Gvermi11975.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11975.t1
Unique NameGvermi11975.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length472
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2776306..2777721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703396.1
Preferred nameSEC61A1
PFAMsPlug_translocon,SecY
Max annot lvl2759|Eukaryota
KEGG koko:K10956
KEGG TC3.A.5.4,3.A.5.8,3.A.5.9
KEGG Pathwayko03060,ko04141,ko04145,ko05110,map03060,map04141,map04145,map05110
KEGG ModuleM00401
GOsGO:0000322,GO:0000323,GO:0000324,GO:0001655,GO:0001700,GO:0001822,GO:0002009,GO:0002376,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005783,GO:0005784,GO:0005789,GO:0005791,GO:0005829,GO:0005886,GO:0006508,GO:0006511,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006620,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006952,GO:0006955,GO:0006996,GO:0007029,GO:0007275,GO:0007391,GO:0007399,GO:0007417,GO:0007420,GO:0008104,GO:0008150,GO:0008152,GO:0008258,GO:0008320,GO:0008565,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009615,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010033,GO:0010243,GO:0010256,GO:0010498,GO:0010506,GO:0010507,GO:0010941,GO:0010942,GO:0010959,GO:0012505,GO:0012506,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016331,GO:0017038,GO:0019222,GO:0019538,GO:0019941,GO:0021536,GO:0021538,GO:0021986,GO:0022804,GO:0022857,GO:0022884,GO:0030139,GO:0030163,GO:0030176,GO:0030433,GO:0030659,GO:0030666,GO:0030670,GO:0030867,GO:0030900,GO:0030970,GO:0031090,GO:0031204,GO:0031224,GO:0031227,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032527,GO:0032879,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0033554,GO:0034097,GO:0034341,GO:0034613,GO:0034756,GO:0034758,GO:0034759,GO:0034761,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0034976,GO:0036503,GO:0039019,GO:0042175,GO:0042221,GO:0042277,GO:0042335,GO:0042886,GO:0042887,GO:0043021,GO:0043022,GO:0043161,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0043270,GO:0043632,GO:0043900,GO:0043902,GO:0043903,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0044877,GO:0045047,GO:0045087,GO:0045169,GO:0045184,GO:0045335,GO:0046596,GO:0046598,GO:0046907,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048524,GO:0048598,GO:0048729,GO:0048731,GO:0048793,GO:0048856,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051179,GO:0051234,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0055085,GO:0060322,GO:0060429,GO:0065002,GO:0065007,GO:0070727,GO:0070843,GO:0070972,GO:0071256,GO:0071261,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072001,GO:0072006,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0097708,GO:0098586,GO:0098588,GO:0098796,GO:0098805,GO:0098827,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1903513,GO:1903900,GO:1903902,GO:1904062,GO:1904064,GO:1904680
