Gvermi11983.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11983.t1
Unique NameGvermi11983.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length593
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2800516..2802294 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog554065.XP_005843316.1
PFAMsALO,FAD_binding_4
Max annot lvl3041|Chlorophyta
KEGG rclassRC00092,RC00195
KEGG koko:K00225
KEGG ReactionR00640,R07679
KEGG Pathwayko00053,ko01100,ko01110,map00053,map01100,map01110
KEGG ModuleM00114
Evalue6.44e-165
EggNOG OGsCOG0277@1|root,KOG4730@2759|Eukaryota,37JSI@33090|Viridiplantae,34H9A@3041|Chlorophyta
EC1.3.2.3
DescriptionD-arabinono-1,4-lactone oxidase
COG categoryV
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11983Gvermi11983Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2800516..2802294 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11983.t1.stop1Gvermi11983.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2800516..2800518 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11983.t1.CDS1Gvermi11983.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2800516..2802294 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11983.t1.exon1Gvermi11983.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2800516..2802294 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11983.t1.start1Gvermi11983.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2802292..2802294 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11983.t1Gvermi11983.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2800516..2802294 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11983.t1 ID=Gvermi11983.t1|Name=Gvermi11983.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=593bp
MTFFIWRSRHYLPKLLSHRVYCASPRIKDALRVSAVNHVIRNTHSSAQDS
TLSSTNIGGLAGFLALCGSSFSFSEHQEVNIKPVSEGDLQASGAQAEPQD
LINWSSTHSVFTKRYFTPETESELAQIVKQAHESRQKLRPVGSALSPNGL
GFETGGMVNLVHMDKVLKVDTGTMRVTVQAGASVNKVVEELRRYGLTLQN
FASITEQQIGGFIQVGAHGTGARIPPVDEQVVGLRVVTPGAGILSLSADD
EDPSLFQVARTAMGMFGVVSEVTLQCVPMHRLVENTFVLSPREVKERHSE
LLEKNRHLRYMWIPYTDTVVVVTCNPLTSDANEQGPVHSQSDRTYEARRL
LKTHARCKLTDEQVDELSFTTIRDELLVLDPLNVEWIRKINEAEASYWRK
SQGVRIDWSDKILQFDCGGQQWVSEVAFAVPKGSQDAVDVNYVCNLLDLI
EREKVPAPAPIEQRWTAPSHSPMSPAAERPGQALGSMYSWVGIIMYLPDA
EVDPKLRQAITESFKKYKTLCEQHLWPQVRAVEHWAKIEMPQSAEEKAML
RMRTEQKFPVQAFVAICDIMDPNGILRNELMDSIVGKRTVGE*
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spliced messenger RNA

