Gvermi11954.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11954.t1
Unique NameGvermi11954.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length138
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2711171..2711688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog38833.XP_003059645.1
Preferred nameRPS17
PFAMsRibosomal_S17e
Max annot lvl3041|Chlorophyta
KEGG koko:K02962
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Evalue2e-59
EggNOG OGsCOG1383@1|root,KOG0187@2759|Eukaryota,37UJA@33090|Viridiplantae,34HSI@3041|Chlorophyta
DescriptionRibosomal protein S17
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11954Gvermi11954Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2711171..2711688 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11954.t1Gvermi11954.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2711171..2711688 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11954.t1.CDS1Gvermi11954.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2711171..2711173 +
Gvermi11954.t1.CDS2Gvermi11954.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2711278..2711688 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11954.t1.exon1Gvermi11954.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2711171..2711173 +
Gvermi11954.t1.exon2Gvermi11954.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2711278..2711688 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11954.t1.start1Gvermi11954.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2711171..2711173 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11954.t1.intron1Gvermi11954.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 2711174..2711277 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11954.t1.stop1Gvermi11954.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2711686..2711688 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11954.t1 ID=Gvermi11954.t1|Name=Gvermi11954.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=138bp
MGRVRTKTVKKSARQVIEKYYSRLTLDFQTNKRICDEVAIIPSKRLRNKV
AGFVTHLMTRIQKGPVRGISLKLQEEERERRMDFVPEVSAIDLEVIEVDG
ETREMLKDLDLAKLPGLVLQTPQGTGGRRSRYDRDRR*
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spliced messenger RNA

>Gvermi11954.t1 ID=Gvermi11954.t1|Name=Gvermi11954.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=414bp|location=Sequence derived from alignment at ScGOVlb_3404:2711171..2711688+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCGAGTTCGCACCAAGACCGTCAAGAAATCCGCCCGCCAGGTTAT
CGAGAAGTACTATTCTCGCCTCACTCTGGACTTCCAGACTAATAAGAGAA
TCTGCGATGAAGTTGCCATCATTCCCTCGAAACGCCTGCGAAATAAGGTT
GCAGGATTTGTCACTCATCTCATGACCAGGATCCAGAAGGGACCTGTCCG
TGGCATCTCCCTCAAACTCCAGGAAGAAGAAAGAGAGCGTCGGATGGACT
TCGTCCCGGAAGTCTCTGCTATTGACCTTGAGGTCATTGAGGTGGATGGT
GAGACTCGCGAAATGCTCAAGGATCTCGACTTGGCCAAGCTCCCTGGACT
CGTCTTGCAGACACCTCAGGGTACTGGCGGTCGTCGCTCGCGGTACGACA
GGGACCGACGCTGA
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protein sequence of Gvermi11954.t1

>Gvermi11954.t1 ID=Gvermi11954.t1|Name=Gvermi11954.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=138bp
MGRVRTKTVKKSARQVIEKYYSRLTLDFQTNKRICDEVAIIPSKRLRNKV
AGFVTHLMTRIQKGPVRGISLKLQEEERERRMDFVPEVSAIDLEVIEVDG
ETREMLKDLDLAKLPGLVLQTPQGTGGRRSRYDRDRR*
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mRNA from alignment at ScGOVlb_3404:2711171..2711688+

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11954.t1 ID=Gvermi11954.t1|Name=Gvermi11954.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=518bp|location=Sequence derived from alignment at ScGOVlb_3404:2711171..2711688+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTACGTGTTGAGTTCGATTTGTTGAAATTGTGCGACGCTTTTGGCGT
TGAAGCGCAACACTCTTTTTTTCTAACGAGTTTGCTCTTTCATGCTATAT
TCAAAAGGGTCGAGTTCGCACCAAGACCGTCAAGAAATCCGCCCGCCAGG
TTATCGAGAAGTACTATTCTCGCCTCACTCTGGACTTCCAGACTAATAAG
AGAATCTGCGATGAAGTTGCCATCATTCCCTCGAAACGCCTGCGAAATAA
GGTTGCAGGATTTGTCACTCATCTCATGACCAGGATCCAGAAGGGACCTG
TCCGTGGCATCTCCCTCAAACTCCAGGAAGAAGAAAGAGAGCGTCGGATG
GACTTCGTCCCGGAAGTCTCTGCTATTGACCTTGAGGTCATTGAGGTGGA
TGGTGAGACTCGCGAAATGCTCAAGGATCTCGACTTGGCCAAGCTCCCTG
GACTCGTCTTGCAGACACCTCAGGGTACTGGCGGTCGTCGCTCGCGGTAC
GACAGGGACCGACGCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2711171..2711688+

>Gvermi11954.t1 ID=Gvermi11954.t1|Name=Gvermi11954.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=414bp|location=Sequence derived from alignment at ScGOVlb_3404:2711171..2711688+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTCGAGTTCGCACCAAGACCGTCAAGAAATCCGCCCGCCAGGTTAT
CGAGAAGTACTATTCTCGCCTCACTCTGGACTTCCAGACTAATAAGAGAA
TCTGCGATGAAGTTGCCATCATTCCCTCGAAACGCCTGCGAAATAAGGTT
GCAGGATTTGTCACTCATCTCATGACCAGGATCCAGAAGGGACCTGTCCG
TGGCATCTCCCTCAAACTCCAGGAAGAAGAAAGAGAGCGTCGGATGGACT
TCGTCCCGGAAGTCTCTGCTATTGACCTTGAGGTCATTGAGGTGGATGGT
GAGACTCGCGAAATGCTCAAGGATCTCGACTTGGCCAAGCTCCCTGGACT
CGTCTTGCAGACACCTCAGGGTACTGGCGGTCGTCGCTCGCGGTACGACA
GGGACCGACGCTGA
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