Gvermi11992.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi11992.t1
Unique Name	Gvermi11992.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	600

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:2823987..2825786 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi11992	Gvermi11992	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 2823987..2825786 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11992.t1.start1	Gvermi11992.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 2823987..2823989 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11992.t1.CDS1	Gvermi11992.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 2823987..2825786 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11992.t1.exon1	Gvermi11992.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 2823987..2825786 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11992.t1.stop1	Gvermi11992.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 2825784..2825786 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11992.t1	Gvermi11992.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 2823987..2825786 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:2823987..2825786+
coding sequence from alignment at ScGOVlb_3404:2823987..2825786+

mRNA sequence

>Gvermi11992.t1 ID=Gvermi11992.t1|Name=Gvermi11992.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=600bp
MSHHFEKAPPLPREPTALNVPAAMRPSAAEPEPLPTAAAPPPPKFPSLTD
VGLPSAQAAAAELYQSPAAPAPEPAATQLDSQPSQQQTPFAMPLSPDDIR
AAIERDSVTPGTGAKKADEIGHSIWTDQDQETLDRLLKEGQSVYVPPDVV
SNDLMVSRASDYIYVPVPAEGLDDFSQDSSVSSRINSWNQVVSKEQDKSA
SLVPAAAAVGTGAAVTTASLASSAPEQTRAASSAQHRGVSVDIAPAPPAD
QAHTGIVPAEDDAPQTQQSQPLPSPAVDAQAPEEGTSPRRMEQTATIPDE
KVDKAAPVPTQSKSFDASTSIFANNFITVPVKSHVPMSEKEKMKAMSADS
QQAGKPTQVKLKDDATAEIKVLKDRGLKGGHDSKVNDAAFMDDTTLITGG
DDGKVCIWDLQAEQVRSEFIPYDGQSVTMVYPIPDDDATQPLTLMTFSKQ
REMRIWTVDSAQAVLLRTTTIQQSDKDLYMSIPFISKDLKARAAAAVAAA
AVTTTDTPQEDTPQEDTPQEDTTGSPLDAPPAPSPPEETTPDEDKAYGAQ
EASGAQEGTEALAGAPESETKEEEKERKRFSLTKVLSFGRSGGRKAVAS*

