Gvermi11966.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi11966.t1
Unique Name	Gvermi11966.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	739

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:2752474..2754690 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4113.PGSC0003DMT400067640
PFAMs	COG2,DUF3510
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K20289
GOs	GO:0003674,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005829,GO:0006810,GO:0006891,GO:0006996,GO:0007030,GO:0008104,GO:0008150,GO:0008565,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016192,GO:0017119,GO:0031984,GO:0032991,GO:0033036,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045184,GO:0048193,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071840,GO:0098791,GO:0099023
Evalue	3.91e-65
EggNOG OGs	KOG2307@1\|root,KOG2307@2759\|Eukaryota,37NR0@33090\|Viridiplantae,3GEB1@35493\|Streptophyta,44CWJ@71274\|asterids
Description	Conserved oligomeric Golgi complex
COG category	U
BRITE	ko00000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi11966	Gvermi11966	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 2752474..2754690 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11966.t1.start1	Gvermi11966.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 2752474..2752476 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11966.t1.CDS1	Gvermi11966.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 2752474..2754690 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11966.t1.exon1	Gvermi11966.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 2752474..2754690 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11966.t1.stop1	Gvermi11966.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 2754688..2754690 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11966.t1	Gvermi11966.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 2752474..2754690 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:2752474..2754690+
coding sequence from alignment at ScGOVlb_3404:2752474..2754690+

mRNA sequence

>Gvermi11966.t1 ID=Gvermi11966.t1|Name=Gvermi11966.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=739bp
MRKTLSNSKTLSFDPTVLSSPDFDPQNFVSELRSQVPLRILRDDLRTHAV
SLQSQIVTNLQTDFHTFSTLGETINDAKTLCQATNPALEKLQGILKDLIS
DLDDHINTLENTLTYRRRVNGKISALQTLVYANDLLHKCERLLNEYRMLT
DRTTPEALRVMERIATETAQLNFTLNRAVKGAFLKSLTLRIGTVRRKVNS
CLDAWLRRSLQSVEDSEVDLPRVLCMYVSAGIASQAEEFFRREVVQPFTS
TRLRMTPMLKRAESSVNPKTVTAAHALAAAHEEIVQFLGLKVLPIVTLCE
SEERLREKLDFVGNAVWPQIQNAIAMNMTAAFSPGIPNVFHKSFMAGTQI
YNAVEASVTNEEFRNRLKSSRATVDFWKHWNLPVYFQLRFQEITTRFDHH
LNMGPVSSIASPLEVGDWGSLSSKPIRIDIYQATPSASLAACLERCWSED
VFHTTLTHRFLRLSLQLLARYCTWVRTGLAGEWSNPDALPKGAARIYKDV
SVFLECMPSELSSIIRSRGASLSDELLSNIASALDNAVSKFSSLLPELST
SISNSLGRSCVENLQPLRGILATYRMSSKQIPTAHSTFVPKILRPLKSFI
KENEDTFPDDERIALATAVVEQTAEEYRKMATDLLQRNKSSEATLRRLNI
GRSGALSGTNSSATSVIEKISTQLCLDVQKFAEEAVALGVIIEDSASIVL
LKESVQNERATSLEPTDMRGQIDPATSVQSMPEINRSS*

