Gvermi11964.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11964.t1
Unique NameGvermi11964.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length527
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2748273..2749853 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11964Gvermi11964Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2748273..2749853 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11964.t1.stop1Gvermi11964.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2748273..2748275 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11964.t1.CDS1Gvermi11964.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2748273..2749853 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11964.t1.exon1Gvermi11964.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2748273..2749853 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11964.t1.start1Gvermi11964.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2749851..2749853 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11964.t1Gvermi11964.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2748273..2749853 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11964.t1 ID=Gvermi11964.t1|Name=Gvermi11964.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=527bp
MEAGNARRGNRWLEMIHTREVALLARRYGISLDEKLVQFLEEYSEIVLHV
TNKQKERKTNQAQLLQELENVNKVVQEEVSTIRTTLFQKNEEADRYFFTE
QHQETYLPIVHLAIKGLPELLVHVTRSYATRKKGISFGLLAKNNGGVLSG
ATARAANYLRRRCRDMHWELSVSEIVNLWYQQVLDIPPEDRMRPERNPPS
APKRRRLFRKRARSNNVVQVSAADITQEEKAQKAKRVLSEGGSEENSNRS
PISSQKRRRTDALGTAEIQVVPETALSVGDEEKDPVNVGGKEKALKPGVA
SDTEAEAKVGKNPLHIEPTSNSVEENVIGKRGKTGEITDSSPFEILIARK
EASRNLELEPGPRTTRYGSVLVQKADNEDQELGHETDKLKASAFLTPSSL
QRLSSLNGDYKQVDIDEGFDTIGGLADYDSDDSDNGGGDVNREQTQPRQQ
ICFEQASMSHEDRTSDSEKGEVAEGAMAVKTNDLQSVANEKQFVSFRFAD
ALSAVNLAGNDEVAPYVKREHEEQGA*
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spliced messenger RNA

>Gvermi11964.t1 ID=Gvermi11964.t1|Name=Gvermi11964.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1581bp|location=Sequence derived from alignment at ScGOVlb_3404:2748273..2749853- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGCAGGCAATGCCCGACGAGGAAATCGATGGCTCGAGATGATTCA
CACCAGAGAAGTTGCTTTGCTTGCAAGACGATACGGAATATCACTGGATG
AAAAGCTTGTACAGTTTTTGGAGGAGTATTCAGAAATAGTGCTTCATGTG
ACGAACAAGCAGAAAGAGAGGAAGACCAATCAAGCCCAACTGCTACAAGA
GCTTGAAAATGTTAACAAAGTTGTTCAAGAGGAAGTAAGCACTATCCGCA
CGACTTTGTTTCAGAAGAATGAGGAAGCAGACCGCTATTTTTTCACCGAG
CAGCACCAGGAGACATATTTACCTATCGTGCATTTGGCAATCAAAGGGCT
TCCAGAACTTCTAGTGCATGTCACCCGAAGTTACGCAACGAGAAAGAAAG
GTATATCATTCGGCTTGCTCGCGAAAAATAATGGGGGTGTGCTTTCAGGG
GCAACAGCTCGTGCGGCAAACTATCTTCGTCGGAGATGTCGGGACATGCA
TTGGGAGTTGTCTGTATCTGAGATTGTCAATCTTTGGTACCAGCAAGTGT
TAGATATTCCGCCAGAGGATCGCATGCGCCCTGAAAGGAACCCACCTTCT
GCGCCCAAACGACGAAGATTGTTTCGGAAACGAGCTCGCTCGAACAATGT
TGTACAGGTTTCTGCAGCCGATATTACGCAGGAGGAGAAAGCGCAAAAAG