spliced messenger RNA

>Gvermi11992.t1 ID=Gvermi11992.t1|Name=Gvermi11992.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1800bp|location=Sequence derived from alignment at ScGOVlb_3404:2823987..2825786+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCATCACTTCGAAAAAGCGCCGCCGCTTCCGCGCGAGCCAACCGC
ACTCAATGTCCCGGCTGCCATGCGCCCCTCCGCAGCTGAGCCCGAAccgc
tccccaccgccgccgcccccccgccgccCAAATTCCCTTCCCTAACTGAT
GTTGGTTTACCTTCCGCGCAAGCTGCAGCCGCAGAGCTGTACCAGTCTCC
GGCCGCGCCAGCCCCCGAGCCAGCGGCCACCCAGCTTGACTCGCAACCGA
GCCAACAACAAACGCCCTTCGCTATGCCGCTCAGCCCCGACGACATTCGC
GCTGCCATCGAAAGAGATTCCGTCACTCCGGGCACGGGCGCGAAGAAAGC
CGACGAGATTGGCCATAGCATATGGACTGACCAGGACCAGGAGACCCTCG
ACAGGTTGCTCAAGGAAGGGCAATCCGTCTACGTTCCGCCTGATGTCGTC
AGTAACGATTTGATGGTGTCACGTGCCTCCGACTACATATACGTCCCGGT
CCCGGCGGAAGGCCTTGATGACTTTTCCCAAGACAGTTCCGTTTCGTCCC
GTATCAATTCATGGAATCAAGTCGTTTCAAAAGAGCAGGATAAATCAGCT
TCGCTTGTGCCCGCCGCCGCGGCCGTTGGTACCGGCGCGGCCGTCACCAC
TGCTTCTCTCGCTTCTTCAGCCCCCGAACAGACGCGCGCTGCATCTAGCG
CTCAACATCGTGGCGTTTCCGTTGATATTGCGCCGGCGCCCCCCGCTGAT
CAAGCGCACACTGGCATCGTCCCCGCGGAGGACGACGCCCCGCAAACTCA
ACAGTCGCAGCCTCTTCCCTCGCCTGCTGTTGACGCTCAGGCTCCAGAGG
AGGGCACTTCTCCGCGTCGCATGGAACAAACTGCCACCATTCCCGACGAG
AAAGTGGACAAGGCTGCGCCTGTTCCCACGCAATCGAAGAGCTTCGATGC
CTCTACTAGTATCTTTGCGAATAACTTCATCACTGTGCCAGTCAAGTCTC
ATGTTCCTATGTCTGAGAAGGAGAAGATGAAGGCTATGAGCGCTGATTCT
CAGCAGGCAGGAAAGCCAACGCAAGTCAAACTCAAAGACGATGCCACTGC
CGAGATAAAGGTTCTCAAAGACCGCGGTTTGAAAGGCGGACACGATTCAA
AGGTGAATGACGCCGCCTTTATGGACGACACTACGCTCATTACCGGTGGG
GATGATGGAAAAGTTTGCATTTGGGATCTCCAGGCAGAGCAAGTTCGAAG
CGAATTCATCCCGTACGACGGCCAGTCGGTTACCATGGTATACCCTATAC
CGGATGATGACGCGACGCAGCCGCTTACCCTGATGACCTTCTCAAAGCAG
AGGGAAATGAGGATCTGGACCGTTGATTCCGCACAGGCAGTTCTTCTTCG
AACTACAACCATTCAACAGAGTGATAAGGACCTCTACATGAGCATACCTT
TCATTTCGAAGGACCTCAAGGCGAGAGCTGCGGCCGCAGTGGCTGCAGCT
GCCGTCACCACGACGGACACGCCTCAAGAGGATACGCCTCAAGAGGACAC
GCCTCAAGAGGACACAACTGGGAGTCCACTGGATGCCCCGCCGGCACCCT
CTCCACCAGAGGAGACCACACCCGATGAAGACAAAGCTTACGGTGCACAG
GAAGCCTCGGGTGCGCAGGAAGGCACTGAAGCTCTAGCTGGCGCTCCTGA
GTCGGAAACGAAGGAAGAAGAGAAGGAGAGAAAGAGATTTTCACTGACAA
AAGTGCTTAGCTTTGGTCGCAGTGGCGGCAGAAAGGCCGTGGCAAGCTAG

protein sequence of Gvermi11992.t1

>Gvermi11992.t1 ID=Gvermi11992.t1|Name=Gvermi11992.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=600bp
MSHHFEKAPPLPREPTALNVPAAMRPSAAEPEPLPTAAAPPPPKFPSLTD
VGLPSAQAAAAELYQSPAAPAPEPAATQLDSQPSQQQTPFAMPLSPDDIR
AAIERDSVTPGTGAKKADEIGHSIWTDQDQETLDRLLKEGQSVYVPPDVV
SNDLMVSRASDYIYVPVPAEGLDDFSQDSSVSSRINSWNQVVSKEQDKSA
SLVPAAAAVGTGAAVTTASLASSAPEQTRAASSAQHRGVSVDIAPAPPAD
QAHTGIVPAEDDAPQTQQSQPLPSPAVDAQAPEEGTSPRRMEQTATIPDE
KVDKAAPVPTQSKSFDASTSIFANNFITVPVKSHVPMSEKEKMKAMSADS
QQAGKPTQVKLKDDATAEIKVLKDRGLKGGHDSKVNDAAFMDDTTLITGG
DDGKVCIWDLQAEQVRSEFIPYDGQSVTMVYPIPDDDATQPLTLMTFSKQ
REMRIWTVDSAQAVLLRTTTIQQSDKDLYMSIPFISKDLKARAAAAVAAA
AVTTTDTPQEDTPQEDTPQEDTTGSPLDAPPAPSPPEETTPDEDKAYGAQ
EASGAQEGTEALAGAPESETKEEEKERKRFSLTKVLSFGRSGGRKAVAS*

