Gvermi11963.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11963.t1
Unique NameGvermi11963.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length464
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2745966..2747357 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog89462.XP_006052622.1
Preferred nameMUTYH
PFAMsEndIII_4Fe-2S,HhH-GPD,NUDIX_4
Max annot lvl33208|Metazoa
KEGG koko:K03575
KEGG Pathwayko03410,map03410
GOsGO:0000700,GO:0000701,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006298,GO:0006304,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0031974,GO:0031981,GO:0032404,GO:0032407,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045007,GO:0046483,GO:0050896,GO:0051716,GO:0070013,GO:0071704,GO:0090304,GO:0140097,GO:1901360
Evalue2.65e-69
EggNOG OGsCOG1194@1|root,KOG2457@2759|Eukaryota,38HVJ@33154|Opisthokonta,3BJKG@33208|Metazoa,3D1BV@33213|Bilateria,483U1@7711|Chordata,491MB@7742|Vertebrata,3J5IT@40674|Mammalia,4IZG7@91561|Cetartiodactyla
DescriptionDNA glycosylase
COG categoryL
BRITEko00000,ko00001,ko01000,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11963Gvermi11963Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2745966..2747357 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11963.t1.stop1Gvermi11963.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2745966..2745968 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11963.t1.CDS1Gvermi11963.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2745966..2747357 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11963.t1.exon1Gvermi11963.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2745966..2747357 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11963.t1.start1Gvermi11963.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2747355..2747357 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11963.t1Gvermi11963.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2745966..2747357 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11963.t1 ID=Gvermi11963.t1|Name=Gvermi11963.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=464bp
MPSRHRRPPARYIPIAGRPKKRQRVRTVQLEEQERESTETSNVLDLDRTL
SFTATQIQDLRQRLLDWYVDNYRRLPWRASPRHRKDGRALLPKQRVETQS
CAGAPYAVWISEMMSQQTQISVVVEYYKRWMHKFPTVHALANASLNEVYE
LWAGLGYYRRARFVHQAAKQIVEAHDGVIPQDVEQLRKLCGVGLYTAGAI
SSIAYGNAVPLVDGNVQRVFSRLRTSMTKTLTSQSELSRAYWRLASTCVQ
DIENAGDFNQALMELGAMVCKPKTALCDICPVSDLCDAYKEASVAGVKAG
EYVKCYPIKDKRKSTKVRKERVLALVVCDVGKGGGGRKVLMRVKEGDGLL
AGLLETPNIVLSSGGGDEEHKGLEALLEEVNNGVDIDCDKRLIEVGRVTH
VFSHISQSILIKVLTVERGEQLEGAKANGFGWIGEADVGTCAISAQMKKV
IGSAMSKLDSLKR*
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spliced messenger RNA

>Gvermi11963.t1 ID=Gvermi11963.t1|Name=Gvermi11963.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1392bp|location=Sequence derived from alignment at ScGOVlb_3404:2745966..2747357- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCAGCCGTCACCGACGGCCTCCAGCTCGATACATTCCTATTGCTGG