>Gvermi11983.t1 ID=Gvermi11983.t1|Name=Gvermi11983.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1779bp|location=Sequence derived from alignment at ScGOVlb_3404:2800516..2802294- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTTCTTTATCTGGCGTTCACGGCATTATCTACCAAAACTGTTGTC
GCATCGGGTATACTGCGCTTCGCCGCGGATCAAGGACGCACTGCGTGTTT
CTGCAGTAAATCATGTCATTCGAAACACACATTCAAGCGCACAGGACTCA
ACTCTATCTTCCACTAATATTGGAGGTTTGGCAGGTTTTTTAGCTCTATG
CGGCTCCAGTTTTTCTTTTTCCGAGCATCAAGAAGTCAACATAAAACCGG
TTTCAGAGGGAGACCTACAAGCATCAGGCGCTCAGGCTGAGCCTCAGGAT
CTGATAAACTGGTCTTCAACGCACTCCGTTTTCACGAAGCGGTACTTCAC
ACCTGAGACAGAATCGGAGTTGGCTCAAATAGTGAAACAGGCTCACGAGA
GCAGGCAGAAACTGAGACCCGTAGGATCAGCTCTTTCTCCCAATGGGTTG
GGATTTGAAACGGGCGGAATGGTCAACCTAGTTCACATGGATAAGGTCTT
GAAGGTAGATACCGGAACAATGCGTGTCACAGTGCAAGCAGGAGCTTCTG
TGAACAAAGTCGTAGAAGAGCTGCGAAGATATGGACTCACGCTCCAAAAT
TTTGCATCGATAACTGAACAACAAATCGGTGGCTTTATTCAAGTTGGCGC
TCATGGTACTGGTGCCCGAATACCCCCAGTAGATGAACAGGTGGTTGGCC
TCCGCGTTGTCACACCTGGGGCCGGAATTTTGAGTTTGTCTGCAGATGAT
GAAGATCCTAGCTTGTTTCAAGTTGCTCGAACTGCGATGGGTATGTTTGG
AGTCGTCTCTGAGGTCACTCTCCAATGCGTACCTATGCATCGGCTGGTTG
AAAATACCTTTGTTTTGTCACCAAGAGAGGTTAAGGAGCGTCATAGCGAG
CTTTTGGAGAAGAACAGACATTTGCGGTATATGTGGATTCCATACACTGA
TACAGTTGTGGTTGTAACCTGCAACCCACTGACGAGCGATGCCAATGAGC
AGGGCCCTGTACATAGTCAGTCCGACCGTACGTACGAAGCCAGACGATTA
CTCAAGACACATGCTCGGTGCAAGCTTACGGATGAGCAGGTCGACGAGCT
TTCTTTCACCACAATCCGGGATGAGCTCTTGGTTCTTGATCCTCTCAATG
TTGAATGGATCCGAAAGATAAATGAAGCCGAAGCTTCATACTGGCGCAAG
TCTCAAGGCGTTCGAATTGACTGGTCCGATAAGATCCTCCAGTTTGATTG
CGGTGGACAACAATGGGTTTCAGAGGTTGCATTTGCAGTGCCAAAGGGTT
CTCAAGACGCAGTTGATGTCAATTACGTGTGCAATCTTCTCGATCTCATT
GAACGCGAAAAGGTTCCTGCACCTGCTCCAATCGAACAACGTTGGACAGC
TCCGAGTCATTCCCCGATGTCGCCCGCAGCTGAGAGACCTGGGCAAGCGC
TCGGTAGTATGTACTCGTGGGTAGGAATCATCATGTATCTACCAGATGCT
GAGGTTGATCCAAAATTACGGCAGGCCATAACGGAATCATTCAAGAAATA
CAAAACGCTTTGTGAACAGCACCTTTGGCCACAAGTAAGAGCAGTTGAAC
ACTGGGCAAAGATTGAGATGCCTCAAAGCGCCGAGGAGAAAGCCATGCTG
AGAATGCGAACCGAGCAGAAGTTCCCAGTACAGGCATTCGTTGCCATTTG
TGATATTATGGATCCTAATGGTATATTAAGAAATGAGCTCATGGATAGTA
TTGTTGGCAAGAGGACAGTAGGAGAGTAA
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protein sequence of Gvermi11983.t1

>Gvermi11983.t1 ID=Gvermi11983.t1|Name=Gvermi11983.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=593bp
MTFFIWRSRHYLPKLLSHRVYCASPRIKDALRVSAVNHVIRNTHSSAQDS
TLSSTNIGGLAGFLALCGSSFSFSEHQEVNIKPVSEGDLQASGAQAEPQD
LINWSSTHSVFTKRYFTPETESELAQIVKQAHESRQKLRPVGSALSPNGL
