Gvermi11980.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11980.t1
Unique NameGvermi11980.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length456
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2788373..2789740 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703597.1
PFAMsTubulin,Tubulin_C
Max annot lvl2759|Eukaryota
KEGG koko:K07375
KEGG Pathwayko04145,ko04540,ko05130,map04145,map04540,map05130
GOsGO:0003674,GO:0005198,GO:0005200,GO:0005575,GO:0005622,GO:0005623,GO:0005813,GO:0005815,GO:0005856,GO:0005874,GO:0006996,GO:0007010,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0071840,GO:0099080,GO:0099081,GO:0099512,GO:0099513
Evalue2.49e-237
EggNOG OGsCOG5023@1|root,KOG1375@2759|Eukaryota
Descriptionstructural constituent of cytoskeleton
COG categoryZ
BRITEko00000,ko00001,ko03036,ko04147,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11980Gvermi11980Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2788373..2789740 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11980.t1.stop1Gvermi11980.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2788373..2788375 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11980.t1.CDS1Gvermi11980.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2788373..2789740 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11980.t1.exon1Gvermi11980.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2788373..2789740 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11980.t1.start1Gvermi11980.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2789738..2789740 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11980.t1Gvermi11980.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2788373..2789740 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11980.t1 ID=Gvermi11980.t1|Name=Gvermi11980.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=456bp
MTRSIVSLQAGQCGNQVGANFWEGISAEHGINADGAFDGDKPDQQLERIS
VYYNESSNGRYVPRATMVDLEPGVIDVIKNSPRGQLFRPDNFVYGQSGAG
NNWAKGHYTEGAELVEMCLDVIRREAETCDVLQGFQVTHSLGGGTGSGLG
TLLVSKIREEFPDRMMCTYSVLPSPKVSNTVVEPYNCTLSIHQLIENADA
VFAIDNEALFNICVRSLEVDKPSYSHLNRLVSSVMSGITCSLRFPGQLNA
DLRKLAVNLIPFPRLHFFAVGHAPLASPDSHSYRSLSVPELAGQMFDRNN
MMAEVDPRDGRYLTAAVYFRGKVSTKEVEDEMALMQSKNSAYFVEWIPHN
IKTSVCDIPAKGEKISSAFIGNTTAIQSIFIRVGDQFRSMFKKKAFLHWY
MGEGMDELEFTEAESNMADLVSEYQQYSEATADTHDQSDEYGDEYANGVG
EEEEE*
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spliced messenger RNA

>Gvermi11980.t1 ID=Gvermi11980.t1|Name=Gvermi11980.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1368bp|location=Sequence derived from alignment at ScGOVlb_3404:2788373..2789740- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCGCAGCATCGTCTCGTTGCAGGCCGGCCAGTGCGGAAACCAGGT
CGGCGCCAACTTCTGGGAGGGCATCTCCGCAGAGCACGGCATCAACGCCG
