Gvermi11968.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi11968.t1
Unique Name	Gvermi11968.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	499

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:2758275..2759771 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703305.1
Preferred name	MAS1
PFAMs	Peptidase_M16,Peptidase_M16_C
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K17732
GOs	GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005743,GO:0005746,GO:0005750,GO:0005758,GO:0005759,GO:0005773,GO:0005774,GO:0006091,GO:0006119,GO:0006122,GO:0006139,GO:0006163,GO:0006508,GO:0006605,GO:0006626,GO:0006627,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0008270,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016485,GO:0016787,GO:0017087,GO:0017144,GO:0019538,GO:0019637,GO:0019693,GO:0019866,GO:0019867,GO:0022900,GO:0022904,GO:0030312,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031970,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034982,GO:0042773,GO:0042775,GO:0042886,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044437,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045184,GO:0045275,GO:0045333,GO:0046034,GO:0046483,GO:0046872,GO:0046907,GO:0046914,GO:0051179,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0055086,GO:0055114,GO:0070011,GO:0070013,GO:0070069,GO:0070469,GO:0070585,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072521,GO:0072594,GO:0072655,GO:0098588,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:0098805,GO:0140096,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
Evalue	6.54e-201
EggNOG OGs	COG0612@1\|root,KOG0960@2759\|Eukaryota
EC	3.4.24.64
Description	mitochondrial electron transport, ubiquinol to cytochrome c
COG category	P
BRITE	ko00000,ko01000,ko01002,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi11968	Gvermi11968	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 2758275..2759771 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11968.t1.start1	Gvermi11968.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 2758275..2758277 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11968.t1.CDS1	Gvermi11968.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 2758275..2759771 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11968.t1.exon1	Gvermi11968.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 2758275..2759771 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11968.t1.stop1	Gvermi11968.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 2759769..2759771 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11968.t1	Gvermi11968.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 2758275..2759771 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:2758275..2759771+
coding sequence from alignment at ScGOVlb_3404:2758275..2759771+

mRNA sequence

>Gvermi11968.t1 ID=Gvermi11968.t1|Name=Gvermi11968.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=499bp
MSPLARLGVLRRSLSTAPIIAPVLTTPPASGIKGALKRMLGPNAEPLPPH
YRLDESLLPEVPTRVTTLPNGLRVASESRPVGAAVVGVWIDAGTRFEPES
VNGAAHFLEHLIFKGTKNRAQRTLEVGVEDIGAHLNAYTSREQTVYYARS
LKDNVPDMTALLADILQNSEISDAAVDRERDVILREMEEIDQIHEEVLFD
YLHGTAYQDSPLARTILGPVENIKSLKSADLKAYIAEHYKPHRMVLAAAG
DVEHDHLVELADKHFGSMQPDANPRSSFDLVNEKPAYLVGSDVRIRNDDM
PVAHFAIAFESCGWAHPDAVSFMVLQSLLGTYDRASTTGSCSSYRLSSTL
STVPNARTATTFNTTYTDTGLFGIYATGEPPELDDVVVPIMQELVRNCFK
VDETQLANAKLALKTSLLSQLDGPTGIAEEIGRQLLVYGRRIPISEWFAR
IDAVDAEAIKRISNKYIFDREVAITAMGPIHSLPDYNYIRSSTYANLY*