Evalue7.69e-248
EggNOG OGsCOG0201@1|root,KOG1373@2759|Eukaryota
Descriptionprotein transport
COG categoryU
BRITEko00000,ko00001,ko00002,ko02044
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11975Gvermi11975Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2776306..2777721 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11975.t1.start1Gvermi11975.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2776306..2776308 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11975.t1.CDS1Gvermi11975.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2776306..2777721 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11975.t1.exon1Gvermi11975.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2776306..2777721 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11975.t1.stop1Gvermi11975.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2777719..2777721 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11975.t1Gvermi11975.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2776306..2777721 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11975.t1 ID=Gvermi11975.t1|Name=Gvermi11975.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=472bp
MWRAIVRPFVPLLPEIEAPNKRIAFKEKVLWTSVTLFIYLVCCQIPLYGV
KNTKASDPLYFVRAVLAASNRGTLMELGISPIITSSMIMQFLAGTRIIQV
DQGLKEDRALFSGAEKLMGLIICLVEATMYVFSGMYGDLSVLGTGNAILI
VTQLFVAGMIVLLLDELLQKGYGLGSGISLFIATNICETIVWSSLSPTTI
NIGRGKEFEGAVIAFFHLLITRDDKVRAFREALFRPELPNISNLLATVLV
FAIVIYFQGFRVDLPVKSSQVRGAQGSYPIKLFYTSNIPIILQTALVSNL
YFVSQVLYTRYPSNLLVNIMGRWTRIRDSSQMYPIGGLAYYISRPPHLRA
VFEDPLRAIVYLAFILTACGLFSKYWIDVSGSSARDVARQLKEQKMTLKG
HRETSLVKELNRYIPTAAAFGGICIGLLTIMADFLGAIGSGTGILMAVTI
IYQYFEIFAKESGSDSGLMFF*
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spliced messenger RNA

>Gvermi11975.t1 ID=Gvermi11975.t1|Name=Gvermi11975.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1416bp|location=Sequence derived from alignment at ScGOVlb_3404:2776306..2777721+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGCGCGCCATTGTGAGACCGTTCGTGCCGTTGCTGCCAGAAATTGA
AGCACCGAACAAGCGAATTGCTTTCAAAGAGAAAGTGCTATGGACGTCCG
TAACGCTTTTTATCTACCTTGTATGCTGTCAAATTCCGTTGTATGGTGTG
AAGAATACCAAGGCATCCGATCCCCTGTACTTCGTGCGAGCTGTTTTAGC
TGCATCTAATCGAGGAACCCTGATGGAGCTTGGAATCTCTCCCATTATTA
CATCATCCATGATCATGCAGTTTCTGGCTGGGACTCGAATCATCCAGGTT
GATCAGGGATTGAAGGAAGACCGTGCTTTGTTCTCAGGTGCAGAGAAGCT
CATGGGGCTCATCATCTGTCTGGTAGAGGCAACTATGTACGTGTTCTCCG
GCATGTATGGAGACCTGTCTGTTCTTGGAACAGGTAACGCAATCCTCATT