ACGGCGCCTTTGACGGCGACAAGCCCGATCAGCAGCTGGAACGCATCTCC
GTGTACTACAATGAGAGCTCCAACGGGCGCTATGTGCCGCGCGCCACCAT
GGTCGACCTCGAGCCCGGCGTCATCGACGTGATCAAAAACTCCCCCCGCG
GCCAGCTCTTCCGCCCGGACAACTTTGTGTACGGCCAGTCCGGCGCCGGC
AACAACTGGGCAAAGGGCCACTACACCGAGGGCGCCGAGCTCGTCGAGAT
GTGCCTGGACGTCATCCGCCGCGAGGCCGAGACGTGCGACGTGCTGCAGG
GCTTCCAGGTCACCCACTCGCTGGGCGGCGGCACCGGCTCCGGCCTGGGC
ACGCTGCTGGTGTCCAAGATCCGCGAGGAGTTCCCCGACCGCATGATGTG
CACCTACTCGGTGCTGCCGTCGCCCAAGGTGTCCAACACCGTCGTGGAGC
CGTACAACTGCACGCTGTCCATCCACCAGCTCATCGAGAACGCCGACGCC
GTGTTTGCCATCGACAACGAGGCGCTGTTCAACATCTGCGTGCGCAGCCT
GGAAGTGGACAAGCCGTCGTACTCGCACCTCAACCGGCTGGTGTCCAGCG
TCATGTCCGGCATCACGTGCTCGCTGCGCTTCCCCGGCCAGCTCAACGCC
GACCTGCGCAAGCTGGCCGTCAACCTCATCCCGTTCCCGCGCCTGCACTT
CTTCGCCGTGGGCCACGCGCCGCTGGCGTCGCCCGACTCGCACAGCTACC
GCTCGCTCAGCGTGCCGGAGCTGGCCGGGCAGATGTTTGACCGCAACAAC
ATGATGGCCGAGGTGGACCCGCGCGACGGCAGGTACCTCACGGCGGCCGT
GTACTTTCGCGGAAAGGTCAGCACCAAGGAGGTGGAGGACGAGATGGCGC
TCATGCAGAGCAAGAACTCGGCGTACTTTGTGGAGTGGATCCCGCACAAC
ATCAAGACGTCCGTGTGCGACATCCCGGCCAAGGGCGAGAAGATCTCGTC
GGCGTTCATCGGCAACACCACCGCCATCCAGTCCATCTTCATCCGCGTGG
GCGACCAGTTCCGCTCCATGTTCAAGAAGAAGGCTTTCCTGCACTGGTAC
ATGGGCGAGGGCATGGACGAGCTGGAGTTCACGGAGGCCGAGTCCAACAT
GGCCGACCTGGTGTCGGAGTACCAGCAGTACTCGGAGGCGACGGCCGACA
CGCACGACCAATCGGACGAGTACGGCGACGAGTACGCCAACGGGGTGGGC
GAGGAGGAGGAGGAGTAG
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protein sequence of Gvermi11980.t1

>Gvermi11980.t1 ID=Gvermi11980.t1|Name=Gvermi11980.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=456bp
MTRSIVSLQAGQCGNQVGANFWEGISAEHGINADGAFDGDKPDQQLERIS
VYYNESSNGRYVPRATMVDLEPGVIDVIKNSPRGQLFRPDNFVYGQSGAG
NNWAKGHYTEGAELVEMCLDVIRREAETCDVLQGFQVTHSLGGGTGSGLG
TLLVSKIREEFPDRMMCTYSVLPSPKVSNTVVEPYNCTLSIHQLIENADA
VFAIDNEALFNICVRSLEVDKPSYSHLNRLVSSVMSGITCSLRFPGQLNA
DLRKLAVNLIPFPRLHFFAVGHAPLASPDSHSYRSLSVPELAGQMFDRNN
MMAEVDPRDGRYLTAAVYFRGKVSTKEVEDEMALMQSKNSAYFVEWIPHN
IKTSVCDIPAKGEKISSAFIGNTTAIQSIFIRVGDQFRSMFKKKAFLHWY
MGEGMDELEFTEAESNMADLVSEYQQYSEATADTHDQSDEYGDEYANGVG
EEEEE*
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mRNA from alignment at ScGOVlb_3404:2788373..2789740-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11980.t1 ID=Gvermi11980.t1|Name=Gvermi11980.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1368bp|location=Sequence derived from alignment at ScGOVlb_3404:2788373..2789740- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTCGCAGCATCGTCTCGTTGCAGGCCGGCCAGTGCGGAAACCAGGT
CGGCGCCAACTTCTGGGAGGGCATCTCCGCAGAGCACGGCATCAACGCCG
ACGGCGCCTTTGACGGCGACAAGCCCGATCAGCAGCTGGAACGCATCTCC
GTGTACTACAATGAGAGCTCCAACGGGCGCTATGTGCCGCGCGCCACCAT
GGTCGACCTCGAGCCCGGCGTCATCGACGTGATCAAAAACTCCCCCCGCG
GCCAGCTCTTCCGCCCGGACAACTTTGTGTACGGCCAGTCCGGCGCCGGC
AACAACTGGGCAAAGGGCCACTACACCGAGGGCGCCGAGCTCGTCGAGAT
GTGCCTGGACGTCATCCGCCGCGAGGCCGAGACGTGCGACGTGCTGCAGG