CAAAACGAGTTCTCAGTGAGGGTGGTAGTGAAGAGAATTCGAATCGATCA
CCGATCAGCTCACAAAAACGAAGACGAACGGATGCTCTTGGCACAGCTGA
GATACAAGTGGTTCCGGAGACAGCGTTATCTGTCGGGGATGAGGAAAAAG
ATCCTGTTAATGTTGGAGGAAAAGAAAAGGCTTTGAAGCCCGGCGTCGCC
TCTGACACAGAAGCGGAGGCGAAGGTTGGTAAGAATCCTCTTCATATTGA
GCCAACGTCTAACAGTGTTGAAGAGAATGTTATTGGAAAGAGAGGAAAGA
CCGGCGAAATCACTGACTCGTCGCCTTTTGAGATTTTGATCGCAAGGAAG
GAGGCAAGCAGAAATCTCGAGCTAGAACCAGGACCAAGAACAACGAGGTA
TGGAAGTGTTTTGGTGCAAAAAGCGGACAATGAAGATCAAGAACTTGGGC
ACGAGACGGACAAATTGAAAGCGTCCGCATTTTTAACTCCAAGTTCACTG
CAAAGACTTTCTAGTTTGAATGGCGATTATAAGCAAGTAGATATTGATGA
AGGCTTCGATACAATTGGCGGTCTGGCCGACTACGATTCAGATGATTCTG
ACAATGGGGGAGGTGACGTTAACAGGGAACAAACACAACCTCGTCAGCAG
ATCTGCTTTGAACAGGCAAGCATGAGTCATGAAGACAGAACTAGCGATAG
CGAAAAAGGAGAGGTTGCAGAAGGGGCGATGGCAGTGAAGACGAATGATT
TGCAGTCGGTAGCGAACGAAAAGCAATTCGTTTCATTTCGATTCGCAGAC
GCATTAAGTGCGGTTAACTTAGCTGGCAATGATGAAGTTGCACCATATGT
GAAACGAGAACATGAGGAACAAGGAGCATAA
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protein sequence of Gvermi11964.t1

>Gvermi11964.t1 ID=Gvermi11964.t1|Name=Gvermi11964.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=527bp
MEAGNARRGNRWLEMIHTREVALLARRYGISLDEKLVQFLEEYSEIVLHV
TNKQKERKTNQAQLLQELENVNKVVQEEVSTIRTTLFQKNEEADRYFFTE
QHQETYLPIVHLAIKGLPELLVHVTRSYATRKKGISFGLLAKNNGGVLSG
ATARAANYLRRRCRDMHWELSVSEIVNLWYQQVLDIPPEDRMRPERNPPS
APKRRRLFRKRARSNNVVQVSAADITQEEKAQKAKRVLSEGGSEENSNRS
PISSQKRRRTDALGTAEIQVVPETALSVGDEEKDPVNVGGKEKALKPGVA
SDTEAEAKVGKNPLHIEPTSNSVEENVIGKRGKTGEITDSSPFEILIARK
EASRNLELEPGPRTTRYGSVLVQKADNEDQELGHETDKLKASAFLTPSSL
QRLSSLNGDYKQVDIDEGFDTIGGLADYDSDDSDNGGGDVNREQTQPRQQ
ICFEQASMSHEDRTSDSEKGEVAEGAMAVKTNDLQSVANEKQFVSFRFAD
ALSAVNLAGNDEVAPYVKREHEEQGA*
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mRNA from alignment at ScGOVlb_3404:2748273..2749853-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11964.t1 ID=Gvermi11964.t1|Name=Gvermi11964.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1581bp|location=Sequence derived from alignment at ScGOVlb_3404:2748273..2749853- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAGCAGGCAATGCCCGACGAGGAAATCGATGGCTCGAGATGATTCA
CACCAGAGAAGTTGCTTTGCTTGCAAGACGATACGGAATATCACTGGATG
AAAAGCTTGTACAGTTTTTGGAGGAGTATTCAGAAATAGTGCTTCATGTG
ACGAACAAGCAGAAAGAGAGGAAGACCAATCAAGCCCAACTGCTACAAGA
GCTTGAAAATGTTAACAAAGTTGTTCAAGAGGAAGTAAGCACTATCCGCA
CGACTTTGTTTCAGAAGAATGAGGAAGCAGACCGCTATTTTTTCACCGAG
CAGCACCAGGAGACATATTTACCTATCGTGCATTTGGCAATCAAAGGGCT
TCCAGAACTTCTAGTGCATGTCACCCGAAGTTACGCAACGAGAAAGAAAG
GTATATCATTCGGCTTGCTCGCGAAAAATAATGGGGGTGTGCTTTCAGGG
GCAACAGCTCGTGCGGCAAACTATCTTCGTCGGAGATGTCGGGACATGCA
TTGGGAGTTGTCTGTATCTGAGATTGTCAATCTTTGGTACCAGCAAGTGT
TAGATATTCCGCCAGAGGATCGCATGCGCCCTGAAAGGAACCCACCTTCT
GCGCCCAAACGACGAAGATTGTTTCGGAAACGAGCTCGCTCGAACAATGT
TGTACAGGTTTCTGCAGCCGATATTACGCAGGAGGAGAAAGCGCAAAAAG
CAAAACGAGTTCTCAGTGAGGGTGGTAGTGAAGAGAATTCGAATCGATCA
