Gvermi11959.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11959.t1
Unique NameGvermi11959.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length453
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2720875..2722233 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog290397.Adeh_4292
PFAMsUDPG_MGDP_dh,UDPG_MGDP_dh_C,UDPG_MGDP_dh_N
Max annot lvl28221|Deltaproteobacteria
KEGG rclassRC00291
KEGG koko:K02474,ko:K13015
KEGG ReactionR00421,R06894
KEGG Pathwayko00520,map00520
Evalue5.2e-143
EggNOG OGsCOG0677@1|root,COG0677@2|Bacteria,1MUC6@1224|Proteobacteria,42M4F@68525|delta/epsilon subdivisions,2WKK3@28221|Deltaproteobacteria,2Z320@29|Myxococcales
EC1.1.1.136
DescriptionBelongs to the UDP-glucose GDP-mannose dehydrogenase family
COG categoryM
BRITEko00000,ko00001,ko01000,ko01005
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11959Gvermi11959Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2720875..2722233 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11959.t1.stop1Gvermi11959.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2720875..2720877 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11959.t1.CDS1Gvermi11959.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2720875..2722233 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11959.t1.exon1Gvermi11959.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2720875..2722233 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11959.t1.start1Gvermi11959.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2722231..2722233 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11959.t1Gvermi11959.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2720875..2722233 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11959.t1 ID=Gvermi11959.t1|Name=Gvermi11959.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=453bp
MESNDQTKTTSFDELHALLKSREAHIGVIGLGYVGLPLANLLHNSGFPVI
GYDVDALKIKNLKEGLSYISHMEPDVALKLSRSKKFIPTTEIHKLELCEV
IIICLPTPVGPHDEPDMSYVFSTASHIAKLIKSKTLVVLESTTYPGATDT
DLVDILSTSDLKLGEDLFVAFSPEREDPANAVYKTHIIPKLVGGVDHKSS
ILVEQLYKSGGFQKPIRVSSARVAECAKLLENTYRAVNIALVNELKLVFE
SMDVDIWEVLDAAGTKPFGFQRFDPGPGIGGHCIPIDPFYLTWKAKETGA
PCSFIELAAKTNARMPLRVVKRTQDALNQDKKCANGSLILLLGIAYKPNV
DDIREAPSLVIWENLLNLGAQVEYHDPCVPVVCQTRKHAELSMKESVSQA
DLEARLHKYDAIILITHHDCFDTYAFLEGFQGIVVDTRNRVPKHLGLRIS
PA*
back to top

spliced messenger RNA

>Gvermi11959.t1 ID=Gvermi11959.t1|Name=Gvermi11959.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1359bp|location=Sequence derived from alignment at ScGOVlb_3404:2720875..2722233- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTCAAACGATCAAACCAAAACAACATCTTTTGATGAGCTTCATGC
TCTCCTGAAATCAAGGGAGGCACACATCGGAGTCATCGGATTAGGTTACG
TTGGCCTTCCTCTCGCTAACCTTCTTCACAATTCGGGCTTCCCAGTAATT
GGGTACGATGTTGATGCGCTCAAGATTAAGAATCTTAAAGAAGGTTTATC
ATATATAAGTCATATGGAACCAGATGTAGCTTTGAAACTGTCCCGTTCCA
AAAAGTTTATCCCAACCACAGAGATTCACAAACTTGAGCTTTGCGAAGTC
ATCATTATCTGCTTACCCACACCAGTCGGCCCTCATGACGAGCCTGACAT
GTCCTATGTTTTTTCAACTGCATCACACATAGCAAAGTTAATCAAATCCA
AAACTCTCGTGGTTCTGGAGTCCACGACGTACCCAGGAGCAACAGACACG
GACTTGGTTGATATATTGTCAACATCGGATCTTAAGCTCGGGGAAGACCT
TTTTGTTGCATTCTCTCCTGAACGAGAAGATCCGGCAAACGCAGTCTACA
AGACCCATATTATTCCAAAACTCGTGGGTGGAGTTGACCACAAGTCGTCC
ATTTTGGTGGAACAGTTGTACAAGAGTGGAGGTTTCCAGAAGCCCATTCG
CGTATCATCTGCAAGGGTAGCAGAGTGTGCTAAGCTCTTGGAAAACACAT
ATCGAGCAGTCAACATTGCTTTAGTGAATGAATTAAAACTCGTGTTTGAA
AGTATGGATGTTGATATTTGGGAAGTGCTAGATGCAGCTGGAACGAAACC
TTTCGGCTTTCAGCGATTTGACCCTGGACCTGGCATTGGAGGGCACTGCA
TCCCGATCGATCCATTTTATCTCACGTGGAAAGCGAAAGAAACAGGTGCC
CCATGCAGTTTCATAGAACTTGCCGCGAAAACCAACGCTCGAATGCCGTT
AAGAGTAGTGAAGCGCACACAAGACGCCCTTAATCAGGATAAGAAGTGTG
CAAATGGAAGCCTGATTCTGCTGTTAGGTATCGCCTACAAGCCTAACGTG
GACGACATTCGAGAAGCACCATCTCTCGTCATCTGGGAAAACTTGCTGAA
CTTAGGAGCTCAAGTGGAGTACCACGATCCGTGTGTTCCAGTTGTCTGTC
AAACTCGGAAGCACGCTGAATTGTCAATGAAGGAAAGTGTGTCACAAGCG
GATCTAGAGGCAAGACTCCACAAATATGATGCAATTATATTGATAACGCA
TCACGATTGCTTCGATACGTACGCTTTTTTGGAGGGATTTCAAGGCATCG
TTGTCGATACGCGCAATCGTGTTCCAAAGCACTTGGGCTTAAGGATTTCA
CCAGCATAA
back to top