GCTTCCAGGTCACCCACTCGCTGGGCGGCGGCACCGGCTCCGGCCTGGGC
ACGCTGCTGGTGTCCAAGATCCGCGAGGAGTTCCCCGACCGCATGATGTG
CACCTACTCGGTGCTGCCGTCGCCCAAGGTGTCCAACACCGTCGTGGAGC
CGTACAACTGCACGCTGTCCATCCACCAGCTCATCGAGAACGCCGACGCC
GTGTTTGCCATCGACAACGAGGCGCTGTTCAACATCTGCGTGCGCAGCCT
GGAAGTGGACAAGCCGTCGTACTCGCACCTCAACCGGCTGGTGTCCAGCG
TCATGTCCGGCATCACGTGCTCGCTGCGCTTCCCCGGCCAGCTCAACGCC
GACCTGCGCAAGCTGGCCGTCAACCTCATCCCGTTCCCGCGCCTGCACTT
CTTCGCCGTGGGCCACGCGCCGCTGGCGTCGCCCGACTCGCACAGCTACC
GCTCGCTCAGCGTGCCGGAGCTGGCCGGGCAGATGTTTGACCGCAACAAC
ATGATGGCCGAGGTGGACCCGCGCGACGGCAGGTACCTCACGGCGGCCGT
GTACTTTCGCGGAAAGGTCAGCACCAAGGAGGTGGAGGACGAGATGGCGC
TCATGCAGAGCAAGAACTCGGCGTACTTTGTGGAGTGGATCCCGCACAAC
ATCAAGACGTCCGTGTGCGACATCCCGGCCAAGGGCGAGAAGATCTCGTC
GGCGTTCATCGGCAACACCACCGCCATCCAGTCCATCTTCATCCGCGTGG
GCGACCAGTTCCGCTCCATGTTCAAGAAGAAGGCTTTCCTGCACTGGTAC
ATGGGCGAGGGCATGGACGAGCTGGAGTTCACGGAGGCCGAGTCCAACAT
GGCCGACCTGGTGTCGGAGTACCAGCAGTACTCGGAGGCGACGGCCGACA
CGCACGACCAATCGGACGAGTACGGCGACGAGTACGCCAACGGGGTGGGC
GAGGAGGAGGAGGAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2788373..2789740-

>Gvermi11980.t1 ID=Gvermi11980.t1|Name=Gvermi11980.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1368bp|location=Sequence derived from alignment at ScGOVlb_3404:2788373..2789740- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTCGCAGCATCGTCTCGTTGCAGGCCGGCCAGTGCGGAAACCAGGT
CGGCGCCAACTTCTGGGAGGGCATCTCCGCAGAGCACGGCATCAACGCCG
ACGGCGCCTTTGACGGCGACAAGCCCGATCAGCAGCTGGAACGCATCTCC
GTGTACTACAATGAGAGCTCCAACGGGCGCTATGTGCCGCGCGCCACCAT
GGTCGACCTCGAGCCCGGCGTCATCGACGTGATCAAAAACTCCCCCCGCG
GCCAGCTCTTCCGCCCGGACAACTTTGTGTACGGCCAGTCCGGCGCCGGC
AACAACTGGGCAAAGGGCCACTACACCGAGGGCGCCGAGCTCGTCGAGAT
GTGCCTGGACGTCATCCGCCGCGAGGCCGAGACGTGCGACGTGCTGCAGG
GCTTCCAGGTCACCCACTCGCTGGGCGGCGGCACCGGCTCCGGCCTGGGC
ACGCTGCTGGTGTCCAAGATCCGCGAGGAGTTCCCCGACCGCATGATGTG
CACCTACTCGGTGCTGCCGTCGCCCAAGGTGTCCAACACCGTCGTGGAGC
CGTACAACTGCACGCTGTCCATCCACCAGCTCATCGAGAACGCCGACGCC
GTGTTTGCCATCGACAACGAGGCGCTGTTCAACATCTGCGTGCGCAGCCT
GGAAGTGGACAAGCCGTCGTACTCGCACCTCAACCGGCTGGTGTCCAGCG
TCATGTCCGGCATCACGTGCTCGCTGCGCTTCCCCGGCCAGCTCAACGCC
GACCTGCGCAAGCTGGCCGTCAACCTCATCCCGTTCCCGCGCCTGCACTT
CTTCGCCGTGGGCCACGCGCCGCTGGCGTCGCCCGACTCGCACAGCTACC
GCTCGCTCAGCGTGCCGGAGCTGGCCGGGCAGATGTTTGACCGCAACAAC
ATGATGGCCGAGGTGGACCCGCGCGACGGCAGGTACCTCACGGCGGCCGT
GTACTTTCGCGGAAAGGTCAGCACCAAGGAGGTGGAGGACGAGATGGCGC
TCATGCAGAGCAAGAACTCGGCGTACTTTGTGGAGTGGATCCCGCACAAC
ATCAAGACGTCCGTGTGCGACATCCCGGCCAAGGGCGAGAAGATCTCGTC
GGCGTTCATCGGCAACACCACCGCCATCCAGTCCATCTTCATCCGCGTGG
GCGACCAGTTCCGCTCCATGTTCAAGAAGAAGGCTTTCCTGCACTGGTAC
ATGGGCGAGGGCATGGACGAGCTGGAGTTCACGGAGGCCGAGTCCAACAT
GGCCGACCTGGTGTCGGAGTACCAGCAGTACTCGGAGGCGACGGCCGACA
CGCACGACCAATCGGACGAGTACGGCGACGAGTACGCCAACGGGGTGGGC
GAGGAGGAGGAGGAGTAG
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