spliced messenger RNA

>Gvermi11966.t1 ID=Gvermi11966.t1|Name=Gvermi11966.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2217bp|location=Sequence derived from alignment at ScGOVlb_3404:2752474..2754690+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAAAAACTCTGTCGAACTCCAAAACGCTTTCATTCGATCCGACGGT
CTTGTCGTCACCAGACTTTGATCCCCAAAACTTCGTCTCAGAGCTTCGTT
CACAAGTTCCATTGCGCATTCTTCGGGATGATCTCAGAACCCACGCCGTT
TCTTTACAATCTCAAATCGTAACAAATTTGCAAACAGACTTTCATACCTT
TAGCACACTTGGTGAAACTATTAATGATGCCAAAACACTTTGTCAGGCAA
CAAACCCAGCTTTAGAAAAGCTCCAGGGCATCTTAAAGGATCTCATTAGT
GACCTGGATGATCACATAAATACTCTAGAAAATACCCTAACTTATCGAAG
ACGTGTGAATGGGAAGATATCTGCTCTTCAAACGCTTGTTTACGCAAATG
ATTTACTACACAAGTGTGAAAGACTTTTGAATGAGTATCGTATGTTAACG
GATCGTACTACACCAGAGGCCTTACGCGTAATGGAAAGAATCGCAACAGA
AACAGCACAACTGAACTTTACCCTGAATCGGGCTGTGAAAGGTGCTTTTT
TGAAAAGTCTCACCCTTCGAATCGGCACTGTGCGCAGAAAAGTGAATAGT
TGTCTAGATGCCTGGCTTCGCCGATCTCTTCAGTCCGTGGAAGATTCTGA
AGTAGATTTACCCAGAGTTCTGTGTATGTATGTGTCAGCGGGAATTGCGA
GCCAAGCAGAAGAATTCTTCCGGCGAGAAGTGGTGCAGCCTTTCACATCT
ACTCGGCTGCGAATGACACCTATGTTAAAAAGAGCGGAATCCAGTGTGAA
TCCAAAGACAGTGACAGCCGCTCACGCGCTTGCAGCTGCTCACGAAGAAA
TCGTACAATTCCTTGGGTTGAAGGTCTTACCGATTGTCACATTGTGTGAA
TCCGAAGAACGACTGAGAGAAAAACTTGATTTTGTCGGTAATGCGGTATG
GCCGCAGATACAAAATGCAATAGCAATGAACATGACAGCTGCGTTCTCGC
CTGGAATCCCGAATGTTTTCCACAAGAGCTTTATGGCTGGAACCCAGATT
TACAATGCAGTTGAAGCATCGGTGACCAATGAAGAGTTTCGGAACCGATT
AAAGTCTTCAAGAGCCACTGTCGATTTTTGGAAGCATTGGAACCTTCCAG
TATACTTTCAACTTAGATTTCAAGAGATCACAACCCGTTTTGACCATCAC
CTTAATATGGGCCCTGTGTCGTCAATAGCATCACCTCTTGAAGTTGGGGA
CTGGGGTAGCTTGAGTTCCAAACCGATTCGCATTGATATCTATCAAGCTA
CACCAAGTGCCAGTCTAGCTGCCTGTCTGGAAAGGTGTTGGTCTGAAGAC
GTGTTTCACACCACTTTGACTCATCGATTCTTGCGCCTTTCTCTGCAACT
ATTAGCACGGTACTGCACATGGGTAAGAACAGGTCTAGCTGGGGAATGGT
CCAATCCAGATGCTCTACCAAAAGGTGCAGCCAGAATTTATAAGGATGTG
TCTGTATTTTTGGAATGTATGCCGTCCGAACTTTCTTCTATTATTCGATC
CAGGGGAGCGTCGCTTTCAGATGAGCTTCTTAGCAATATTGCATCGGCTC
TTGATAATGCCGTGAGTAAGTTTTCCTCATTACTACCGGAGCTCTCAACA
TCCATTTCCAACTCCCTTGGACGAAGCTGTGTGGAAAATCTGCAGCCATT
GCGAGGCATTCTGGCTACCTATCGCATGTCCTCTAAACAAATACCCACTG
CACATTCGACATTTGTGCCGAAGATTTTAAGGCCTTTGAAATCGTTCATC
AAGGAAAATGAAGATACATTTCCAGATGACGAACGGATTGCGTTAGCAAC
TGCTGTCGTCGAACAAACAGCTGAGGAATATCGAAAAATGGCTACGGACT
TATTGCAGAGGAATAAGAGTAGCGAAGCAACCTTACGAAGACTCAATATT
GGACGAAGTGGAGCGCTCTCTGGAACTAATTCAAGTGCAACCAGTGTAAT
CGAGAAGATTTCCACACAGCTCTGTTTGGACGTGCAAAAGTTTGCTGAAG
AAGCAGTGGCTCTTGGAGTGATAATTGAAGACTCAGCGTCCATTGTATTA
CTCAAAGAAAGTGTGCAAAACGAAAGAGCAACATCTTTGGAACCAACCGA
CATGAGAGGTCAAATAGATCCTGCGACATCAGTGCAGTCCATGCCAGAGA
TCAACCGGTCTTCATAA