GTCACTCAACTCTTCGTTGCTGGCATGATTGTTCTGCTTTTGGACGAGCT
TCTTCAGAAAGGATATGGTCTTGGATCTGGCATTTCTCTTTTCATTGCAA
CAAACATCTGTGAAACAATCGTGTGGTCTTCCCTCTCCCCAACGACCATC
AACATTGGTCGTGGCAAAGAGTTTGAAGGTGCAGTCATTGCCTTCTTCCA
CCTTCTCATCACTCGAGATGATAAGGTGAGAGCATTCCGTGAGGCACTGT
TCCGTCCTGAGCTGCCCAACATTTCCAATCTGCTAGCTACTGTTCTCGTG
TTTGCCATCGTGATTTACTTCCAAGGCTTCCGCGTGGACCTGCCCGTGAA
GTCAAGCCAAGTGCGAGGTGCGCAAGGATCATATCCGATCAAGCTGTTCT
ACACGTCAAACATCCCAATCATTCTTCAGACTGCGCTGGTTTCCAATCTT
TACTTTGTTTCGCAAGTTCTGTACACAAGGTATCCGTCAAATCTGCTAGT
GAATATTATGGGAAGATGGACAAGAATTCGAGACTCATCGCAAATGTACC
CTATTGGAGGCCTTGCATACTACATTTCACGGCCACCGCATCTAAGAGCA
GTGTTTGAGGATCCGCTTCGTGCAATTGTGTATCTGGCATTCATTCTTAC
GGCATGCGGACTGTTCAGCAAATACTGGATTGATGTATCCGGGTCATCGG
CTCGGGACGTGGCACGACAGTTGAAGGAGCAAAAGATGACTTTGAAAGGA
CATCGTGAAACGTCGCTAGTGAAAGAGCTTAATCGGTACATCCCGACGGC
GGCTGCGTTTGGAGGAATTTGTATTGGACTTCTAACTATAATGGCTGACT
TTTTGGGAGCAATTGGGTCTGGCACTGGCATTCTTATGGCTGTGACAATC
ATCTACCAATACTTTGAGATCTTTGCCAAGGAGTCAGGAAGTGATTCTGG
TTTGATGTTCTTCTGA
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protein sequence of Gvermi11975.t1

>Gvermi11975.t1 ID=Gvermi11975.t1|Name=Gvermi11975.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=472bp
MWRAIVRPFVPLLPEIEAPNKRIAFKEKVLWTSVTLFIYLVCCQIPLYGV
KNTKASDPLYFVRAVLAASNRGTLMELGISPIITSSMIMQFLAGTRIIQV
DQGLKEDRALFSGAEKLMGLIICLVEATMYVFSGMYGDLSVLGTGNAILI
VTQLFVAGMIVLLLDELLQKGYGLGSGISLFIATNICETIVWSSLSPTTI
NIGRGKEFEGAVIAFFHLLITRDDKVRAFREALFRPELPNISNLLATVLV
FAIVIYFQGFRVDLPVKSSQVRGAQGSYPIKLFYTSNIPIILQTALVSNL
YFVSQVLYTRYPSNLLVNIMGRWTRIRDSSQMYPIGGLAYYISRPPHLRA
VFEDPLRAIVYLAFILTACGLFSKYWIDVSGSSARDVARQLKEQKMTLKG
HRETSLVKELNRYIPTAAAFGGICIGLLTIMADFLGAIGSGTGILMAVTI
IYQYFEIFAKESGSDSGLMFF*
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mRNA from alignment at ScGOVlb_3404:2776306..2777721+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11975.t1 ID=Gvermi11975.t1|Name=Gvermi11975.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1416bp|location=Sequence derived from alignment at ScGOVlb_3404:2776306..2777721+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGGCGCGCCATTGTGAGACCGTTCGTGCCGTTGCTGCCAGAAATTGA
AGCACCGAACAAGCGAATTGCTTTCAAAGAGAAAGTGCTATGGACGTCCG
TAACGCTTTTTATCTACCTTGTATGCTGTCAAATTCCGTTGTATGGTGTG
AAGAATACCAAGGCATCCGATCCCCTGTACTTCGTGCGAGCTGTTTTAGC
TGCATCTAATCGAGGAACCCTGATGGAGCTTGGAATCTCTCCCATTATTA
CATCATCCATGATCATGCAGTTTCTGGCTGGGACTCGAATCATCCAGGTT
GATCAGGGATTGAAGGAAGACCGTGCTTTGTTCTCAGGTGCAGAGAAGCT
CATGGGGCTCATCATCTGTCTGGTAGAGGCAACTATGTACGTGTTCTCCG
GCATGTATGGAGACCTGTCTGTTCTTGGAACAGGTAACGCAATCCTCATT
GTCACTCAACTCTTCGTTGCTGGCATGATTGTTCTGCTTTTGGACGAGCT
TCTTCAGAAAGGATATGGTCTTGGATCTGGCATTTCTCTTTTCATTGCAA
CAAACATCTGTGAAACAATCGTGTGGTCTTCCCTCTCCCCAACGACCATC