CCGATCAGCTCACAAAAACGAAGACGAACGGATGCTCTTGGCACAGCTGA
GATACAAGTGGTTCCGGAGACAGCGTTATCTGTCGGGGATGAGGAAAAAG
ATCCTGTTAATGTTGGAGGAAAAGAAAAGGCTTTGAAGCCCGGCGTCGCC
TCTGACACAGAAGCGGAGGCGAAGGTTGGTAAGAATCCTCTTCATATTGA
GCCAACGTCTAACAGTGTTGAAGAGAATGTTATTGGAAAGAGAGGAAAGA
CCGGCGAAATCACTGACTCGTCGCCTTTTGAGATTTTGATCGCAAGGAAG
GAGGCAAGCAGAAATCTCGAGCTAGAACCAGGACCAAGAACAACGAGGTA
TGGAAGTGTTTTGGTGCAAAAAGCGGACAATGAAGATCAAGAACTTGGGC
ACGAGACGGACAAATTGAAAGCGTCCGCATTTTTAACTCCAAGTTCACTG
CAAAGACTTTCTAGTTTGAATGGCGATTATAAGCAAGTAGATATTGATGA
AGGCTTCGATACAATTGGCGGTCTGGCCGACTACGATTCAGATGATTCTG
ACAATGGGGGAGGTGACGTTAACAGGGAACAAACACAACCTCGTCAGCAG
ATCTGCTTTGAACAGGCAAGCATGAGTCATGAAGACAGAACTAGCGATAG
CGAAAAAGGAGAGGTTGCAGAAGGGGCGATGGCAGTGAAGACGAATGATT
TGCAGTCGGTAGCGAACGAAAAGCAATTCGTTTCATTTCGATTCGCAGAC
GCATTAAGTGCGGTTAACTTAGCTGGCAATGATGAAGTTGCACCATATGT
GAAACGAGAACATGAGGAACAAGGAGCATAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2748273..2749853-

>Gvermi11964.t1 ID=Gvermi11964.t1|Name=Gvermi11964.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1581bp|location=Sequence derived from alignment at ScGOVlb_3404:2748273..2749853- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAGCAGGCAATGCCCGACGAGGAAATCGATGGCTCGAGATGATTCA
CACCAGAGAAGTTGCTTTGCTTGCAAGACGATACGGAATATCACTGGATG
AAAAGCTTGTACAGTTTTTGGAGGAGTATTCAGAAATAGTGCTTCATGTG
ACGAACAAGCAGAAAGAGAGGAAGACCAATCAAGCCCAACTGCTACAAGA
GCTTGAAAATGTTAACAAAGTTGTTCAAGAGGAAGTAAGCACTATCCGCA
CGACTTTGTTTCAGAAGAATGAGGAAGCAGACCGCTATTTTTTCACCGAG
CAGCACCAGGAGACATATTTACCTATCGTGCATTTGGCAATCAAAGGGCT
TCCAGAACTTCTAGTGCATGTCACCCGAAGTTACGCAACGAGAAAGAAAG
GTATATCATTCGGCTTGCTCGCGAAAAATAATGGGGGTGTGCTTTCAGGG
GCAACAGCTCGTGCGGCAAACTATCTTCGTCGGAGATGTCGGGACATGCA
TTGGGAGTTGTCTGTATCTGAGATTGTCAATCTTTGGTACCAGCAAGTGT
TAGATATTCCGCCAGAGGATCGCATGCGCCCTGAAAGGAACCCACCTTCT
GCGCCCAAACGACGAAGATTGTTTCGGAAACGAGCTCGCTCGAACAATGT
TGTACAGGTTTCTGCAGCCGATATTACGCAGGAGGAGAAAGCGCAAAAAG
CAAAACGAGTTCTCAGTGAGGGTGGTAGTGAAGAGAATTCGAATCGATCA
CCGATCAGCTCACAAAAACGAAGACGAACGGATGCTCTTGGCACAGCTGA
GATACAAGTGGTTCCGGAGACAGCGTTATCTGTCGGGGATGAGGAAAAAG
ATCCTGTTAATGTTGGAGGAAAAGAAAAGGCTTTGAAGCCCGGCGTCGCC
TCTGACACAGAAGCGGAGGCGAAGGTTGGTAAGAATCCTCTTCATATTGA
GCCAACGTCTAACAGTGTTGAAGAGAATGTTATTGGAAAGAGAGGAAAGA
CCGGCGAAATCACTGACTCGTCGCCTTTTGAGATTTTGATCGCAAGGAAG
GAGGCAAGCAGAAATCTCGAGCTAGAACCAGGACCAAGAACAACGAGGTA
TGGAAGTGTTTTGGTGCAAAAAGCGGACAATGAAGATCAAGAACTTGGGC
ACGAGACGGACAAATTGAAAGCGTCCGCATTTTTAACTCCAAGTTCACTG
CAAAGACTTTCTAGTTTGAATGGCGATTATAAGCAAGTAGATATTGATGA
AGGCTTCGATACAATTGGCGGTCTGGCCGACTACGATTCAGATGATTCTG
ACAATGGGGGAGGTGACGTTAACAGGGAACAAACACAACCTCGTCAGCAG
ATCTGCTTTGAACAGGCAAGCATGAGTCATGAAGACAGAACTAGCGATAG
CGAAAAAGGAGAGGTTGCAGAAGGGGCGATGGCAGTGAAGACGAATGATT
TGCAGTCGGTAGCGAACGAAAAGCAATTCGTTTCATTTCGATTCGCAGAC
GCATTAAGTGCGGTTAACTTAGCTGGCAATGATGAAGTTGCACCATATGT
GAAACGAGAACATGAGGAACAAGGAGCATAA
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