protein sequence of Gvermi11966.t1

>Gvermi11966.t1 ID=Gvermi11966.t1|Name=Gvermi11966.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=739bp
MRKTLSNSKTLSFDPTVLSSPDFDPQNFVSELRSQVPLRILRDDLRTHAV
SLQSQIVTNLQTDFHTFSTLGETINDAKTLCQATNPALEKLQGILKDLIS
DLDDHINTLENTLTYRRRVNGKISALQTLVYANDLLHKCERLLNEYRMLT
DRTTPEALRVMERIATETAQLNFTLNRAVKGAFLKSLTLRIGTVRRKVNS
CLDAWLRRSLQSVEDSEVDLPRVLCMYVSAGIASQAEEFFRREVVQPFTS
TRLRMTPMLKRAESSVNPKTVTAAHALAAAHEEIVQFLGLKVLPIVTLCE
SEERLREKLDFVGNAVWPQIQNAIAMNMTAAFSPGIPNVFHKSFMAGTQI
YNAVEASVTNEEFRNRLKSSRATVDFWKHWNLPVYFQLRFQEITTRFDHH
LNMGPVSSIASPLEVGDWGSLSSKPIRIDIYQATPSASLAACLERCWSED
VFHTTLTHRFLRLSLQLLARYCTWVRTGLAGEWSNPDALPKGAARIYKDV
SVFLECMPSELSSIIRSRGASLSDELLSNIASALDNAVSKFSSLLPELST
SISNSLGRSCVENLQPLRGILATYRMSSKQIPTAHSTFVPKILRPLKSFI
KENEDTFPDDERIALATAVVEQTAEEYRKMATDLLQRNKSSEATLRRLNI
GRSGALSGTNSSATSVIEKISTQLCLDVQKFAEEAVALGVIIEDSASIVL
LKESVQNERATSLEPTDMRGQIDPATSVQSMPEINRSS*