spliced messenger RNA

>Gvermi11968.t1 ID=Gvermi11968.t1|Name=Gvermi11968.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1497bp|location=Sequence derived from alignment at ScGOVlb_3404:2758275..2759771+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCGCTCGCGCGCCTTGGCGTGCTACGTCGCTCCCTCTCCACTGC
TCCCATTATCGCCCCCGTGCTTACCACCCCCCCCGCTTCCGGCATCAAGG
GCGCTCTCAAGCGCATGCTTGGTCCTAATGCCGAACCGCTCCCCCCGCAC
TACCGTCTGGACGAGTCGCTTTTGCCCGAAGTCCCGACCCGCGTCACTAC
CCTTCCGAATGGGTTGCGCGTTGCATCGGAGTCGCGCCCGGTGGGCGCCG
CCGTCGTAGGCGTGTGGATCGACGCCGGCACCCGCTTTGAACCTGAGAGT
GTCAACGGTGCTGCGCACTTCCTCGAGCATCTCATTTTCAAGGGCACTAA
GAATCGTGCTCAGCGCACCCTTGAGGTTGGCGTGGAGGATATTGGCGCCC
ATCTCAACGCGTACACTAGTCGCGAGCAGACCGTTTATTATGCTCGTTCG
CTGAAGGACAATGTGCCCGACATGACCGCGTTGCTTGCCGACATCCTACA
GAACTCGGAAATTTCTGATGCCGCTGTCGATAGAGAACGCGATGTCATAC
TTCGCGAAATGGAGGAGATCGACCAGATCCATGAGGAGGTTTTGTTTGAC
TACCTGCATGGAACGGCCTACCAGGATTCCCCTCTCGCGCGCACCATTCT
TGGCCCTGTCGAGAACATCAAGTCGCTCAAATCGGCCGATTTGAAGGCTT
ACATTGCGGAACACTACAAGCCTCATCGAATGGTGCTCGCTGCCGCAGGA
GACGTCGAGCACGATCATCTTGTGGAGCTTGCCGACAAGCATTTCGGATC
CATGCAACCGGACGCAAATCCGCGCTCTTCGTTTGATCTTGTCAATGAAA
AGCCAGCGTATTTGGTCGGTTCCGACGTGCGTATCCGAAATGATGACATG
CCCGTCGCGCATTTTGCCATTGCCTTCGAAAGCTGTGGCTGGGCTCACCC
AGATGCGGTGTCTTTCATGGTACTGCAATCGCTGCTTGGAACTTATGATC
GCGCTTCCACAACTGGTTCATGCAGTTCCTACCGGCTCTCTTCCACGCTG
TCTACCGTACCCAACGCACGTACGGCCACTACCTTTAATACTACTTACAC
AGACACAGGCTTGTTTGGTATTTACGCAACAGGTGAACCCCCAGAGCTTG
ATGATGTTGTTGTGCCGATAATGCAGGAATTAGTCAGAAACTGCTTCAAG
GTGGACGAAACACAGCTAGCAAATGCGAAATTGGCTTTGAAGACCAGCTT
GCTTTCTCAGCTGGATGGCCCCACTGGTATTGCAGAGGAAATAGGTCGTC
AATTGCTTGTATACGGCAGGCGTATTCCTATTTCCGAATGGTTTGCTCGT
ATCGATGCCGTTGATGCCGAAGCTATTAAGCGCATCTCGAACAAATACAT
ATTTGACCGTGAAGTTGCGATCACTGCTATGGGTCCTATCCATTCTCTAC
CAGACTACAACTATATTCGTAGCTCCACATACGCCAACCTGTACTAA

protein sequence of Gvermi11968.t1

>Gvermi11968.t1 ID=Gvermi11968.t1|Name=Gvermi11968.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=499bp
MSPLARLGVLRRSLSTAPIIAPVLTTPPASGIKGALKRMLGPNAEPLPPH
YRLDESLLPEVPTRVTTLPNGLRVASESRPVGAAVVGVWIDAGTRFEPES
VNGAAHFLEHLIFKGTKNRAQRTLEVGVEDIGAHLNAYTSREQTVYYARS
LKDNVPDMTALLADILQNSEISDAAVDRERDVILREMEEIDQIHEEVLFD
YLHGTAYQDSPLARTILGPVENIKSLKSADLKAYIAEHYKPHRMVLAAAG
DVEHDHLVELADKHFGSMQPDANPRSSFDLVNEKPAYLVGSDVRIRNDDM
PVAHFAIAFESCGWAHPDAVSFMVLQSLLGTYDRASTTGSCSSYRLSSTL
STVPNARTATTFNTTYTDTGLFGIYATGEPPELDDVVVPIMQELVRNCFK
VDETQLANAKLALKTSLLSQLDGPTGIAEEIGRQLLVYGRRIPISEWFAR
IDAVDAEAIKRISNKYIFDREVAITAMGPIHSLPDYNYIRSSTYANLY*