protein sequence of Gvermi11959.t1

>Gvermi11959.t1 ID=Gvermi11959.t1|Name=Gvermi11959.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=453bp
MESNDQTKTTSFDELHALLKSREAHIGVIGLGYVGLPLANLLHNSGFPVI
GYDVDALKIKNLKEGLSYISHMEPDVALKLSRSKKFIPTTEIHKLELCEV
IIICLPTPVGPHDEPDMSYVFSTASHIAKLIKSKTLVVLESTTYPGATDT
DLVDILSTSDLKLGEDLFVAFSPEREDPANAVYKTHIIPKLVGGVDHKSS
ILVEQLYKSGGFQKPIRVSSARVAECAKLLENTYRAVNIALVNELKLVFE
SMDVDIWEVLDAAGTKPFGFQRFDPGPGIGGHCIPIDPFYLTWKAKETGA
PCSFIELAAKTNARMPLRVVKRTQDALNQDKKCANGSLILLLGIAYKPNV
DDIREAPSLVIWENLLNLGAQVEYHDPCVPVVCQTRKHAELSMKESVSQA
DLEARLHKYDAIILITHHDCFDTYAFLEGFQGIVVDTRNRVPKHLGLRIS
PA*
back to top

mRNA from alignment at ScGOVlb_3404:2720875..2722233-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11959.t1 ID=Gvermi11959.t1|Name=Gvermi11959.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1359bp|location=Sequence derived from alignment at ScGOVlb_3404:2720875..2722233- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGTCAAACGATCAAACCAAAACAACATCTTTTGATGAGCTTCATGC
TCTCCTGAAATCAAGGGAGGCACACATCGGAGTCATCGGATTAGGTTACG
TTGGCCTTCCTCTCGCTAACCTTCTTCACAATTCGGGCTTCCCAGTAATT
GGGTACGATGTTGATGCGCTCAAGATTAAGAATCTTAAAGAAGGTTTATC
ATATATAAGTCATATGGAACCAGATGTAGCTTTGAAACTGTCCCGTTCCA
AAAAGTTTATCCCAACCACAGAGATTCACAAACTTGAGCTTTGCGAAGTC
ATCATTATCTGCTTACCCACACCAGTCGGCCCTCATGACGAGCCTGACAT
GTCCTATGTTTTTTCAACTGCATCACACATAGCAAAGTTAATCAAATCCA
AAACTCTCGTGGTTCTGGAGTCCACGACGTACCCAGGAGCAACAGACACG
GACTTGGTTGATATATTGTCAACATCGGATCTTAAGCTCGGGGAAGACCT
TTTTGTTGCATTCTCTCCTGAACGAGAAGATCCGGCAAACGCAGTCTACA
AGACCCATATTATTCCAAAACTCGTGGGTGGAGTTGACCACAAGTCGTCC
ATTTTGGTGGAACAGTTGTACAAGAGTGGAGGTTTCCAGAAGCCCATTCG
CGTATCATCTGCAAGGGTAGCAGAGTGTGCTAAGCTCTTGGAAAACACAT
ATCGAGCAGTCAACATTGCTTTAGTGAATGAATTAAAACTCGTGTTTGAA
AGTATGGATGTTGATATTTGGGAAGTGCTAGATGCAGCTGGAACGAAACC
TTTCGGCTTTCAGCGATTTGACCCTGGACCTGGCATTGGAGGGCACTGCA
TCCCGATCGATCCATTTTATCTCACGTGGAAAGCGAAAGAAACAGGTGCC
CCATGCAGTTTCATAGAACTTGCCGCGAAAACCAACGCTCGAATGCCGTT
AAGAGTAGTGAAGCGCACACAAGACGCCCTTAATCAGGATAAGAAGTGTG
CAAATGGAAGCCTGATTCTGCTGTTAGGTATCGCCTACAAGCCTAACGTG
GACGACATTCGAGAAGCACCATCTCTCGTCATCTGGGAAAACTTGCTGAA
CTTAGGAGCTCAAGTGGAGTACCACGATCCGTGTGTTCCAGTTGTCTGTC
AAACTCGGAAGCACGCTGAATTGTCAATGAAGGAAAGTGTGTCACAAGCG
GATCTAGAGGCAAGACTCCACAAATATGATGCAATTATATTGATAACGCA
TCACGATTGCTTCGATACGTACGCTTTTTTGGAGGGATTTCAAGGCATCG
TTGTCGATACGCGCAATCGTGTTCCAAAGCACTTGGGCTTAAGGATTTCA
CCAGCATAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:2720875..2722233-