mRNA from alignment at ScGOVlb_3404:2752474..2754690+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi11966.t1 ID=Gvermi11966.t1|Name=Gvermi11966.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2217bp|location=Sequence derived from alignment at ScGOVlb_3404:2752474..2754690+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGAAAAACTCTGTCGAACTCCAAAACGCTTTCATTCGATCCGACGGT
CTTGTCGTCACCAGACTTTGATCCCCAAAACTTCGTCTCAGAGCTTCGTT
CACAAGTTCCATTGCGCATTCTTCGGGATGATCTCAGAACCCACGCCGTT
TCTTTACAATCTCAAATCGTAACAAATTTGCAAACAGACTTTCATACCTT
TAGCACACTTGGTGAAACTATTAATGATGCCAAAACACTTTGTCAGGCAA
CAAACCCAGCTTTAGAAAAGCTCCAGGGCATCTTAAAGGATCTCATTAGT
GACCTGGATGATCACATAAATACTCTAGAAAATACCCTAACTTATCGAAG
ACGTGTGAATGGGAAGATATCTGCTCTTCAAACGCTTGTTTACGCAAATG
ATTTACTACACAAGTGTGAAAGACTTTTGAATGAGTATCGTATGTTAACG
GATCGTACTACACCAGAGGCCTTACGCGTAATGGAAAGAATCGCAACAGA
AACAGCACAACTGAACTTTACCCTGAATCGGGCTGTGAAAGGTGCTTTTT
TGAAAAGTCTCACCCTTCGAATCGGCACTGTGCGCAGAAAAGTGAATAGT
TGTCTAGATGCCTGGCTTCGCCGATCTCTTCAGTCCGTGGAAGATTCTGA
AGTAGATTTACCCAGAGTTCTGTGTATGTATGTGTCAGCGGGAATTGCGA
GCCAAGCAGAAGAATTCTTCCGGCGAGAAGTGGTGCAGCCTTTCACATCT
ACTCGGCTGCGAATGACACCTATGTTAAAAAGAGCGGAATCCAGTGTGAA
TCCAAAGACAGTGACAGCCGCTCACGCGCTTGCAGCTGCTCACGAAGAAA
TCGTACAATTCCTTGGGTTGAAGGTCTTACCGATTGTCACATTGTGTGAA
TCCGAAGAACGACTGAGAGAAAAACTTGATTTTGTCGGTAATGCGGTATG
GCCGCAGATACAAAATGCAATAGCAATGAACATGACAGCTGCGTTCTCGC
CTGGAATCCCGAATGTTTTCCACAAGAGCTTTATGGCTGGAACCCAGATT
TACAATGCAGTTGAAGCATCGGTGACCAATGAAGAGTTTCGGAACCGATT
AAAGTCTTCAAGAGCCACTGTCGATTTTTGGAAGCATTGGAACCTTCCAG
TATACTTTCAACTTAGATTTCAAGAGATCACAACCCGTTTTGACCATCAC
CTTAATATGGGCCCTGTGTCGTCAATAGCATCACCTCTTGAAGTTGGGGA
CTGGGGTAGCTTGAGTTCCAAACCGATTCGCATTGATATCTATCAAGCTA
CACCAAGTGCCAGTCTAGCTGCCTGTCTGGAAAGGTGTTGGTCTGAAGAC
GTGTTTCACACCACTTTGACTCATCGATTCTTGCGCCTTTCTCTGCAACT
ATTAGCACGGTACTGCACATGGGTAAGAACAGGTCTAGCTGGGGAATGGT
CCAATCCAGATGCTCTACCAAAAGGTGCAGCCAGAATTTATAAGGATGTG
TCTGTATTTTTGGAATGTATGCCGTCCGAACTTTCTTCTATTATTCGATC
CAGGGGAGCGTCGCTTTCAGATGAGCTTCTTAGCAATATTGCATCGGCTC
TTGATAATGCCGTGAGTAAGTTTTCCTCATTACTACCGGAGCTCTCAACA
TCCATTTCCAACTCCCTTGGACGAAGCTGTGTGGAAAATCTGCAGCCATT
GCGAGGCATTCTGGCTACCTATCGCATGTCCTCTAAACAAATACCCACTG
CACATTCGACATTTGTGCCGAAGATTTTAAGGCCTTTGAAATCGTTCATC
AAGGAAAATGAAGATACATTTCCAGATGACGAACGGATTGCGTTAGCAAC
TGCTGTCGTCGAACAAACAGCTGAGGAATATCGAAAAATGGCTACGGACT
TATTGCAGAGGAATAAGAGTAGCGAAGCAACCTTACGAAGACTCAATATT
GGACGAAGTGGAGCGCTCTCTGGAACTAATTCAAGTGCAACCAGTGTAAT
CGAGAAGATTTCCACACAGCTCTGTTTGGACGTGCAAAAGTTTGCTGAAG
AAGCAGTGGCTCTTGGAGTGATAATTGAAGACTCAGCGTCCATTGTATTA
CTCAAAGAAAGTGTGCAAAACGAAAGAGCAACATCTTTGGAACCAACCGA
CATGAGAGGTCAAATAGATCCTGCGACATCAGTGCAGTCCATGCCAGAGA
TCAACCGGTCTTCATAA

