Gvermi11970.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11970.t1
Unique NameGvermi11970.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length386
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2763236..2764494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11970Gvermi11970Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2763236..2764494 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11970.t1Gvermi11970.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2763236..2764494 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11970.t1.stop1Gvermi11970.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2763236..2763238 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11970.t1.CDS1Gvermi11970.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2763236..2763433 -
Gvermi11970.t1.CDS2Gvermi11970.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2763535..2764494 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11970.t1.exon1Gvermi11970.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2763236..2763433 -
Gvermi11970.t1.exon2Gvermi11970.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2763535..2764494 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11970.t1.intron1Gvermi11970.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 2763434..2763534 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11970.t1.start1Gvermi11970.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2764492..2764494 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11970.t1 ID=Gvermi11970.t1|Name=Gvermi11970.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=386bp
MRALGFASLLLGLSIAISRDRATAQQDFGQVLLQAFTTGTLPGAGGSMPS
STPLQSLEGNKPESFPSVTLEPMPQASLEELSELEGTPDSESNDLLDAAS
ESLGSSPSSSPTPVDASTIDENTDPGNGEEIVFQIQSLSTPLPSLAPSLT
PSPSTSPLPSLPAGKEETESSSTEISSPSITPASQPTTSEHGDPPMVNAT
PDPEIGDSLIQSLETPRNSTGSMSGIFTAIKVNCGGMKERSTINEDKTKW
YNVDSQIAEDPYAAAHFVSDIDAILYSSYRYATTQLTYKVDLPEPGRWQV
VLQWAEISQFYMKEGARVFSVLLNSIETENEIDVYRDSPQGKFSPLIRTY
EVDAPDPTLLIEIHKIVGQPMLSAFQVAFIGPSSP*
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spliced messenger RNA

>Gvermi11970.t1 ID=Gvermi11970.t1|Name=Gvermi11970.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1158bp|location=Sequence derived from alignment at ScGOVlb_3404:2763236..2764494- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAGCCCTGGGATTCGCATCATTGTTGCTCGGTTTGAGCATTGCCAT
ATCAAGAGATAGGGCAACAGCTCAACAAGACTTTGGTCAGGTGCTCTTAC
AAGCGTTTACAACTGGTACTCTCCCAGGGGCGGGGGGATCTATGCCGTCG
TCTACCCCACTTCAATCTCTCGAAGGGAATAAGCCCGAAAGTTTTCCATC
TGTCACTCTGGAACCCATGCCGCAGGCCTCACTTGAAGAGTTATCAGAGT
TGGAGGGCACGCCCGACTCGGAATCAAACGACCTTTTGGACGCAGCTTCC
GAATCACTGGGCTCATCACCGAGCTCATCACCGACTCCAGTCGATGCATC
TACCATCGATGAAAACACGGATCCTGGAAATGGAGAGGAAATTGTATTTC
AAATACAATCGTTATCTACCCCGCTTCCAAGTTTGGCACCCTCTCTGACA
CCATCACCCTCAACATCACCACTGCCTTCCTTGCCGGCCGGAAAAGAAGA
AACGGAATCCTCTTCGACAGAAATATCTTCCCCTTCAATCACACCCGCTT
CACAACCGACAACATCAGAACATGGGGATCCACCAATGGTCAATGCGACT
CCTGATCCGGAGATCGGGGATTCTTTGATTCAATCGCTTGAGACACCAAG
GAATTCGACTGGATCTATGTCCGGCATATTCACTGCAATTAAGGTGAATT
GCGGTGGTATGAAAGAGAGAAGCACTATCAACGAGGATAAAACCAAGTGG
TACAACGTGGACTCTCAAATCGCGGAGGATCCTTATGCTGCTGCCCATTT
TGTGAGCGACATTGACGCGATACTGTACTCTTCATATCGTTATGCAACAA
CACAATTAACTTACAAAGTGGACCTTCCAGAGCCGGGCAGGTGGCAAGTC
GTTTTGCAGTGGGCAGAAATTTCGCAGTTTTACATGAAGGAGGGAGCGCG
TGTCTTTTCGGTGCTTTTGAATTCTATTGAAACGGAGAATGAAATAGATG
TATATCGCGACTCACCGCAAGGGAAATTTTCGCCATTGATTCGGACGTAC
GAAGTAGATGCCCCAGATCCCACATTGCTGATTGAGATCCACAAAATAGT
TGGTCAACCAATGTTGAGTGCTTTTCAGGTGGCGTTCATTGGACCGTCAT
CACCGTAG
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protein sequence of Gvermi11970.t1

