Gvermi11979.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11979.t1
Unique NameGvermi11979.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length263
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2783076..2783864 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S343_45V6.1
PFAMsLum_binding
Max annot lvl35493|Streptophyta
KEGG rclassRC00958,RC00960
KEGG koko:K00793
KEGG ReactionR00066
KEGG Pathwayko00740,ko01100,ko01110,map00740,map01100,map01110
KEGG ModuleM00125
GOsGO:0003674,GO:0003824,GO:0004746,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue3.49e-73
EggNOG OGsCOG0307@1|root,KOG3310@2759|Eukaryota,37QCE@33090|Viridiplantae,3G8MU@35493|Streptophyta
EC2.5.1.9
Descriptionriboflavin
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11979Gvermi11979Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2783076..2783864 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11979.t1.stop1Gvermi11979.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2783076..2783078 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11979.t1.CDS1Gvermi11979.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2783076..2783864 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11979.t1.exon1Gvermi11979.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2783076..2783864 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11979.t1.start1Gvermi11979.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2783862..2783864 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11979.t1Gvermi11979.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2783076..2783864 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11979.t1 ID=Gvermi11979.t1|Name=Gvermi11979.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=263bp
MWGTIDTAFISAGFPHRLARTKRAFICGTRPSKLASAAWSTHRQLLGGRK
ISSRGVTMVFTGIVEEMGTVQRIENIDSEEGGVTLSVEADKTLQGVKLGD
SISVNGTCLTVTHLHDRCVMFGLAPETLRRTNLGQLQSGCKVNLERSVAA
DGRFGGHVVQGHVDCTGIITDIKREKDAIWFTINIEAEYMKYLVEKGYVA
VDGTSLTVCDVMDDESSFTFMMIPFTQAHVVIALKEVGERVNIEVDITGK
YIERILALKGVS*
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spliced messenger RNA

>Gvermi11979.t1 ID=Gvermi11979.t1|Name=Gvermi11979.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=789bp|location=Sequence derived from alignment at ScGOVlb_3404:2783076..2783864- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGGGGACAATCGATACGGCGTTCATATCGGCGGGATTTCCTCACCG
GCTTGCGAGAACGAAGCGCGCTTTCATATGCGGGACGCGGCCCAGCAAGC
TCGCAAGTGCGGCTTGGAGCACCCACAGGCAGCTGCTCGGAGGCAGAAAA
ATATCCAGCCGGGGCGTCACGATGGTGTTCACTGGAATTGTGGAGGAAAT
GGGGACAGTGCAAAGAATTGAGAACATTGACTCGGAAGAGGGAGGCGTGA
CATTGAGCGTAGAGGCCGATAAAACGTTGCAAGGTGTTAAGTTGGGCGAT
AGTATTTCGGTCAACGGAACGTGTCTAACAGTGACTCACCTTCATGATCG
GTGCGTTATGTTCGGGCTCGCGCCAGAGACATTGCGAAGGACAAATCTCG
GGCAGTTACAATCTGGATGTAAGGTAAATTTGGAACGGAGCGTAGCTGCA
GACGGGCGATTTGGCGGACACGTTGTCCAGGGCCATGTGGATTGCACTGG
AATCATCACAGACATCAAGAGAGAGAAGGACGCTATCTGGTTCACAATAA
ACATTGAAGCAGAGTATATGAAGTACCTTGTGGAAAAAGGGTATGTTGCG
GTGGATGGAACGAGCCTGACTGTGTGCGATGTGATGGACGACGAAAGCTC
ATTCACGTTTATGATGATTCCATTTACTCAAGCTCACGTTGTAATAGCTC
TGAAAGAGGTGGGAGAGAGGGTGAACATCGAAGTAGACATAACTGGGAAG
TACATTGAAAGAATACTGGCCTTAAAGGGGGTGTCGTAG
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protein sequence of Gvermi11979.t1