Coding sequence (CDS) from alignment at ScGOVlb_3404:2752474..2754690+

>Gvermi11966.t1 ID=Gvermi11966.t1|Name=Gvermi11966.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2217bp|location=Sequence derived from alignment at ScGOVlb_3404:2752474..2754690+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGAAAAACTCTGTCGAACTCCAAAACGCTTTCATTCGATCCGACGGT
CTTGTCGTCACCAGACTTTGATCCCCAAAACTTCGTCTCAGAGCTTCGTT
CACAAGTTCCATTGCGCATTCTTCGGGATGATCTCAGAACCCACGCCGTT
TCTTTACAATCTCAAATCGTAACAAATTTGCAAACAGACTTTCATACCTT
TAGCACACTTGGTGAAACTATTAATGATGCCAAAACACTTTGTCAGGCAA
CAAACCCAGCTTTAGAAAAGCTCCAGGGCATCTTAAAGGATCTCATTAGT
GACCTGGATGATCACATAAATACTCTAGAAAATACCCTAACTTATCGAAG
ACGTGTGAATGGGAAGATATCTGCTCTTCAAACGCTTGTTTACGCAAATG
ATTTACTACACAAGTGTGAAAGACTTTTGAATGAGTATCGTATGTTAACG
GATCGTACTACACCAGAGGCCTTACGCGTAATGGAAAGAATCGCAACAGA
AACAGCACAACTGAACTTTACCCTGAATCGGGCTGTGAAAGGTGCTTTTT
TGAAAAGTCTCACCCTTCGAATCGGCACTGTGCGCAGAAAAGTGAATAGT
TGTCTAGATGCCTGGCTTCGCCGATCTCTTCAGTCCGTGGAAGATTCTGA
AGTAGATTTACCCAGAGTTCTGTGTATGTATGTGTCAGCGGGAATTGCGA
GCCAAGCAGAAGAATTCTTCCGGCGAGAAGTGGTGCAGCCTTTCACATCT
ACTCGGCTGCGAATGACACCTATGTTAAAAAGAGCGGAATCCAGTGTGAA
TCCAAAGACAGTGACAGCCGCTCACGCGCTTGCAGCTGCTCACGAAGAAA
TCGTACAATTCCTTGGGTTGAAGGTCTTACCGATTGTCACATTGTGTGAA
TCCGAAGAACGACTGAGAGAAAAACTTGATTTTGTCGGTAATGCGGTATG
GCCGCAGATACAAAATGCAATAGCAATGAACATGACAGCTGCGTTCTCGC
CTGGAATCCCGAATGTTTTCCACAAGAGCTTTATGGCTGGAACCCAGATT
TACAATGCAGTTGAAGCATCGGTGACCAATGAAGAGTTTCGGAACCGATT
AAAGTCTTCAAGAGCCACTGTCGATTTTTGGAAGCATTGGAACCTTCCAG
TATACTTTCAACTTAGATTTCAAGAGATCACAACCCGTTTTGACCATCAC
CTTAATATGGGCCCTGTGTCGTCAATAGCATCACCTCTTGAAGTTGGGGA
CTGGGGTAGCTTGAGTTCCAAACCGATTCGCATTGATATCTATCAAGCTA
CACCAAGTGCCAGTCTAGCTGCCTGTCTGGAAAGGTGTTGGTCTGAAGAC
GTGTTTCACACCACTTTGACTCATCGATTCTTGCGCCTTTCTCTGCAACT
ATTAGCACGGTACTGCACATGGGTAAGAACAGGTCTAGCTGGGGAATGGT
CCAATCCAGATGCTCTACCAAAAGGTGCAGCCAGAATTTATAAGGATGTG
TCTGTATTTTTGGAATGTATGCCGTCCGAACTTTCTTCTATTATTCGATC
CAGGGGAGCGTCGCTTTCAGATGAGCTTCTTAGCAATATTGCATCGGCTC
TTGATAATGCCGTGAGTAAGTTTTCCTCATTACTACCGGAGCTCTCAACA
TCCATTTCCAACTCCCTTGGACGAAGCTGTGTGGAAAATCTGCAGCCATT
GCGAGGCATTCTGGCTACCTATCGCATGTCCTCTAAACAAATACCCACTG
CACATTCGACATTTGTGCCGAAGATTTTAAGGCCTTTGAAATCGTTCATC
AAGGAAAATGAAGATACATTTCCAGATGACGAACGGATTGCGTTAGCAAC
TGCTGTCGTCGAACAAACAGCTGAGGAATATCGAAAAATGGCTACGGACT
TATTGCAGAGGAATAAGAGTAGCGAAGCAACCTTACGAAGACTCAATATT
GGACGAAGTGGAGCGCTCTCTGGAACTAATTCAAGTGCAACCAGTGTAAT
CGAGAAGATTTCCACACAGCTCTGTTTGGACGTGCAAAAGTTTGCTGAAG
AAGCAGTGGCTCTTGGAGTGATAATTGAAGACTCAGCGTCCATTGTATTA
CTCAAAGAAAGTGTGCAAAACGAAAGAGCAACATCTTTGGAACCAACCGA
CATGAGAGGTCAAATAGATCCTGCGACATCAGTGCAGTCCATGCCAGAGA
TCAACCGGTCTTCATAA