TCGGCCGAAGAAACGGCAGCGAGTACGCACAGTGCAATTGGAAGAGCAGG
AGCGGGAGTCCACCGAAACTTCTAATGTGCTGGATTTAGACAGAACATTA
TCGTTCACCGCGACGCAAATACAAGATCTGCGTCAGAGATTGTTGGATTG
GTATGTTGACAATTACCGACGTTTGCCGTGGAGGGCGTCTCCAAGGCACC
GCAAAGATGGAAGAGCGCTGCTTCCAAAGCAACGTGTGGAGACGCAGTCT
TGTGCAGGCGCTCCGTACGCGGTGTGGATCTCCGAGATGATGAGCCAGCA
AACTCAAATCTCTGTCGTCGTGGAGTATTATAAGCGATGGATGCACAAGT
TCCCGACCGTTCACGCCCTGGCCAACGCGAGTTTGAACGAAGTGTATGAG
CTATGGGCAGGGCTTGGATACTACAGGCGCGCCAGATTTGTGCACCAAGC
CGCAAAACAAATCGTCGAAGCGCATGACGGCGTGATACCACAAGATGTGG
AACAGCTTCGAAAGCTGTGCGGAGTGGGCTTGTACACGGCTGGGGCGATA
AGTTCAATCGCGTATGGAAACGCTGTGCCGCTGGTTGATGGAAATGTTCA
ACGCGTATTCTCACGGCTGCGCACGAGCATGACGAAAACGTTAACCAGTC
AGAGCGAACTATCTCGAGCTTATTGGCGATTGGCTTCCACGTGCGTGCAA
GATATTGAAAATGCGGGTGATTTCAATCAGGCGCTGATGGAACTCGGGGC
TATGGTATGTAAGCCGAAGACGGCCTTGTGTGACATATGTCCTGTGAGTG
ACTTATGTGATGCTTACAAGGAAGCGAGTGTAGCTGGTGTGAAGGCTGGC
GAGTACGTGAAGTGCTATCCGATCAAAGACAAACGCAAGAGCACAAAGGT
TCGGAAAGAGAGAGTTTTGGCGTTAGTTGTGTGCGATGTGGGCAAAGGTG
GCGGCGGCAGAAAGGTTCTAATGAGAGTGAAAGAGGGGGATGGTCTACTT
GCTGGTCTTTTGGAGACGCCCAACATAGTGTTGTCGAGTGGAGGTGGCGA
TGAAGAGCATAAGGGGCTTGAAGCATTGCTGGAAGAGGTGAACAACGGGG
TGGATATCGATTGTGACAAGCGGCTGATTGAGGTTGGAAGAGTGACGCAT
GTGTTTTCACACATATCGCAGAGCATTTTGATCAAAGTGTTGACAGTTGA
AAGAGGAGAGCAGCTGGAGGGCGCCAAAGCGAACGGGTTTGGATGGATCG
GCGAGGCGGACGTGGGCACATGTGCGATTTCGGCGCAAATGAAGAAAGTG
ATTGGCAGTGCGATGAGCAAACTGGATTCGCTCAAGCGATGA
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protein sequence of Gvermi11963.t1

>Gvermi11963.t1 ID=Gvermi11963.t1|Name=Gvermi11963.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=464bp
MPSRHRRPPARYIPIAGRPKKRQRVRTVQLEEQERESTETSNVLDLDRTL
SFTATQIQDLRQRLLDWYVDNYRRLPWRASPRHRKDGRALLPKQRVETQS
CAGAPYAVWISEMMSQQTQISVVVEYYKRWMHKFPTVHALANASLNEVYE
LWAGLGYYRRARFVHQAAKQIVEAHDGVIPQDVEQLRKLCGVGLYTAGAI
SSIAYGNAVPLVDGNVQRVFSRLRTSMTKTLTSQSELSRAYWRLASTCVQ
DIENAGDFNQALMELGAMVCKPKTALCDICPVSDLCDAYKEASVAGVKAG
EYVKCYPIKDKRKSTKVRKERVLALVVCDVGKGGGGRKVLMRVKEGDGLL
AGLLETPNIVLSSGGGDEEHKGLEALLEEVNNGVDIDCDKRLIEVGRVTH
VFSHISQSILIKVLTVERGEQLEGAKANGFGWIGEADVGTCAISAQMKKV
IGSAMSKLDSLKR*
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mRNA from alignment at ScGOVlb_3404:2745966..2747357-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11963.t1 ID=Gvermi11963.t1|Name=Gvermi11963.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1392bp|location=Sequence derived from alignment at ScGOVlb_3404:2745966..2747357- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCAGCCGTCACCGACGGCCTCCAGCTCGATACATTCCTATTGCTGG
TCGGCCGAAGAAACGGCAGCGAGTACGCACAGTGCAATTGGAAGAGCAGG
AGCGGGAGTCCACCGAAACTTCTAATGTGCTGGATTTAGACAGAACATTA
TCGTTCACCGCGACGCAAATACAAGATCTGCGTCAGAGATTGTTGGATTG
GTATGTTGACAATTACCGACGTTTGCCGTGGAGGGCGTCTCCAAGGCACC
GCAAAGATGGAAGAGCGCTGCTTCCAAAGCAACGTGTGGAGACGCAGTCT
TGTGCAGGCGCTCCGTACGCGGTGTGGATCTCCGAGATGATGAGCCAGCA