GFETGGMVNLVHMDKVLKVDTGTMRVTVQAGASVNKVVEELRRYGLTLQN
FASITEQQIGGFIQVGAHGTGARIPPVDEQVVGLRVVTPGAGILSLSADD
EDPSLFQVARTAMGMFGVVSEVTLQCVPMHRLVENTFVLSPREVKERHSE
LLEKNRHLRYMWIPYTDTVVVVTCNPLTSDANEQGPVHSQSDRTYEARRL
LKTHARCKLTDEQVDELSFTTIRDELLVLDPLNVEWIRKINEAEASYWRK
SQGVRIDWSDKILQFDCGGQQWVSEVAFAVPKGSQDAVDVNYVCNLLDLI
EREKVPAPAPIEQRWTAPSHSPMSPAAERPGQALGSMYSWVGIIMYLPDA
EVDPKLRQAITESFKKYKTLCEQHLWPQVRAVEHWAKIEMPQSAEEKAML
RMRTEQKFPVQAFVAICDIMDPNGILRNELMDSIVGKRTVGE*
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mRNA from alignment at ScGOVlb_3404:2800516..2802294-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11983.t1 ID=Gvermi11983.t1|Name=Gvermi11983.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1779bp|location=Sequence derived from alignment at ScGOVlb_3404:2800516..2802294- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGTTCTTTATCTGGCGTTCACGGCATTATCTACCAAAACTGTTGTC
GCATCGGGTATACTGCGCTTCGCCGCGGATCAAGGACGCACTGCGTGTTT
CTGCAGTAAATCATGTCATTCGAAACACACATTCAAGCGCACAGGACTCA
ACTCTATCTTCCACTAATATTGGAGGTTTGGCAGGTTTTTTAGCTCTATG
CGGCTCCAGTTTTTCTTTTTCCGAGCATCAAGAAGTCAACATAAAACCGG
TTTCAGAGGGAGACCTACAAGCATCAGGCGCTCAGGCTGAGCCTCAGGAT
CTGATAAACTGGTCTTCAACGCACTCCGTTTTCACGAAGCGGTACTTCAC
ACCTGAGACAGAATCGGAGTTGGCTCAAATAGTGAAACAGGCTCACGAGA
GCAGGCAGAAACTGAGACCCGTAGGATCAGCTCTTTCTCCCAATGGGTTG
GGATTTGAAACGGGCGGAATGGTCAACCTAGTTCACATGGATAAGGTCTT
GAAGGTAGATACCGGAACAATGCGTGTCACAGTGCAAGCAGGAGCTTCTG
TGAACAAAGTCGTAGAAGAGCTGCGAAGATATGGACTCACGCTCCAAAAT
TTTGCATCGATAACTGAACAACAAATCGGTGGCTTTATTCAAGTTGGCGC
TCATGGTACTGGTGCCCGAATACCCCCAGTAGATGAACAGGTGGTTGGCC
TCCGCGTTGTCACACCTGGGGCCGGAATTTTGAGTTTGTCTGCAGATGAT
GAAGATCCTAGCTTGTTTCAAGTTGCTCGAACTGCGATGGGTATGTTTGG
AGTCGTCTCTGAGGTCACTCTCCAATGCGTACCTATGCATCGGCTGGTTG
AAAATACCTTTGTTTTGTCACCAAGAGAGGTTAAGGAGCGTCATAGCGAG
CTTTTGGAGAAGAACAGACATTTGCGGTATATGTGGATTCCATACACTGA
TACAGTTGTGGTTGTAACCTGCAACCCACTGACGAGCGATGCCAATGAGC
AGGGCCCTGTACATAGTCAGTCCGACCGTACGTACGAAGCCAGACGATTA
CTCAAGACACATGCTCGGTGCAAGCTTACGGATGAGCAGGTCGACGAGCT
TTCTTTCACCACAATCCGGGATGAGCTCTTGGTTCTTGATCCTCTCAATG
TTGAATGGATCCGAAAGATAAATGAAGCCGAAGCTTCATACTGGCGCAAG
TCTCAAGGCGTTCGAATTGACTGGTCCGATAAGATCCTCCAGTTTGATTG
CGGTGGACAACAATGGGTTTCAGAGGTTGCATTTGCAGTGCCAAAGGGTT
CTCAAGACGCAGTTGATGTCAATTACGTGTGCAATCTTCTCGATCTCATT
GAACGCGAAAAGGTTCCTGCACCTGCTCCAATCGAACAACGTTGGACAGC
TCCGAGTCATTCCCCGATGTCGCCCGCAGCTGAGAGACCTGGGCAAGCGC
TCGGTAGTATGTACTCGTGGGTAGGAATCATCATGTATCTACCAGATGCT
GAGGTTGATCCAAAATTACGGCAGGCCATAACGGAATCATTCAAGAAATA
