Gvermi11962.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11962.t1
Unique NameGvermi11962.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length506
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2743358..2744875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28583.AMAG_02075T0
PFAMszf-C2H2,zf-met
Max annot lvl4751|Fungi
KEGG koko:K09191
GOsGO:0000182,GO:0000995,GO:0001016,GO:0001030,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006359,GO:0006383,GO:0006384,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031326,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0080084,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:0140223,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1903506,GO:1990837,GO:2000112,GO:2001141
Evalue3.31e-06
EggNOG OGsKOG1721@1|root,KOG1721@2759|Eukaryota,39CGA@33154|Opisthokonta,3NVT7@4751|Fungi
DescriptionTranscription factor
COG categoryS
BRITEko00000,ko03000,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11962Gvermi11962Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2743358..2744875 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11962.t1.stop1Gvermi11962.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2743358..2743360 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11962.t1.CDS1Gvermi11962.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2743358..2744875 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11962.t1.exon1Gvermi11962.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2743358..2744875 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11962.t1.start1Gvermi11962.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2744873..2744875 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11962.t1Gvermi11962.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2743358..2744875 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11962.t1 ID=Gvermi11962.t1|Name=Gvermi11962.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=506bp
MPSPQQCPMPPQQPFSTYSDLLTCFPLPTGMESIFSSPATDVADPTCESA
PVDPAVHTKFMLSSSEPLPTAPPFQQKSTTHPSIDPFLTSSFYDASFLAA
APKPEAHILPITVPPQPQPPPHLQNAIASDLALPPALLSPSASLCPFTHD
STSPCDSPQSSRPHCDRPRAQKRKRTLSALRATAAHNAPDVHLTDAELQS
IGEMHESDLQLDQSKQIYSALRQLKQVLATHNFRIKSLHIEPGTEDDQMA
FTFSKCSPTADNAALSPNKVTNCHSADDNPRPAKRSRQSSNADGNCSSRI
SCVVCMKSMSDMETLVRHFRHTHQDLKAYSCPRCGGFYASENTLWTHIRN
VHTETPRKYKCSMCDASYDSFGAKTRHEHATHPECKGLYKCTYEGCTVEY
KFPAHLENHAIKEHPGFRPFVCEVESCAKGFPSLNGLTRHRREVHERVLV
YRCSCGKTHPKRCHLKRHLLNVHKMSPERVKQEMKKQPHPGLLHLVPPGP
PAAIE*
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spliced messenger RNA

>Gvermi11962.t1 ID=Gvermi11962.t1|Name=Gvermi11962.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1518bp|location=Sequence derived from alignment at ScGOVlb_3404:2743358..2744875- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCTCCCCTCAACAATGCCCCATGCCTCCCCAGCAACCCTTCTCCAC
TTACTCTGACCTGCTCACCTGTTTCCCGTTGCCTACCGGCATGGAGTCCA
TCTTCTCATCGCCCGCCACAGATGTGGCCGACCCCACCTGCGAGTCTGCG