>Gvermi11959.t1 ID=Gvermi11959.t1|Name=Gvermi11959.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1359bp|location=Sequence derived from alignment at ScGOVlb_3404:2720875..2722233- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGTCAAACGATCAAACCAAAACAACATCTTTTGATGAGCTTCATGC
TCTCCTGAAATCAAGGGAGGCACACATCGGAGTCATCGGATTAGGTTACG
TTGGCCTTCCTCTCGCTAACCTTCTTCACAATTCGGGCTTCCCAGTAATT
GGGTACGATGTTGATGCGCTCAAGATTAAGAATCTTAAAGAAGGTTTATC
ATATATAAGTCATATGGAACCAGATGTAGCTTTGAAACTGTCCCGTTCCA
AAAAGTTTATCCCAACCACAGAGATTCACAAACTTGAGCTTTGCGAAGTC
ATCATTATCTGCTTACCCACACCAGTCGGCCCTCATGACGAGCCTGACAT
GTCCTATGTTTTTTCAACTGCATCACACATAGCAAAGTTAATCAAATCCA
AAACTCTCGTGGTTCTGGAGTCCACGACGTACCCAGGAGCAACAGACACG
GACTTGGTTGATATATTGTCAACATCGGATCTTAAGCTCGGGGAAGACCT
TTTTGTTGCATTCTCTCCTGAACGAGAAGATCCGGCAAACGCAGTCTACA
AGACCCATATTATTCCAAAACTCGTGGGTGGAGTTGACCACAAGTCGTCC
ATTTTGGTGGAACAGTTGTACAAGAGTGGAGGTTTCCAGAAGCCCATTCG
CGTATCATCTGCAAGGGTAGCAGAGTGTGCTAAGCTCTTGGAAAACACAT
ATCGAGCAGTCAACATTGCTTTAGTGAATGAATTAAAACTCGTGTTTGAA
AGTATGGATGTTGATATTTGGGAAGTGCTAGATGCAGCTGGAACGAAACC
TTTCGGCTTTCAGCGATTTGACCCTGGACCTGGCATTGGAGGGCACTGCA
TCCCGATCGATCCATTTTATCTCACGTGGAAAGCGAAAGAAACAGGTGCC
CCATGCAGTTTCATAGAACTTGCCGCGAAAACCAACGCTCGAATGCCGTT
AAGAGTAGTGAAGCGCACACAAGACGCCCTTAATCAGGATAAGAAGTGTG
CAAATGGAAGCCTGATTCTGCTGTTAGGTATCGCCTACAAGCCTAACGTG
GACGACATTCGAGAAGCACCATCTCTCGTCATCTGGGAAAACTTGCTGAA
CTTAGGAGCTCAAGTGGAGTACCACGATCCGTGTGTTCCAGTTGTCTGTC
AAACTCGGAAGCACGCTGAATTGTCAATGAAGGAAAGTGTGTCACAAGCG
GATCTAGAGGCAAGACTCCACAAATATGATGCAATTATATTGATAACGCA
TCACGATTGCTTCGATACGTACGCTTTTTTGGAGGGATTTCAAGGCATCG
TTGTCGATACGCGCAATCGTGTTCCAAAGCACTTGGGCTTAAGGATTTCA
CCAGCATAA
back to top