mRNA from alignment at ScGOVlb_3404:2823987..2825786+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi11992.t1 ID=Gvermi11992.t1|Name=Gvermi11992.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1800bp|location=Sequence derived from alignment at ScGOVlb_3404:2823987..2825786+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGCATCACTTCGAAAAAGCGCCGCCGCTTCCGCGCGAGCCAACCGC
ACTCAATGTCCCGGCTGCCATGCGCCCCTCCGCAGCTGAGCCCGAAccgc
tccccaccgccgccgcccccccgccgccCAAATTCCCTTCCCTAACTGAT
GTTGGTTTACCTTCCGCGCAAGCTGCAGCCGCAGAGCTGTACCAGTCTCC
GGCCGCGCCAGCCCCCGAGCCAGCGGCCACCCAGCTTGACTCGCAACCGA
GCCAACAACAAACGCCCTTCGCTATGCCGCTCAGCCCCGACGACATTCGC
GCTGCCATCGAAAGAGATTCCGTCACTCCGGGCACGGGCGCGAAGAAAGC
CGACGAGATTGGCCATAGCATATGGACTGACCAGGACCAGGAGACCCTCG
ACAGGTTGCTCAAGGAAGGGCAATCCGTCTACGTTCCGCCTGATGTCGTC
AGTAACGATTTGATGGTGTCACGTGCCTCCGACTACATATACGTCCCGGT
CCCGGCGGAAGGCCTTGATGACTTTTCCCAAGACAGTTCCGTTTCGTCCC
GTATCAATTCATGGAATCAAGTCGTTTCAAAAGAGCAGGATAAATCAGCT
TCGCTTGTGCCCGCCGCCGCGGCCGTTGGTACCGGCGCGGCCGTCACCAC
TGCTTCTCTCGCTTCTTCAGCCCCCGAACAGACGCGCGCTGCATCTAGCG
CTCAACATCGTGGCGTTTCCGTTGATATTGCGCCGGCGCCCCCCGCTGAT
CAAGCGCACACTGGCATCGTCCCCGCGGAGGACGACGCCCCGCAAACTCA
ACAGTCGCAGCCTCTTCCCTCGCCTGCTGTTGACGCTCAGGCTCCAGAGG
AGGGCACTTCTCCGCGTCGCATGGAACAAACTGCCACCATTCCCGACGAG
AAAGTGGACAAGGCTGCGCCTGTTCCCACGCAATCGAAGAGCTTCGATGC
CTCTACTAGTATCTTTGCGAATAACTTCATCACTGTGCCAGTCAAGTCTC
ATGTTCCTATGTCTGAGAAGGAGAAGATGAAGGCTATGAGCGCTGATTCT
CAGCAGGCAGGAAAGCCAACGCAAGTCAAACTCAAAGACGATGCCACTGC
CGAGATAAAGGTTCTCAAAGACCGCGGTTTGAAAGGCGGACACGATTCAA
AGGTGAATGACGCCGCCTTTATGGACGACACTACGCTCATTACCGGTGGG
GATGATGGAAAAGTTTGCATTTGGGATCTCCAGGCAGAGCAAGTTCGAAG
CGAATTCATCCCGTACGACGGCCAGTCGGTTACCATGGTATACCCTATAC
CGGATGATGACGCGACGCAGCCGCTTACCCTGATGACCTTCTCAAAGCAG
AGGGAAATGAGGATCTGGACCGTTGATTCCGCACAGGCAGTTCTTCTTCG
AACTACAACCATTCAACAGAGTGATAAGGACCTCTACATGAGCATACCTT
TCATTTCGAAGGACCTCAAGGCGAGAGCTGCGGCCGCAGTGGCTGCAGCT
GCCGTCACCACGACGGACACGCCTCAAGAGGATACGCCTCAAGAGGACAC
GCCTCAAGAGGACACAACTGGGAGTCCACTGGATGCCCCGCCGGCACCCT
CTCCACCAGAGGAGACCACACCCGATGAAGACAAAGCTTACGGTGCACAG
GAAGCCTCGGGTGCGCAGGAAGGCACTGAAGCTCTAGCTGGCGCTCCTGA
GTCGGAAACGAAGGAAGAAGAGAAGGAGAGAAAGAGATTTTCACTGACAA
AAGTGCTTAGCTTTGGTCGCAGTGGCGGCAGAAAGGCCGTGGCAAGCTAG