CCGGTGGACCCGGCCGTCCACACCAAGTTCATGCTTTCCTCCTCCGAGCC
ACTGCCCACCGCTCCGCCGTTCCAGCAAAAGTCTACCACTCACCCGAGTA
TCGACCCGTTTCTCACGTCGTCGTTTTACGATGCAAGCTTTCTGGCCGCT
GCCCCAAAGCCCGAAGCGCACATCCTTCCGATCACCGTTCCGCCTCAGCC
GCAGCCCCCGCCCCACCTGCAAAACGCCATTGCCTCAGATCTGGCGTTGC
CGCCCGCTCTGCTCTCGCCGTCCGCCTCGCTGTGTCCTTTCACGCACGAC
TCCACCTCCCCGTGTGACTCTCCACAATCTTCGCGCCCTCACTGCGACCG
CCCACGCGCGCAGAAGAGAAAGCGCACTCTGTCCGCGCTCCGGGCCACAG
CCGCGCACAATGCGCCCGACGTGCACCTCACCGACGCTGAGCTACAATCC
ATCGGTGAAATGCACGAGTCAGACCTGCAGCTTGACCAGTCCAAGCAGAT
CTATTCCGCGCTGAGGCAGCTAAAGCAAGTGCTCGCCACCCATAACTTTC
GCATCAAGTCGCTGCACATCGAGCCCGGTACGGAGGATGACCAGATGGCG
TTCACCTTCTCCAAGTGCTCACCCACAGCCGACAACGCCGCTTTGTCGCC
CAACAAGGTCACAAACTGCCACTCCGCAGACGACAATCCACGCCCTGCTA
AACGATCTCGTCAGTCTTCCAATGCCGATGGCAACTGTTCCTCTCGTATT
AGTTGTGTTGTGTGCATGAAATCCATGTCCGACATGGAAACGCTGGTGCG
TCACTTTCGTCACACGCACCAGGACCTGAAGGCGTACTCGTGTCCGCGAT
GCGGCGGGTTCTATGCGTCGGAGAACACGTTGTGGACGCACATCCGCAAC
GTGCACACCGAGACGCCTCGCAAGTACAAATGTAGCATGTGCGATGCGTC
GTACGATTCGTTCGGAGCCAAAACCAGACACGAGCACGCCACGCACCCCG
AGTGCAAAGGGCTGTATAAGTGCACGTACGAAGGGTGCACGGTTGAGTAC
AAGTTCCCGGCGCACCTAGAGAACCATGCCATCAAGGAGCATCCGGGGTT
TCGCCCGTTCGTGTGCGAGGTGGAGTCGTGTGCGAAGGGGTTTCCAAGCC
TGAACGGCCTCACGCGGCACCGCCGCGAAGTGCACGAGCGCGTGCTGGTG
TACCGCTGCTCATGTGGTAAAACGCACCCGAAGCGGTGCCACCTGAAGAG
GCACCTGCTCAACGTGCACAAAATGTCTCCGGAGCGCGTGAAACAGGAAA
TGAAGAAGCAGCCTCACCCTGGACTGCTGCACCTCGTTCCGCCCGGCCCA
CCGGCGGCGATTGAGTAA
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protein sequence of Gvermi11962.t1

>Gvermi11962.t1 ID=Gvermi11962.t1|Name=Gvermi11962.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=506bp
MPSPQQCPMPPQQPFSTYSDLLTCFPLPTGMESIFSSPATDVADPTCESA
PVDPAVHTKFMLSSSEPLPTAPPFQQKSTTHPSIDPFLTSSFYDASFLAA
APKPEAHILPITVPPQPQPPPHLQNAIASDLALPPALLSPSASLCPFTHD
STSPCDSPQSSRPHCDRPRAQKRKRTLSALRATAAHNAPDVHLTDAELQS
IGEMHESDLQLDQSKQIYSALRQLKQVLATHNFRIKSLHIEPGTEDDQMA
FTFSKCSPTADNAALSPNKVTNCHSADDNPRPAKRSRQSSNADGNCSSRI
SCVVCMKSMSDMETLVRHFRHTHQDLKAYSCPRCGGFYASENTLWTHIRN
VHTETPRKYKCSMCDASYDSFGAKTRHEHATHPECKGLYKCTYEGCTVEY
KFPAHLENHAIKEHPGFRPFVCEVESCAKGFPSLNGLTRHRREVHERVLV
YRCSCGKTHPKRCHLKRHLLNVHKMSPERVKQEMKKQPHPGLLHLVPPGP
PAAIE*
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mRNA from alignment at ScGOVlb_3404:2743358..2744875-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11962.t1 ID=Gvermi11962.t1|Name=Gvermi11962.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1518bp|location=Sequence derived from alignment at ScGOVlb_3404:2743358..2744875- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCTCCCCTCAACAATGCCCCATGCCTCCCCAGCAACCCTTCTCCAC
TTACTCTGACCTGCTCACCTGTTTCCCGTTGCCTACCGGCATGGAGTCCA
TCTTCTCATCGCCCGCCACAGATGTGGCCGACCCCACCTGCGAGTCTGCG
CCGGTGGACCCGGCCGTCCACACCAAGTTCATGCTTTCCTCCTCCGAGCC
ACTGCCCACCGCTCCGCCGTTCCAGCAAAAGTCTACCACTCACCCGAGTA
TCGACCCGTTTCTCACGTCGTCGTTTTACGATGCAAGCTTTCTGGCCGCT
GCCCCAAAGCCCGAAGCGCACATCCTTCCGATCACCGTTCCGCCTCAGCC
GCAGCCCCCGCCCCACCTGCAAAACGCCATTGCCTCAGATCTGGCGTTGC
CGCCCGCTCTGCTCTCGCCGTCCGCCTCGCTGTGTCCTTTCACGCACGAC