>Gvermi11979.t1 ID=Gvermi11979.t1|Name=Gvermi11979.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=263bp
MWGTIDTAFISAGFPHRLARTKRAFICGTRPSKLASAAWSTHRQLLGGRK
ISSRGVTMVFTGIVEEMGTVQRIENIDSEEGGVTLSVEADKTLQGVKLGD
SISVNGTCLTVTHLHDRCVMFGLAPETLRRTNLGQLQSGCKVNLERSVAA
DGRFGGHVVQGHVDCTGIITDIKREKDAIWFTINIEAEYMKYLVEKGYVA
VDGTSLTVCDVMDDESSFTFMMIPFTQAHVVIALKEVGERVNIEVDITGK
YIERILALKGVS*
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mRNA from alignment at ScGOVlb_3404:2783076..2783864-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11979.t1 ID=Gvermi11979.t1|Name=Gvermi11979.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=789bp|location=Sequence derived from alignment at ScGOVlb_3404:2783076..2783864- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGGGGGACAATCGATACGGCGTTCATATCGGCGGGATTTCCTCACCG
GCTTGCGAGAACGAAGCGCGCTTTCATATGCGGGACGCGGCCCAGCAAGC
TCGCAAGTGCGGCTTGGAGCACCCACAGGCAGCTGCTCGGAGGCAGAAAA
ATATCCAGCCGGGGCGTCACGATGGTGTTCACTGGAATTGTGGAGGAAAT
GGGGACAGTGCAAAGAATTGAGAACATTGACTCGGAAGAGGGAGGCGTGA
CATTGAGCGTAGAGGCCGATAAAACGTTGCAAGGTGTTAAGTTGGGCGAT
AGTATTTCGGTCAACGGAACGTGTCTAACAGTGACTCACCTTCATGATCG
GTGCGTTATGTTCGGGCTCGCGCCAGAGACATTGCGAAGGACAAATCTCG
GGCAGTTACAATCTGGATGTAAGGTAAATTTGGAACGGAGCGTAGCTGCA
GACGGGCGATTTGGCGGACACGTTGTCCAGGGCCATGTGGATTGCACTGG
AATCATCACAGACATCAAGAGAGAGAAGGACGCTATCTGGTTCACAATAA
ACATTGAAGCAGAGTATATGAAGTACCTTGTGGAAAAAGGGTATGTTGCG
GTGGATGGAACGAGCCTGACTGTGTGCGATGTGATGGACGACGAAAGCTC
ATTCACGTTTATGATGATTCCATTTACTCAAGCTCACGTTGTAATAGCTC
TGAAAGAGGTGGGAGAGAGGGTGAACATCGAAGTAGACATAACTGGGAAG
TACATTGAAAGAATACTGGCCTTAAAGGGGGTGTCGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2783076..2783864-

>Gvermi11979.t1 ID=Gvermi11979.t1|Name=Gvermi11979.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=789bp|location=Sequence derived from alignment at ScGOVlb_3404:2783076..2783864- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGGGGGACAATCGATACGGCGTTCATATCGGCGGGATTTCCTCACCG
GCTTGCGAGAACGAAGCGCGCTTTCATATGCGGGACGCGGCCCAGCAAGC
TCGCAAGTGCGGCTTGGAGCACCCACAGGCAGCTGCTCGGAGGCAGAAAA
ATATCCAGCCGGGGCGTCACGATGGTGTTCACTGGAATTGTGGAGGAAAT
GGGGACAGTGCAAAGAATTGAGAACATTGACTCGGAAGAGGGAGGCGTGA
CATTGAGCGTAGAGGCCGATAAAACGTTGCAAGGTGTTAAGTTGGGCGAT
AGTATTTCGGTCAACGGAACGTGTCTAACAGTGACTCACCTTCATGATCG
GTGCGTTATGTTCGGGCTCGCGCCAGAGACATTGCGAAGGACAAATCTCG
GGCAGTTACAATCTGGATGTAAGGTAAATTTGGAACGGAGCGTAGCTGCA
GACGGGCGATTTGGCGGACACGTTGTCCAGGGCCATGTGGATTGCACTGG
AATCATCACAGACATCAAGAGAGAGAAGGACGCTATCTGGTTCACAATAA
ACATTGAAGCAGAGTATATGAAGTACCTTGTGGAAAAAGGGTATGTTGCG
GTGGATGGAACGAGCCTGACTGTGTGCGATGTGATGGACGACGAAAGCTC
ATTCACGTTTATGATGATTCCATTTACTCAAGCTCACGTTGTAATAGCTC
TGAAAGAGGTGGGAGAGAGGGTGAACATCGAAGTAGACATAACTGGGAAG
TACATTGAAAGAATACTGGCCTTAAAGGGGGTGTCGTAG
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