Gvermi11973.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11973.t1
Unique NameGvermi11973.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length188
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2772921..2773484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704346.1
Preferred nameRPL18
PFAMsRibosomal_L18
Max annot lvl2759|Eukaryota
KEGG koko:K02883,ko:K18749,ko:K21442
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005886,GO:0005911,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0022625,GO:0022626,GO:0030054,GO:0031090,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0055044,GO:0071704,GO:0071944,GO:0097159,GO:0098588,GO:0098805,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue1.4e-83
EggNOG OGsCOG1727@1|root,KOG1714@2759|Eukaryota
Descriptionribosomal protein
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03019,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11973Gvermi11973Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2772921..2773484 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11973.t1.stop1Gvermi11973.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2772921..2772923 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11973.t1.CDS1Gvermi11973.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2772921..2773484 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11973.t1.exon1Gvermi11973.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2772921..2773484 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11973.t1.start1Gvermi11973.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2773482..2773484 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11973.t1Gvermi11973.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2772921..2773484 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11973.t1 ID=Gvermi11973.t1|Name=Gvermi11973.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=188bp
MGIDLEKGGRIKKGGRRGPKSENPYLSLLVQLYRFLARRTDEKFNAVVLK
RLFMSRTSRPPLSISRIAQFMDRRTDKTAVVVGKVLDDERMLDVPKLSIC
ALDFSSTARARIEKAGGECITFDQLAVRSPTGANTVLLRGRRHAREVYKH
FFGVAKKNHVKPYVRSKGRKFERARGRRASRGFKKSV*
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spliced messenger RNA

>Gvermi11973.t1 ID=Gvermi11973.t1|Name=Gvermi11973.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=564bp|location=Sequence derived from alignment at ScGOVlb_3404:2772921..2773484- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTATCGATCTTGAAAAAGGAGGAAGAATCAAGAAAGGAGGACGAAG
GGGCCCGAAGTCCGAGAATCCCTACCTGTCCTTGCTTGTACAACTTTATC
GCTTCCTCGCACGTCGAACCGATGAGAAGTTTAATGCCGTCGTGTTGAAG
AGATTATTTATGTCGCGAACATCTCGCCCACCGCTATCCATTTCGCGTAT
TGCGCAGTTCATGGACAGGAGAACCGATAAGACCGCCGTCGTAGTGGGGA
AGGTTTTGGACGACGAAAGAATGTTGGACGTTCCGAAACTGTCCATTTGC
GCTTTGGATTTCTCAAGCACCGCGCGTGCCCGAATTGAAAAGGCTGGGGG
TGAGTGCATCACCTTTGATCAGCTGGCCGTACGATCCCCCACTGGTGCCA
ACACGGTGCTTCTCCGCGGGAGGCGCCACGCTCGTGAGGTCTACAAGCAC
TTCTTCGGTGTGGCAAAGAAAAATCATGTCAAACCGTACGTCCGTTCAAA
GGGCCGAAAGTTCGAACGCGCTCGTGGTCGTCGGGCCAGTCGTGGTTTCA
AAAAGTCCGTGTAG
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protein sequence of Gvermi11973.t1

>Gvermi11973.t1 ID=Gvermi11973.t1|Name=Gvermi11973.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=188bp
MGIDLEKGGRIKKGGRRGPKSENPYLSLLVQLYRFLARRTDEKFNAVVLK
RLFMSRTSRPPLSISRIAQFMDRRTDKTAVVVGKVLDDERMLDVPKLSIC
ALDFSSTARARIEKAGGECITFDQLAVRSPTGANTVLLRGRRHAREVYKH
FFGVAKKNHVKPYVRSKGRKFERARGRRASRGFKKSV*
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mRNA from alignment at ScGOVlb_3404:2772921..2773484-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11973.t1 ID=Gvermi11973.t1|Name=Gvermi11973.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=564bp|location=Sequence derived from alignment at ScGOVlb_3404:2772921..2773484- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTATCGATCTTGAAAAAGGAGGAAGAATCAAGAAAGGAGGACGAAG
GGGCCCGAAGTCCGAGAATCCCTACCTGTCCTTGCTTGTACAACTTTATC
GCTTCCTCGCACGTCGAACCGATGAGAAGTTTAATGCCGTCGTGTTGAAG
AGATTATTTATGTCGCGAACATCTCGCCCACCGCTATCCATTTCGCGTAT
TGCGCAGTTCATGGACAGGAGAACCGATAAGACCGCCGTCGTAGTGGGGA
AGGTTTTGGACGACGAAAGAATGTTGGACGTTCCGAAACTGTCCATTTGC
GCTTTGGATTTCTCAAGCACCGCGCGTGCCCGAATTGAAAAGGCTGGGGG
TGAGTGCATCACCTTTGATCAGCTGGCCGTACGATCCCCCACTGGTGCCA
ACACGGTGCTTCTCCGCGGGAGGCGCCACGCTCGTGAGGTCTACAAGCAC
TTCTTCGGTGTGGCAAAGAAAAATCATGTCAAACCGTACGTCCGTTCAAA
GGGCCGAAAGTTCGAACGCGCTCGTGGTCGTCGGGCCAGTCGTGGTTTCA
AAAAGTCCGTGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2772921..2773484-

>Gvermi11973.t1 ID=Gvermi11973.t1|Name=Gvermi11973.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=564bp|location=Sequence derived from alignment at ScGOVlb_3404:2772921..2773484- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTATCGATCTTGAAAAAGGAGGAAGAATCAAGAAAGGAGGACGAAG
GGGCCCGAAGTCCGAGAATCCCTACCTGTCCTTGCTTGTACAACTTTATC
GCTTCCTCGCACGTCGAACCGATGAGAAGTTTAATGCCGTCGTGTTGAAG
AGATTATTTATGTCGCGAACATCTCGCCCACCGCTATCCATTTCGCGTAT
TGCGCAGTTCATGGACAGGAGAACCGATAAGACCGCCGTCGTAGTGGGGA
AGGTTTTGGACGACGAAAGAATGTTGGACGTTCCGAAACTGTCCATTTGC
GCTTTGGATTTCTCAAGCACCGCGCGTGCCCGAATTGAAAAGGCTGGGGG
TGAGTGCATCACCTTTGATCAGCTGGCCGTACGATCCCCCACTGGTGCCA
ACACGGTGCTTCTCCGCGGGAGGCGCCACGCTCGTGAGGTCTACAAGCAC
TTCTTCGGTGTGGCAAAGAAAAATCATGTCAAACCGTACGTCCGTTCAAA
GGGCCGAAAGTTCGAACGCGCTCGTGGTCGTCGGGCCAGTCGTGGTTTCA
AAAAGTCCGTGTAG
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