>Gvermi11970.t1 ID=Gvermi11970.t1|Name=Gvermi11970.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=386bp
MRALGFASLLLGLSIAISRDRATAQQDFGQVLLQAFTTGTLPGAGGSMPS
STPLQSLEGNKPESFPSVTLEPMPQASLEELSELEGTPDSESNDLLDAAS
ESLGSSPSSSPTPVDASTIDENTDPGNGEEIVFQIQSLSTPLPSLAPSLT
PSPSTSPLPSLPAGKEETESSSTEISSPSITPASQPTTSEHGDPPMVNAT
PDPEIGDSLIQSLETPRNSTGSMSGIFTAIKVNCGGMKERSTINEDKTKW
YNVDSQIAEDPYAAAHFVSDIDAILYSSYRYATTQLTYKVDLPEPGRWQV
VLQWAEISQFYMKEGARVFSVLLNSIETENEIDVYRDSPQGKFSPLIRTY
EVDAPDPTLLIEIHKIVGQPMLSAFQVAFIGPSSP*
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mRNA from alignment at ScGOVlb_3404:2763236..2764494-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11970.t1 ID=Gvermi11970.t1|Name=Gvermi11970.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1259bp|location=Sequence derived from alignment at ScGOVlb_3404:2763236..2764494- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGAGCCCTGGGATTCGCATCATTGTTGCTCGGTTTGAGCATTGCCAT
ATCAAGAGATAGGGCAACAGCTCAACAAGACTTTGGTCAGGTGCTCTTAC
AAGCGTTTACAACTGGTACTCTCCCAGGGGCGGGGGGATCTATGCCGTCG
TCTACCCCACTTCAATCTCTCGAAGGGAATAAGCCCGAAAGTTTTCCATC
TGTCACTCTGGAACCCATGCCGCAGGCCTCACTTGAAGAGTTATCAGAGT
TGGAGGGCACGCCCGACTCGGAATCAAACGACCTTTTGGACGCAGCTTCC
GAATCACTGGGCTCATCACCGAGCTCATCACCGACTCCAGTCGATGCATC
TACCATCGATGAAAACACGGATCCTGGAAATGGAGAGGAAATTGTATTTC
AAATACAATCGTTATCTACCCCGCTTCCAAGTTTGGCACCCTCTCTGACA
CCATCACCCTCAACATCACCACTGCCTTCCTTGCCGGCCGGAAAAGAAGA
AACGGAATCCTCTTCGACAGAAATATCTTCCCCTTCAATCACACCCGCTT
CACAACCGACAACATCAGAACATGGGGATCCACCAATGGTCAATGCGACT
CCTGATCCGGAGATCGGGGATTCTTTGATTCAATCGCTTGAGACACCAAG
GAATTCGACTGGATCTATGTCCGGCATATTCACTGCAATTAAGGTGAATT
GCGGTGGTATGAAAGAGAGAAGCACTATCAACGAGGATAAAACCAAGTGG
TACAACGTGGACTCTCAAATCGCGGAGGATCCTTATGCTGCTGCCCATTT
TGTGAGCGACATTGACGCGATACTGTACTCTTCATATCGTTATGCAACAA
CACAATTAACTTACAAAGTGGACCTTCCAGAGCCGGGCAGGTGGCAAGTC
GTTTTGCAGTGGGCAGAAATTTCGCAGTTTTACATGAAGGAGGGAGCGCG
TGTCTTTTCGGTATGTTTGCATCATAGCGTAGTCTCTTTGGCGAAACAAC
TTTGTGCTCAACACATCACAGCTAACTTTGTATTATGCTTTGCGACATGA
AATCGTAACAGGTGCTTTTGAATTCTATTGAAACGGAGAATGAAATAGAT
GTATATCGCGACTCACCGCAAGGGAAATTTTCGCCATTGATTCGGACGTA
CGAAGTAGATGCCCCAGATCCCACATTGCTGATTGAGATCCACAAAATAG
TTGGTCAACCAATGTTGAGTGCTTTTCAGGTGGCGTTCATTGGACCGTCA
TCACCGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2763236..2764494-

>Gvermi11970.t1 ID=Gvermi11970.t1|Name=Gvermi11970.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1158bp|location=Sequence derived from alignment at ScGOVlb_3404:2763236..2764494- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGAGCCCTGGGATTCGCATCATTGTTGCTCGGTTTGAGCATTGCCAT
ATCAAGAGATAGGGCAACAGCTCAACAAGACTTTGGTCAGGTGCTCTTAC
AAGCGTTTACAACTGGTACTCTCCCAGGGGCGGGGGGATCTATGCCGTCG
TCTACCCCACTTCAATCTCTCGAAGGGAATAAGCCCGAAAGTTTTCCATC
TGTCACTCTGGAACCCATGCCGCAGGCCTCACTTGAAGAGTTATCAGAGT
TGGAGGGCACGCCCGACTCGGAATCAAACGACCTTTTGGACGCAGCTTCC
GAATCACTGGGCTCATCACCGAGCTCATCACCGACTCCAGTCGATGCATC
TACCATCGATGAAAACACGGATCCTGGAAATGGAGAGGAAATTGTATTTC
AAATACAATCGTTATCTACCCCGCTTCCAAGTTTGGCACCCTCTCTGACA
CCATCACCCTCAACATCACCACTGCCTTCCTTGCCGGCCGGAAAAGAAGA
AACGGAATCCTCTTCGACAGAAATATCTTCCCCTTCAATCACACCCGCTT
CACAACCGACAACATCAGAACATGGGGATCCACCAATGGTCAATGCGACT
CCTGATCCGGAGATCGGGGATTCTTTGATTCAATCGCTTGAGACACCAAG
GAATTCGACTGGATCTATGTCCGGCATATTCACTGCAATTAAGGTGAATT
GCGGTGGTATGAAAGAGAGAAGCACTATCAACGAGGATAAAACCAAGTGG
TACAACGTGGACTCTCAAATCGCGGAGGATCCTTATGCTGCTGCCCATTT
TGTGAGCGACATTGACGCGATACTGTACTCTTCATATCGTTATGCAACAA
CACAATTAACTTACAAAGTGGACCTTCCAGAGCCGGGCAGGTGGCAAGTC
GTTTTGCAGTGGGCAGAAATTTCGCAGTTTTACATGAAGGAGGGAGCGCG
TGTCTTTTCGGTGCTTTTGAATTCTATTGAAACGGAGAATGAAATAGATG
TATATCGCGACTCACCGCAAGGGAAATTTTCGCCATTGATTCGGACGTAC
GAAGTAGATGCCCCAGATCCCACATTGCTGATTGAGATCCACAAAATAGT
TGGTCAACCAATGTTGAGTGCTTTTCAGGTGGCGTTCATTGGACCGTCAT
CACCGTAG
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