Gvermi11984.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11984.t1
Unique NameGvermi11984.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length452
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2803414..2804769 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7217.FBpp0115978
Preferred nameCSGALNACT1
PFAMsCHGN
Max annot lvl33208|Metazoa
KEGG koko:K00746
KEGG ReactionR05929
KEGG Pathwayko00532,ko01100,map00532,map01100
KEGG ModuleM00058
GOsGO:0000139,GO:0000271,GO:0001501,GO:0001503,GO:0001958,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005975,GO:0005976,GO:0006022,GO:0006023,GO:0006024,GO:0006029,GO:0006040,GO:0006082,GO:0006139,GO:0006725,GO:0006790,GO:0006793,GO:0006807,GO:0006950,GO:0007275,GO:0007399,GO:0008037,GO:0008150,GO:0008152,GO:0008194,GO:0008283,GO:0008376,GO:0008955,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009611,GO:0009653,GO:0009887,GO:0009888,GO:0009987,GO:0012505,GO:0015012,GO:0015014,GO:0015020,GO:0016020,GO:0016021,GO:0016043,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0019276,GO:0019538,GO:0019752,GO:0030166,GO:0030173,GO:0030198,GO:0030201,GO:0030202,GO:0030203,GO:0030204,GO:0030206,GO:0030210,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031984,GO:0032501,GO:0032502,GO:0033692,GO:0034637,GO:0034641,GO:0034645,GO:0036075,GO:0042060,GO:0043062,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046398,GO:0046483,GO:0046872,GO:0047237,GO:0047238,GO:0048513,GO:0048705,GO:0048731,GO:0048856,GO:0050650,GO:0050651,GO:0050652,GO:0050653,GO:0050654,GO:0050655,GO:0050896,GO:0051216,GO:0055086,GO:0060348,GO:0060349,GO:0060350,GO:0061448,GO:0071704,GO:0071840,GO:0098588,GO:0098791,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1903510
Evalue3.79e-27
EggNOG OGsKOG3588@1|root,KOG3588@2759|Eukaryota,38DJN@33154|Opisthokonta,3BAVK@33208|Metazoa,3CYIJ@33213|Bilateria,41WHQ@6656|Arthropoda,3SG8J@50557|Insecta,44Z6C@7147|Diptera,45PJ9@7214|Drosophilidae
EC2.4.1.174,2.4.1.175
DescriptionAcetylgalactosaminyltransferase activity
COG categoryG
CAZyGT7
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11984Gvermi11984Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2803414..2804769 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11984.t1.stop1Gvermi11984.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2803414..2803416 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11984.t1.CDS1Gvermi11984.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2803414..2804769 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11984.t1.exon1Gvermi11984.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2803414..2804769 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11984.t1.start1Gvermi11984.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2804767..2804769 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11984.t1Gvermi11984.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2803414..2804769 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11984.t1 ID=Gvermi11984.t1|Name=Gvermi11984.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=452bp
MITRRRVSKKEIAWPRRAVSRGCKLAFIIILGVCLVSLSVVQHRSVKATI