mRNA from alignment at ScGOVlb_3404:2758275..2759771+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi11968.t1 ID=Gvermi11968.t1|Name=Gvermi11968.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1497bp|location=Sequence derived from alignment at ScGOVlb_3404:2758275..2759771+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGCCGCTCGCGCGCCTTGGCGTGCTACGTCGCTCCCTCTCCACTGC
TCCCATTATCGCCCCCGTGCTTACCACCCCCCCCGCTTCCGGCATCAAGG
GCGCTCTCAAGCGCATGCTTGGTCCTAATGCCGAACCGCTCCCCCCGCAC
TACCGTCTGGACGAGTCGCTTTTGCCCGAAGTCCCGACCCGCGTCACTAC
CCTTCCGAATGGGTTGCGCGTTGCATCGGAGTCGCGCCCGGTGGGCGCCG
CCGTCGTAGGCGTGTGGATCGACGCCGGCACCCGCTTTGAACCTGAGAGT
GTCAACGGTGCTGCGCACTTCCTCGAGCATCTCATTTTCAAGGGCACTAA
GAATCGTGCTCAGCGCACCCTTGAGGTTGGCGTGGAGGATATTGGCGCCC
ATCTCAACGCGTACACTAGTCGCGAGCAGACCGTTTATTATGCTCGTTCG
CTGAAGGACAATGTGCCCGACATGACCGCGTTGCTTGCCGACATCCTACA
GAACTCGGAAATTTCTGATGCCGCTGTCGATAGAGAACGCGATGTCATAC
TTCGCGAAATGGAGGAGATCGACCAGATCCATGAGGAGGTTTTGTTTGAC
TACCTGCATGGAACGGCCTACCAGGATTCCCCTCTCGCGCGCACCATTCT
TGGCCCTGTCGAGAACATCAAGTCGCTCAAATCGGCCGATTTGAAGGCTT
ACATTGCGGAACACTACAAGCCTCATCGAATGGTGCTCGCTGCCGCAGGA
GACGTCGAGCACGATCATCTTGTGGAGCTTGCCGACAAGCATTTCGGATC
CATGCAACCGGACGCAAATCCGCGCTCTTCGTTTGATCTTGTCAATGAAA
AGCCAGCGTATTTGGTCGGTTCCGACGTGCGTATCCGAAATGATGACATG
CCCGTCGCGCATTTTGCCATTGCCTTCGAAAGCTGTGGCTGGGCTCACCC
AGATGCGGTGTCTTTCATGGTACTGCAATCGCTGCTTGGAACTTATGATC
GCGCTTCCACAACTGGTTCATGCAGTTCCTACCGGCTCTCTTCCACGCTG
TCTACCGTACCCAACGCACGTACGGCCACTACCTTTAATACTACTTACAC
AGACACAGGCTTGTTTGGTATTTACGCAACAGGTGAACCCCCAGAGCTTG
ATGATGTTGTTGTGCCGATAATGCAGGAATTAGTCAGAAACTGCTTCAAG
GTGGACGAAACACAGCTAGCAAATGCGAAATTGGCTTTGAAGACCAGCTT
GCTTTCTCAGCTGGATGGCCCCACTGGTATTGCAGAGGAAATAGGTCGTC
AATTGCTTGTATACGGCAGGCGTATTCCTATTTCCGAATGGTTTGCTCGT
ATCGATGCCGTTGATGCCGAAGCTATTAAGCGCATCTCGAACAAATACAT
ATTTGACCGTGAAGTTGCGATCACTGCTATGGGTCCTATCCATTCTCTAC
CAGACTACAACTATATTCGTAGCTCCACATACGCCAACCTGTACTAA