TCCACCTCCCCGTGTGACTCTCCACAATCTTCGCGCCCTCACTGCGACCG
CCCACGCGCGCAGAAGAGAAAGCGCACTCTGTCCGCGCTCCGGGCCACAG
CCGCGCACAATGCGCCCGACGTGCACCTCACCGACGCTGAGCTACAATCC
ATCGGTGAAATGCACGAGTCAGACCTGCAGCTTGACCAGTCCAAGCAGAT
CTATTCCGCGCTGAGGCAGCTAAAGCAAGTGCTCGCCACCCATAACTTTC
GCATCAAGTCGCTGCACATCGAGCCCGGTACGGAGGATGACCAGATGGCG
TTCACCTTCTCCAAGTGCTCACCCACAGCCGACAACGCCGCTTTGTCGCC
CAACAAGGTCACAAACTGCCACTCCGCAGACGACAATCCACGCCCTGCTA
AACGATCTCGTCAGTCTTCCAATGCCGATGGCAACTGTTCCTCTCGTATT
AGTTGTGTTGTGTGCATGAAATCCATGTCCGACATGGAAACGCTGGTGCG
TCACTTTCGTCACACGCACCAGGACCTGAAGGCGTACTCGTGTCCGCGAT
GCGGCGGGTTCTATGCGTCGGAGAACACGTTGTGGACGCACATCCGCAAC
GTGCACACCGAGACGCCTCGCAAGTACAAATGTAGCATGTGCGATGCGTC
GTACGATTCGTTCGGAGCCAAAACCAGACACGAGCACGCCACGCACCCCG
AGTGCAAAGGGCTGTATAAGTGCACGTACGAAGGGTGCACGGTTGAGTAC
AAGTTCCCGGCGCACCTAGAGAACCATGCCATCAAGGAGCATCCGGGGTT
TCGCCCGTTCGTGTGCGAGGTGGAGTCGTGTGCGAAGGGGTTTCCAAGCC
TGAACGGCCTCACGCGGCACCGCCGCGAAGTGCACGAGCGCGTGCTGGTG
TACCGCTGCTCATGTGGTAAAACGCACCCGAAGCGGTGCCACCTGAAGAG
GCACCTGCTCAACGTGCACAAAATGTCTCCGGAGCGCGTGAAACAGGAAA
TGAAGAAGCAGCCTCACCCTGGACTGCTGCACCTCGTTCCGCCCGGCCCA
CCGGCGGCGATTGAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2743358..2744875-

>Gvermi11962.t1 ID=Gvermi11962.t1|Name=Gvermi11962.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1518bp|location=Sequence derived from alignment at ScGOVlb_3404:2743358..2744875- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCTCCCCTCAACAATGCCCCATGCCTCCCCAGCAACCCTTCTCCAC
TTACTCTGACCTGCTCACCTGTTTCCCGTTGCCTACCGGCATGGAGTCCA
TCTTCTCATCGCCCGCCACAGATGTGGCCGACCCCACCTGCGAGTCTGCG
CCGGTGGACCCGGCCGTCCACACCAAGTTCATGCTTTCCTCCTCCGAGCC
ACTGCCCACCGCTCCGCCGTTCCAGCAAAAGTCTACCACTCACCCGAGTA
TCGACCCGTTTCTCACGTCGTCGTTTTACGATGCAAGCTTTCTGGCCGCT
GCCCCAAAGCCCGAAGCGCACATCCTTCCGATCACCGTTCCGCCTCAGCC
GCAGCCCCCGCCCCACCTGCAAAACGCCATTGCCTCAGATCTGGCGTTGC
CGCCCGCTCTGCTCTCGCCGTCCGCCTCGCTGTGTCCTTTCACGCACGAC
TCCACCTCCCCGTGTGACTCTCCACAATCTTCGCGCCCTCACTGCGACCG
CCCACGCGCGCAGAAGAGAAAGCGCACTCTGTCCGCGCTCCGGGCCACAG
CCGCGCACAATGCGCCCGACGTGCACCTCACCGACGCTGAGCTACAATCC
ATCGGTGAAATGCACGAGTCAGACCTGCAGCTTGACCAGTCCAAGCAGAT
CTATTCCGCGCTGAGGCAGCTAAAGCAAGTGCTCGCCACCCATAACTTTC
GCATCAAGTCGCTGCACATCGAGCCCGGTACGGAGGATGACCAGATGGCG
TTCACCTTCTCCAAGTGCTCACCCACAGCCGACAACGCCGCTTTGTCGCC
CAACAAGGTCACAAACTGCCACTCCGCAGACGACAATCCACGCCCTGCTA
AACGATCTCGTCAGTCTTCCAATGCCGATGGCAACTGTTCCTCTCGTATT
AGTTGTGTTGTGTGCATGAAATCCATGTCCGACATGGAAACGCTGGTGCG
TCACTTTCGTCACACGCACCAGGACCTGAAGGCGTACTCGTGTCCGCGAT
GCGGCGGGTTCTATGCGTCGGAGAACACGTTGTGGACGCACATCCGCAAC
GTGCACACCGAGACGCCTCGCAAGTACAAATGTAGCATGTGCGATGCGTC
GTACGATTCGTTCGGAGCCAAAACCAGACACGAGCACGCCACGCACCCCG
AGTGCAAAGGGCTGTATAAGTGCACGTACGAAGGGTGCACGGTTGAGTAC
AAGTTCCCGGCGCACCTAGAGAACCATGCCATCAAGGAGCATCCGGGGTT
TCGCCCGTTCGTGTGCGAGGTGGAGTCGTGTGCGAAGGGGTTTCCAAGCC
TGAACGGCCTCACGCGGCACCGCCGCGAAGTGCACGAGCGCGTGCTGGTG
TACCGCTGCTCATGTGGTAAAACGCACCCGAAGCGGTGCCACCTGAAGAG
GCACCTGCTCAACGTGCACAAAATGTCTCCGGAGCGCGTGAAACAGGAAA
TGAAGAAGCAGCCTCACCCTGGACTGCTGCACCTCGTTCCGCCCGGCCCA
CCGGCGGCGATTGAGTAA
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