGTTCTTGGCACCACCTCTCTTTTGTCGAGCTTAGGGCTTTCGACA
AGTACCTCTTTGGCATTTGGGGCTACTTTGAAATGGGTGCTGAAGGATGG
GCTGGGCATGGGCACCAAACTACTTCTGTCTACATCCCTGGCAAGACTCG
TGGACGCCGATCCTAAGCGCTTTCGCATGTTGGGCGATACAATGATGGCG
TGCGCCGCTCTTATAGAAGTGCTTTCAGTTTTGAATCCGCAATACTTTCT
CGCGTTTGGAGCCATTGCAGGCCTCCTGCGAGAGGCTGCGGGCGCAATGA
GCGGGCCGGCTTATCGAGTTTTTCTCGACTCTTTTGCTGGGAGAAATAAT
ATTGGGGATGTTTCGAGTAGAGGGGAAGCCCAAGTCGTTATCGGCAACTT
GTTAGGTTTAGGACTGGGTGTACTCATCAGGCAGAGACTGGACGCCCTGC
AAGGAGGAGTGCGACTTGTTGCAACTTTGGCTGCCTTCACACCTCTTGCG
GCGTCGCATCTATTTTGTACAAGAAATGCTGTGCGCACGGTGCGATTGAG
AACACTTAATTGGCAGAGAGTTAATCTTATTCTCGATGAATATTTAAGTA
ATGCATATGTCCCTGATGTGGAGAGCATCAATCGTTCTGAACGTTTGCTC
CTGGTAGGAAATGCACGAAGACTGCGAAATCGGATCATTTGCGGTGCTAG
CCTAAAGGATTTCGAGAATGTCGCATACCAGGTCGCAAGTTTGGTGAAGG
AAATGGAGCAAGAACATGTTATCGTCGTTTTCAACGGAGCCAAAGTCGGT
GTGATACTGGAGAATAATGCAAAAGTTGAAGACATGATTTTTGGCCTGTT
ATGGGCAAGAAAACTTCTCTCAATTGTGGATGCGGAATGTGAACCGGGAA
ACCATTCCGATTTTGTACATCAAAGCCTTATCTGGGCAAGCAAGAACCTT
CATTCAATGTTGGAGGGCTTACGAGAACAAGGGTGGTCAACGGAGAAACT
GCTGATCCCTTTAGGAGGATCCAGGTACACAATGAGCGAAAAGAATGAAT
GA