AACATTGGTCGTGGCAAAGAGTTTGAAGGTGCAGTCATTGCCTTCTTCCA
CCTTCTCATCACTCGAGATGATAAGGTGAGAGCATTCCGTGAGGCACTGT
TCCGTCCTGAGCTGCCCAACATTTCCAATCTGCTAGCTACTGTTCTCGTG
TTTGCCATCGTGATTTACTTCCAAGGCTTCCGCGTGGACCTGCCCGTGAA
GTCAAGCCAAGTGCGAGGTGCGCAAGGATCATATCCGATCAAGCTGTTCT
ACACGTCAAACATCCCAATCATTCTTCAGACTGCGCTGGTTTCCAATCTT
TACTTTGTTTCGCAAGTTCTGTACACAAGGTATCCGTCAAATCTGCTAGT
GAATATTATGGGAAGATGGACAAGAATTCGAGACTCATCGCAAATGTACC
CTATTGGAGGCCTTGCATACTACATTTCACGGCCACCGCATCTAAGAGCA
GTGTTTGAGGATCCGCTTCGTGCAATTGTGTATCTGGCATTCATTCTTAC
GGCATGCGGACTGTTCAGCAAATACTGGATTGATGTATCCGGGTCATCGG
CTCGGGACGTGGCACGACAGTTGAAGGAGCAAAAGATGACTTTGAAAGGA
CATCGTGAAACGTCGCTAGTGAAAGAGCTTAATCGGTACATCCCGACGGC
GGCTGCGTTTGGAGGAATTTGTATTGGACTTCTAACTATAATGGCTGACT
TTTTGGGAGCAATTGGGTCTGGCACTGGCATTCTTATGGCTGTGACAATC
ATCTACCAATACTTTGAGATCTTTGCCAAGGAGTCAGGAAGTGATTCTGG
TTTGATGTTCTTCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2776306..2777721+

>Gvermi11975.t1 ID=Gvermi11975.t1|Name=Gvermi11975.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1416bp|location=Sequence derived from alignment at ScGOVlb_3404:2776306..2777721+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGGCGCGCCATTGTGAGACCGTTCGTGCCGTTGCTGCCAGAAATTGA
AGCACCGAACAAGCGAATTGCTTTCAAAGAGAAAGTGCTATGGACGTCCG
TAACGCTTTTTATCTACCTTGTATGCTGTCAAATTCCGTTGTATGGTGTG
AAGAATACCAAGGCATCCGATCCCCTGTACTTCGTGCGAGCTGTTTTAGC
TGCATCTAATCGAGGAACCCTGATGGAGCTTGGAATCTCTCCCATTATTA
CATCATCCATGATCATGCAGTTTCTGGCTGGGACTCGAATCATCCAGGTT
GATCAGGGATTGAAGGAAGACCGTGCTTTGTTCTCAGGTGCAGAGAAGCT
CATGGGGCTCATCATCTGTCTGGTAGAGGCAACTATGTACGTGTTCTCCG
GCATGTATGGAGACCTGTCTGTTCTTGGAACAGGTAACGCAATCCTCATT
GTCACTCAACTCTTCGTTGCTGGCATGATTGTTCTGCTTTTGGACGAGCT
TCTTCAGAAAGGATATGGTCTTGGATCTGGCATTTCTCTTTTCATTGCAA
CAAACATCTGTGAAACAATCGTGTGGTCTTCCCTCTCCCCAACGACCATC
AACATTGGTCGTGGCAAAGAGTTTGAAGGTGCAGTCATTGCCTTCTTCCA
CCTTCTCATCACTCGAGATGATAAGGTGAGAGCATTCCGTGAGGCACTGT
TCCGTCCTGAGCTGCCCAACATTTCCAATCTGCTAGCTACTGTTCTCGTG
TTTGCCATCGTGATTTACTTCCAAGGCTTCCGCGTGGACCTGCCCGTGAA
GTCAAGCCAAGTGCGAGGTGCGCAAGGATCATATCCGATCAAGCTGTTCT
ACACGTCAAACATCCCAATCATTCTTCAGACTGCGCTGGTTTCCAATCTT
TACTTTGTTTCGCAAGTTCTGTACACAAGGTATCCGTCAAATCTGCTAGT
GAATATTATGGGAAGATGGACAAGAATTCGAGACTCATCGCAAATGTACC
CTATTGGAGGCCTTGCATACTACATTTCACGGCCACCGCATCTAAGAGCA
GTGTTTGAGGATCCGCTTCGTGCAATTGTGTATCTGGCATTCATTCTTAC
GGCATGCGGACTGTTCAGCAAATACTGGATTGATGTATCCGGGTCATCGG
CTCGGGACGTGGCACGACAGTTGAAGGAGCAAAAGATGACTTTGAAAGGA
CATCGTGAAACGTCGCTAGTGAAAGAGCTTAATCGGTACATCCCGACGGC
GGCTGCGTTTGGAGGAATTTGTATTGGACTTCTAACTATAATGGCTGACT
TTTTGGGAGCAATTGGGTCTGGCACTGGCATTCTTATGGCTGTGACAATC
ATCTACCAATACTTTGAGATCTTTGCCAAGGAGTCAGGAAGTGATTCTGG
TTTGATGTTCTTCTGA
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