Coding sequence (CDS) from alignment at ScGOVlb_3404:2758275..2759771+

>Gvermi11968.t1 ID=Gvermi11968.t1|Name=Gvermi11968.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1497bp|location=Sequence derived from alignment at ScGOVlb_3404:2758275..2759771+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGCCGCTCGCGCGCCTTGGCGTGCTACGTCGCTCCCTCTCCACTGC
TCCCATTATCGCCCCCGTGCTTACCACCCCCCCCGCTTCCGGCATCAAGG
GCGCTCTCAAGCGCATGCTTGGTCCTAATGCCGAACCGCTCCCCCCGCAC
TACCGTCTGGACGAGTCGCTTTTGCCCGAAGTCCCGACCCGCGTCACTAC
CCTTCCGAATGGGTTGCGCGTTGCATCGGAGTCGCGCCCGGTGGGCGCCG
CCGTCGTAGGCGTGTGGATCGACGCCGGCACCCGCTTTGAACCTGAGAGT
GTCAACGGTGCTGCGCACTTCCTCGAGCATCTCATTTTCAAGGGCACTAA
GAATCGTGCTCAGCGCACCCTTGAGGTTGGCGTGGAGGATATTGGCGCCC
ATCTCAACGCGTACACTAGTCGCGAGCAGACCGTTTATTATGCTCGTTCG
CTGAAGGACAATGTGCCCGACATGACCGCGTTGCTTGCCGACATCCTACA
GAACTCGGAAATTTCTGATGCCGCTGTCGATAGAGAACGCGATGTCATAC
TTCGCGAAATGGAGGAGATCGACCAGATCCATGAGGAGGTTTTGTTTGAC
TACCTGCATGGAACGGCCTACCAGGATTCCCCTCTCGCGCGCACCATTCT
TGGCCCTGTCGAGAACATCAAGTCGCTCAAATCGGCCGATTTGAAGGCTT
ACATTGCGGAACACTACAAGCCTCATCGAATGGTGCTCGCTGCCGCAGGA
GACGTCGAGCACGATCATCTTGTGGAGCTTGCCGACAAGCATTTCGGATC
CATGCAACCGGACGCAAATCCGCGCTCTTCGTTTGATCTTGTCAATGAAA
AGCCAGCGTATTTGGTCGGTTCCGACGTGCGTATCCGAAATGATGACATG
CCCGTCGCGCATTTTGCCATTGCCTTCGAAAGCTGTGGCTGGGCTCACCC
AGATGCGGTGTCTTTCATGGTACTGCAATCGCTGCTTGGAACTTATGATC
GCGCTTCCACAACTGGTTCATGCAGTTCCTACCGGCTCTCTTCCACGCTG
TCTACCGTACCCAACGCACGTACGGCCACTACCTTTAATACTACTTACAC
AGACACAGGCTTGTTTGGTATTTACGCAACAGGTGAACCCCCAGAGCTTG
ATGATGTTGTTGTGCCGATAATGCAGGAATTAGTCAGAAACTGCTTCAAG
GTGGACGAAACACAGCTAGCAAATGCGAAATTGGCTTTGAAGACCAGCTT
GCTTTCTCAGCTGGATGGCCCCACTGGTATTGCAGAGGAAATAGGTCGTC
AATTGCTTGTATACGGCAGGCGTATTCCTATTTCCGAATGGTTTGCTCGT
ATCGATGCCGTTGATGCCGAAGCTATTAAGCGCATCTCGAACAAATACAT
ATTTGACCGTGAAGTTGCGATCACTGCTATGGGTCCTATCCATTCTCTAC
CAGACTACAACTATATTCGTAGCTCCACATACGCCAACCTGTACTAA