SLDSNPPNRSMLRACAHVFPQHKNHFANAPHRTFSTFYARHLFEPHTERV
LDLRGPNEAYDDDIQDMLLISQNALRRFTGDNSVTVHNYTVGYFHLDRHF
GKRYVLHIQSSSSRTSYIRRDVLAFQNTFDGRCSVSVTGRTLQETRQKIY
LIVPYFERPVRFQWFLNQFASLRAKGQEIELILSLCGHNETDASTARRLV
HECKEVNHIQISSCTRPKFSRATCIREAIKVVSNNSVLFITDIDMYIYPA
MFDSCLLNSIKGRQVYFPVFYSLFPGKRRIEEQNGFWRDTSYGMSCMHKS
DFDVVGAYEHAETQFHGWGGEDNFLRDAFVQHPAYEIFRAVEPALRHKWH
QKVCDPTTMFFLACVKMKIRQMGVPQYLVEVLSAEGVDAEAVLAKYYQNQ
S*
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spliced messenger RNA

>Gvermi11984.t1 ID=Gvermi11984.t1|Name=Gvermi11984.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1356bp|location=Sequence derived from alignment at ScGOVlb_3404:2803414..2804769- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATAACACGACGACGCGTCAGCAAAAAAGAAATAGCCTGGCCGCGTCG
AGCAGTATCTCGTGGTTGCAAACTTGCGTTTATCATCATCCTCGGTGTTT
GTCTCGTTTCATTATCTGTAGTTCAGCATCGTTCGGTGAAGGCCACCATT
TCCCTCGATTCAAATCCACCGAACCGCTCGATGCTTCGTGCTTGTGCGCA
CGTCTTCCCACAACACAAGAACCATTTTGCCAACGCTCCGCATAGGACAT
TTTCAACGTTTTATGCCAGACATCTCTTCGAACCTCACACAGAAAGAGTT
CTAGACTTACGTGGTCCCAATGAAGCATATGACGATGATATCCAGGACAT
GTTACTGATATCGCAGAATGCCCTCAGGCGATTTACGGGCGACAACTCTG
TAACTGTTCACAACTACACTGTTGGTTACTTTCATTTAGATCGCCATTTT
GGAAAAAGATATGTGCTTCACATTCAATCTTCTTCAAGTCGAACATCCTA
TATTCGTCGCGATGTTCTCGCCTTTCAAAACACTTTTGATGGCCGCTGTT
CTGTTTCGGTCACAGGGCGCACCCTCCAGGAGACTCGGCAAAAAATTTAT
TTGATCGTACCATACTTTGAAAGACCTGTTCGATTTCAGTGGTTCTTGAA
TCAGTTTGCTTCACTGCGTGCCAAAGGTCAAGAAATAGAACTCATCCTTT
CTCTCTGTGGCCACAATGAAACGGATGCATCAACAGCTCGAAGACTTGTT
CATGAATGTAAAGAAGTGAATCACATTCAGATTTCTTCATGTACGAGACC
AAAGTTCTCTAGAGCGACATGCATCCGGGAAGCTATTAAGGTGGTTTCTA
ACAACAGTGTGCTCTTCATCACTGATATTGACATGTACATATATCCAGCA
ATGTTTGACAGTTGTCTTCTTAATTCAATCAAGGGTCGTCAAGTGTACTT
TCCTGTTTTCTACAGTCTGTTTCCCGGTAAAAGGCGAATTGAAGAGCAGA
ACGGGTTTTGGAGGGATACATCGTACGGAATGAGTTGCATGCACAAGAGT
GATTTTGATGTTGTAGGAGCATATGAACACGCTGAAACCCAATTTCACGG
ATGGGGAGGGGAAGACAACTTTCTCAGAGACGCCTTTGTACAACATCCGG
CCTACGAGATCTTTCGCGCAGTTGAGCCTGCGTTGCGGCACAAGTGGCAT
CAAAAGGTGTGCGATCCGACAACCATGTTTTTCTTAGCTTGTGTCAAAAT
GAAAATCCGCCAAATGGGCGTCCCTCAATACTTGGTTGAGGTTCTCTCCG
CAGAGGGTGTAGACGCTGAGGCGGTTCTCGCGAAATATTATCAGAACCAA
AGCTAG
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protein sequence of Gvermi11984.t1

>Gvermi11984.t1 ID=Gvermi11984.t1|Name=Gvermi11984.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=452bp
MITRRRVSKKEIAWPRRAVSRGCKLAFIIILGVCLVSLSVVQHRSVKATI
SLDSNPPNRSMLRACAHVFPQHKNHFANAPHRTFSTFYARHLFEPHTERV
LDLRGPNEAYDDDIQDMLLISQNALRRFTGDNSVTVHNYTVGYFHLDRHF
GKRYVLHIQSSSSRTSYIRRDVLAFQNTFDGRCSVSVTGRTLQETRQKIY
LIVPYFERPVRFQWFLNQFASLRAKGQEIELILSLCGHNETDASTARRLV
HECKEVNHIQISSCTRPKFSRATCIREAIKVVSNNSVLFITDIDMYIYPA
MFDSCLLNSIKGRQVYFPVFYSLFPGKRRIEEQNGFWRDTSYGMSCMHKS
DFDVVGAYEHAETQFHGWGGEDNFLRDAFVQHPAYEIFRAVEPALRHKWH
QKVCDPTTMFFLACVKMKIRQMGVPQYLVEVLSAEGVDAEAVLAKYYQNQ
S*
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mRNA from alignment at ScGOVlb_3404:2803414..2804769-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11984.t1 ID=Gvermi11984.t1|Name=Gvermi11984.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1356bp|location=Sequence derived from alignment at ScGOVlb_3404:2803414..2804769- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATAACACGACGACGCGTCAGCAAAAAAGAAATAGCCTGGCCGCGTCG