Coding sequence (CDS) from alignment at ScGOVlb_3404:2823987..2825786+

>Gvermi11992.t1 ID=Gvermi11992.t1|Name=Gvermi11992.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1800bp|location=Sequence derived from alignment at ScGOVlb_3404:2823987..2825786+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGCATCACTTCGAAAAAGCGCCGCCGCTTCCGCGCGAGCCAACCGC
ACTCAATGTCCCGGCTGCCATGCGCCCCTCCGCAGCTGAGCCCGAAccgc
tccccaccgccgccgcccccccgccgccCAAATTCCCTTCCCTAACTGAT
GTTGGTTTACCTTCCGCGCAAGCTGCAGCCGCAGAGCTGTACCAGTCTCC
GGCCGCGCCAGCCCCCGAGCCAGCGGCCACCCAGCTTGACTCGCAACCGA
GCCAACAACAAACGCCCTTCGCTATGCCGCTCAGCCCCGACGACATTCGC
GCTGCCATCGAAAGAGATTCCGTCACTCCGGGCACGGGCGCGAAGAAAGC
CGACGAGATTGGCCATAGCATATGGACTGACCAGGACCAGGAGACCCTCG
ACAGGTTGCTCAAGGAAGGGCAATCCGTCTACGTTCCGCCTGATGTCGTC
AGTAACGATTTGATGGTGTCACGTGCCTCCGACTACATATACGTCCCGGT
CCCGGCGGAAGGCCTTGATGACTTTTCCCAAGACAGTTCCGTTTCGTCCC
GTATCAATTCATGGAATCAAGTCGTTTCAAAAGAGCAGGATAAATCAGCT
TCGCTTGTGCCCGCCGCCGCGGCCGTTGGTACCGGCGCGGCCGTCACCAC
TGCTTCTCTCGCTTCTTCAGCCCCCGAACAGACGCGCGCTGCATCTAGCG
CTCAACATCGTGGCGTTTCCGTTGATATTGCGCCGGCGCCCCCCGCTGAT
CAAGCGCACACTGGCATCGTCCCCGCGGAGGACGACGCCCCGCAAACTCA
ACAGTCGCAGCCTCTTCCCTCGCCTGCTGTTGACGCTCAGGCTCCAGAGG
AGGGCACTTCTCCGCGTCGCATGGAACAAACTGCCACCATTCCCGACGAG
AAAGTGGACAAGGCTGCGCCTGTTCCCACGCAATCGAAGAGCTTCGATGC
CTCTACTAGTATCTTTGCGAATAACTTCATCACTGTGCCAGTCAAGTCTC
ATGTTCCTATGTCTGAGAAGGAGAAGATGAAGGCTATGAGCGCTGATTCT
CAGCAGGCAGGAAAGCCAACGCAAGTCAAACTCAAAGACGATGCCACTGC
CGAGATAAAGGTTCTCAAAGACCGCGGTTTGAAAGGCGGACACGATTCAA
AGGTGAATGACGCCGCCTTTATGGACGACACTACGCTCATTACCGGTGGG
GATGATGGAAAAGTTTGCATTTGGGATCTCCAGGCAGAGCAAGTTCGAAG
CGAATTCATCCCGTACGACGGCCAGTCGGTTACCATGGTATACCCTATAC
CGGATGATGACGCGACGCAGCCGCTTACCCTGATGACCTTCTCAAAGCAG
AGGGAAATGAGGATCTGGACCGTTGATTCCGCACAGGCAGTTCTTCTTCG
AACTACAACCATTCAACAGAGTGATAAGGACCTCTACATGAGCATACCTT
TCATTTCGAAGGACCTCAAGGCGAGAGCTGCGGCCGCAGTGGCTGCAGCT
GCCGTCACCACGACGGACACGCCTCAAGAGGATACGCCTCAAGAGGACAC
GCCTCAAGAGGACACAACTGGGAGTCCACTGGATGCCCCGCCGGCACCCT
CTCCACCAGAGGAGACCACACCCGATGAAGACAAAGCTTACGGTGCACAG
GAAGCCTCGGGTGCGCAGGAAGGCACTGAAGCTCTAGCTGGCGCTCCTGA
GTCGGAAACGAAGGAAGAAGAGAAGGAGAGAAAGAGATTTTCACTGACAA
AAGTGCTTAGCTTTGGTCGCAGTGGCGGCAGAAAGGCCGTGGCAAGCTAG