CAAAACGCTTTGTGAACAGCACCTTTGGCCACAAGTAAGAGCAGTTGAAC
ACTGGGCAAAGATTGAGATGCCTCAAAGCGCCGAGGAGAAAGCCATGCTG
AGAATGCGAACCGAGCAGAAGTTCCCAGTACAGGCATTCGTTGCCATTTG
TGATATTATGGATCCTAATGGTATATTAAGAAATGAGCTCATGGATAGTA
TTGTTGGCAAGAGGACAGTAGGAGAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2800516..2802294-

>Gvermi11983.t1 ID=Gvermi11983.t1|Name=Gvermi11983.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1779bp|location=Sequence derived from alignment at ScGOVlb_3404:2800516..2802294- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGTTCTTTATCTGGCGTTCACGGCATTATCTACCAAAACTGTTGTC
GCATCGGGTATACTGCGCTTCGCCGCGGATCAAGGACGCACTGCGTGTTT
CTGCAGTAAATCATGTCATTCGAAACACACATTCAAGCGCACAGGACTCA
ACTCTATCTTCCACTAATATTGGAGGTTTGGCAGGTTTTTTAGCTCTATG
CGGCTCCAGTTTTTCTTTTTCCGAGCATCAAGAAGTCAACATAAAACCGG
TTTCAGAGGGAGACCTACAAGCATCAGGCGCTCAGGCTGAGCCTCAGGAT
CTGATAAACTGGTCTTCAACGCACTCCGTTTTCACGAAGCGGTACTTCAC
ACCTGAGACAGAATCGGAGTTGGCTCAAATAGTGAAACAGGCTCACGAGA
GCAGGCAGAAACTGAGACCCGTAGGATCAGCTCTTTCTCCCAATGGGTTG
GGATTTGAAACGGGCGGAATGGTCAACCTAGTTCACATGGATAAGGTCTT
GAAGGTAGATACCGGAACAATGCGTGTCACAGTGCAAGCAGGAGCTTCTG
TGAACAAAGTCGTAGAAGAGCTGCGAAGATATGGACTCACGCTCCAAAAT
TTTGCATCGATAACTGAACAACAAATCGGTGGCTTTATTCAAGTTGGCGC
TCATGGTACTGGTGCCCGAATACCCCCAGTAGATGAACAGGTGGTTGGCC
TCCGCGTTGTCACACCTGGGGCCGGAATTTTGAGTTTGTCTGCAGATGAT
GAAGATCCTAGCTTGTTTCAAGTTGCTCGAACTGCGATGGGTATGTTTGG
AGTCGTCTCTGAGGTCACTCTCCAATGCGTACCTATGCATCGGCTGGTTG
AAAATACCTTTGTTTTGTCACCAAGAGAGGTTAAGGAGCGTCATAGCGAG
CTTTTGGAGAAGAACAGACATTTGCGGTATATGTGGATTCCATACACTGA
TACAGTTGTGGTTGTAACCTGCAACCCACTGACGAGCGATGCCAATGAGC
AGGGCCCTGTACATAGTCAGTCCGACCGTACGTACGAAGCCAGACGATTA
CTCAAGACACATGCTCGGTGCAAGCTTACGGATGAGCAGGTCGACGAGCT
TTCTTTCACCACAATCCGGGATGAGCTCTTGGTTCTTGATCCTCTCAATG
TTGAATGGATCCGAAAGATAAATGAAGCCGAAGCTTCATACTGGCGCAAG
TCTCAAGGCGTTCGAATTGACTGGTCCGATAAGATCCTCCAGTTTGATTG
CGGTGGACAACAATGGGTTTCAGAGGTTGCATTTGCAGTGCCAAAGGGTT
CTCAAGACGCAGTTGATGTCAATTACGTGTGCAATCTTCTCGATCTCATT
GAACGCGAAAAGGTTCCTGCACCTGCTCCAATCGAACAACGTTGGACAGC
TCCGAGTCATTCCCCGATGTCGCCCGCAGCTGAGAGACCTGGGCAAGCGC
TCGGTAGTATGTACTCGTGGGTAGGAATCATCATGTATCTACCAGATGCT
GAGGTTGATCCAAAATTACGGCAGGCCATAACGGAATCATTCAAGAAATA
CAAAACGCTTTGTGAACAGCACCTTTGGCCACAAGTAAGAGCAGTTGAAC
ACTGGGCAAAGATTGAGATGCCTCAAAGCGCCGAGGAGAAAGCCATGCTG
AGAATGCGAACCGAGCAGAAGTTCCCAGTACAGGCATTCGTTGCCATTTG
TGATATTATGGATCCTAATGGTATATTAAGAAATGAGCTCATGGATAGTA
TTGTTGGCAAGAGGACAGTAGGAGAGTAA
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