AACTCAAATCTCTGTCGTCGTGGAGTATTATAAGCGATGGATGCACAAGT
TCCCGACCGTTCACGCCCTGGCCAACGCGAGTTTGAACGAAGTGTATGAG
CTATGGGCAGGGCTTGGATACTACAGGCGCGCCAGATTTGTGCACCAAGC
CGCAAAACAAATCGTCGAAGCGCATGACGGCGTGATACCACAAGATGTGG
AACAGCTTCGAAAGCTGTGCGGAGTGGGCTTGTACACGGCTGGGGCGATA
AGTTCAATCGCGTATGGAAACGCTGTGCCGCTGGTTGATGGAAATGTTCA
ACGCGTATTCTCACGGCTGCGCACGAGCATGACGAAAACGTTAACCAGTC
AGAGCGAACTATCTCGAGCTTATTGGCGATTGGCTTCCACGTGCGTGCAA
GATATTGAAAATGCGGGTGATTTCAATCAGGCGCTGATGGAACTCGGGGC
TATGGTATGTAAGCCGAAGACGGCCTTGTGTGACATATGTCCTGTGAGTG
ACTTATGTGATGCTTACAAGGAAGCGAGTGTAGCTGGTGTGAAGGCTGGC
GAGTACGTGAAGTGCTATCCGATCAAAGACAAACGCAAGAGCACAAAGGT
TCGGAAAGAGAGAGTTTTGGCGTTAGTTGTGTGCGATGTGGGCAAAGGTG
GCGGCGGCAGAAAGGTTCTAATGAGAGTGAAAGAGGGGGATGGTCTACTT
GCTGGTCTTTTGGAGACGCCCAACATAGTGTTGTCGAGTGGAGGTGGCGA
TGAAGAGCATAAGGGGCTTGAAGCATTGCTGGAAGAGGTGAACAACGGGG
TGGATATCGATTGTGACAAGCGGCTGATTGAGGTTGGAAGAGTGACGCAT
GTGTTTTCACACATATCGCAGAGCATTTTGATCAAAGTGTTGACAGTTGA
AAGAGGAGAGCAGCTGGAGGGCGCCAAAGCGAACGGGTTTGGATGGATCG
GCGAGGCGGACGTGGGCACATGTGCGATTTCGGCGCAAATGAAGAAAGTG
ATTGGCAGTGCGATGAGCAAACTGGATTCGCTCAAGCGATGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2745966..2747357-

>Gvermi11963.t1 ID=Gvermi11963.t1|Name=Gvermi11963.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1392bp|location=Sequence derived from alignment at ScGOVlb_3404:2745966..2747357- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCAGCCGTCACCGACGGCCTCCAGCTCGATACATTCCTATTGCTGG
TCGGCCGAAGAAACGGCAGCGAGTACGCACAGTGCAATTGGAAGAGCAGG
AGCGGGAGTCCACCGAAACTTCTAATGTGCTGGATTTAGACAGAACATTA
TCGTTCACCGCGACGCAAATACAAGATCTGCGTCAGAGATTGTTGGATTG
GTATGTTGACAATTACCGACGTTTGCCGTGGAGGGCGTCTCCAAGGCACC
GCAAAGATGGAAGAGCGCTGCTTCCAAAGCAACGTGTGGAGACGCAGTCT
TGTGCAGGCGCTCCGTACGCGGTGTGGATCTCCGAGATGATGAGCCAGCA
AACTCAAATCTCTGTCGTCGTGGAGTATTATAAGCGATGGATGCACAAGT
TCCCGACCGTTCACGCCCTGGCCAACGCGAGTTTGAACGAAGTGTATGAG
CTATGGGCAGGGCTTGGATACTACAGGCGCGCCAGATTTGTGCACCAAGC
CGCAAAACAAATCGTCGAAGCGCATGACGGCGTGATACCACAAGATGTGG
AACAGCTTCGAAAGCTGTGCGGAGTGGGCTTGTACACGGCTGGGGCGATA
AGTTCAATCGCGTATGGAAACGCTGTGCCGCTGGTTGATGGAAATGTTCA
ACGCGTATTCTCACGGCTGCGCACGAGCATGACGAAAACGTTAACCAGTC
AGAGCGAACTATCTCGAGCTTATTGGCGATTGGCTTCCACGTGCGTGCAA
GATATTGAAAATGCGGGTGATTTCAATCAGGCGCTGATGGAACTCGGGGC
TATGGTATGTAAGCCGAAGACGGCCTTGTGTGACATATGTCCTGTGAGTG
ACTTATGTGATGCTTACAAGGAAGCGAGTGTAGCTGGTGTGAAGGCTGGC
GAGTACGTGAAGTGCTATCCGATCAAAGACAAACGCAAGAGCACAAAGGT
TCGGAAAGAGAGAGTTTTGGCGTTAGTTGTGTGCGATGTGGGCAAAGGTG
GCGGCGGCAGAAAGGTTCTAATGAGAGTGAAAGAGGGGGATGGTCTACTT
GCTGGTCTTTTGGAGACGCCCAACATAGTGTTGTCGAGTGGAGGTGGCGA
TGAAGAGCATAAGGGGCTTGAAGCATTGCTGGAAGAGGTGAACAACGGGG
TGGATATCGATTGTGACAAGCGGCTGATTGAGGTTGGAAGAGTGACGCAT
GTGTTTTCACACATATCGCAGAGCATTTTGATCAAAGTGTTGACAGTTGA
AAGAGGAGAGCAGCTGGAGGGCGCCAAAGCGAACGGGTTTGGATGGATCG
GCGAGGCGGACGTGGGCACATGTGCGATTTCGGCGCAAATGAAGAAAGTG
ATTGGCAGTGCGATGAGCAAACTGGATTCGCTCAAGCGATGA
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