AGCAGTATCTCGTGGTTGCAAACTTGCGTTTATCATCATCCTCGGTGTTT
GTCTCGTTTCATTATCTGTAGTTCAGCATCGTTCGGTGAAGGCCACCATT
TCCCTCGATTCAAATCCACCGAACCGCTCGATGCTTCGTGCTTGTGCGCA
CGTCTTCCCACAACACAAGAACCATTTTGCCAACGCTCCGCATAGGACAT
TTTCAACGTTTTATGCCAGACATCTCTTCGAACCTCACACAGAAAGAGTT
CTAGACTTACGTGGTCCCAATGAAGCATATGACGATGATATCCAGGACAT
GTTACTGATATCGCAGAATGCCCTCAGGCGATTTACGGGCGACAACTCTG
TAACTGTTCACAACTACACTGTTGGTTACTTTCATTTAGATCGCCATTTT
GGAAAAAGATATGTGCTTCACATTCAATCTTCTTCAAGTCGAACATCCTA
TATTCGTCGCGATGTTCTCGCCTTTCAAAACACTTTTGATGGCCGCTGTT
CTGTTTCGGTCACAGGGCGCACCCTCCAGGAGACTCGGCAAAAAATTTAT
TTGATCGTACCATACTTTGAAAGACCTGTTCGATTTCAGTGGTTCTTGAA
TCAGTTTGCTTCACTGCGTGCCAAAGGTCAAGAAATAGAACTCATCCTTT
CTCTCTGTGGCCACAATGAAACGGATGCATCAACAGCTCGAAGACTTGTT
CATGAATGTAAAGAAGTGAATCACATTCAGATTTCTTCATGTACGAGACC
AAAGTTCTCTAGAGCGACATGCATCCGGGAAGCTATTAAGGTGGTTTCTA
ACAACAGTGTGCTCTTCATCACTGATATTGACATGTACATATATCCAGCA
ATGTTTGACAGTTGTCTTCTTAATTCAATCAAGGGTCGTCAAGTGTACTT
TCCTGTTTTCTACAGTCTGTTTCCCGGTAAAAGGCGAATTGAAGAGCAGA
ACGGGTTTTGGAGGGATACATCGTACGGAATGAGTTGCATGCACAAGAGT
GATTTTGATGTTGTAGGAGCATATGAACACGCTGAAACCCAATTTCACGG
ATGGGGAGGGGAAGACAACTTTCTCAGAGACGCCTTTGTACAACATCCGG
CCTACGAGATCTTTCGCGCAGTTGAGCCTGCGTTGCGGCACAAGTGGCAT
CAAAAGGTGTGCGATCCGACAACCATGTTTTTCTTAGCTTGTGTCAAAAT
GAAAATCCGCCAAATGGGCGTCCCTCAATACTTGGTTGAGGTTCTCTCCG
CAGAGGGTGTAGACGCTGAGGCGGTTCTCGCGAAATATTATCAGAACCAA
AGCTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2803414..2804769-

>Gvermi11984.t1 ID=Gvermi11984.t1|Name=Gvermi11984.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1356bp|location=Sequence derived from alignment at ScGOVlb_3404:2803414..2804769- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATAACACGACGACGCGTCAGCAAAAAAGAAATAGCCTGGCCGCGTCG
AGCAGTATCTCGTGGTTGCAAACTTGCGTTTATCATCATCCTCGGTGTTT
GTCTCGTTTCATTATCTGTAGTTCAGCATCGTTCGGTGAAGGCCACCATT
TCCCTCGATTCAAATCCACCGAACCGCTCGATGCTTCGTGCTTGTGCGCA
CGTCTTCCCACAACACAAGAACCATTTTGCCAACGCTCCGCATAGGACAT
TTTCAACGTTTTATGCCAGACATCTCTTCGAACCTCACACAGAAAGAGTT
CTAGACTTACGTGGTCCCAATGAAGCATATGACGATGATATCCAGGACAT
GTTACTGATATCGCAGAATGCCCTCAGGCGATTTACGGGCGACAACTCTG
TAACTGTTCACAACTACACTGTTGGTTACTTTCATTTAGATCGCCATTTT
GGAAAAAGATATGTGCTTCACATTCAATCTTCTTCAAGTCGAACATCCTA
TATTCGTCGCGATGTTCTCGCCTTTCAAAACACTTTTGATGGCCGCTGTT
CTGTTTCGGTCACAGGGCGCACCCTCCAGGAGACTCGGCAAAAAATTTAT
TTGATCGTACCATACTTTGAAAGACCTGTTCGATTTCAGTGGTTCTTGAA
TCAGTTTGCTTCACTGCGTGCCAAAGGTCAAGAAATAGAACTCATCCTTT
CTCTCTGTGGCCACAATGAAACGGATGCATCAACAGCTCGAAGACTTGTT
CATGAATGTAAAGAAGTGAATCACATTCAGATTTCTTCATGTACGAGACC
AAAGTTCTCTAGAGCGACATGCATCCGGGAAGCTATTAAGGTGGTTTCTA
ACAACAGTGTGCTCTTCATCACTGATATTGACATGTACATATATCCAGCA
ATGTTTGACAGTTGTCTTCTTAATTCAATCAAGGGTCGTCAAGTGTACTT
TCCTGTTTTCTACAGTCTGTTTCCCGGTAAAAGGCGAATTGAAGAGCAGA
ACGGGTTTTGGAGGGATACATCGTACGGAATGAGTTGCATGCACAAGAGT
GATTTTGATGTTGTAGGAGCATATGAACACGCTGAAACCCAATTTCACGG
ATGGGGAGGGGAAGACAACTTTCTCAGAGACGCCTTTGTACAACATCCGG
CCTACGAGATCTTTCGCGCAGTTGAGCCTGCGTTGCGGCACAAGTGGCAT
CAAAAGGTGTGCGATCCGACAACCATGTTTTTCTTAGCTTGTGTCAAAAT
GAAAATCCGCCAAATGGGCGTCCCTCAATACTTGGTTGAGGTTCTCTCCG
CAGAGGGTGTAGACGCTGAGGCGGTTCTCGCGAAATATTATCAGAACCAA
AGCTAG
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