Gvermi11953.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11953.t1
Unique NameGvermi11953.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length183
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2709372..2710388 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog161934.XP_010666818.1
PFAMsMetallophos_2
Max annot lvl35493|Streptophyta
KEGG koko:K18467
KEGG Pathwayko04144,map04144
Evalue1.03e-60
EggNOG OGsCOG0622@1|root,KOG3325@2759|Eukaryota,37MQ7@33090|Viridiplantae,3GEUW@35493|Streptophyta
DescriptionBelongs to the VPS29 family
COG categoryU
BRITEko00000,ko00001,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11953Gvermi11953Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2709372..2710388 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11953.t1.stop1Gvermi11953.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2709372..2709374 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11953.t1.CDS1Gvermi11953.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2709372..2709404 -
Gvermi11953.t1.CDS2Gvermi11953.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2709492..2709602 -
Gvermi11953.t1.CDS3Gvermi11953.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2709727..2709820 -
Gvermi11953.t1.CDS4Gvermi11953.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2709915..2710027 -
Gvermi11953.t1.CDS5Gvermi11953.t1.CDS5Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2710114..2710305 -
Gvermi11953.t1.CDS6Gvermi11953.t1.CDS6Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2710383..2710388 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11953.t1.exon1Gvermi11953.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2709372..2709404 -
Gvermi11953.t1.exon2Gvermi11953.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2709492..2709602 -
Gvermi11953.t1.exon3Gvermi11953.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2709727..2709820 -
Gvermi11953.t1.exon4Gvermi11953.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2709915..2710027 -
Gvermi11953.t1.exon5Gvermi11953.t1.exon5Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2710114..2710305 -
Gvermi11953.t1.exon6Gvermi11953.t1.exon6Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2710383..2710388 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11953.t1.intron1Gvermi11953.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 2709405..2709491 -
Gvermi11953.t1.intron2Gvermi11953.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 2709603..2709726 -
Gvermi11953.t1.intron3Gvermi11953.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 2709821..2709914 -
Gvermi11953.t1.intron4Gvermi11953.t1.intron4Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 2710028..2710113 -
Gvermi11953.t1.intron5Gvermi11953.t1.intron5Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 2710306..2710382 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11953.t1.start1Gvermi11953.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2710386..2710388 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11953.t1Gvermi11953.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2709372..2710388 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11953.t1 ID=Gvermi11953.t1|Name=Gvermi11953.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=183bp
MVLVLAIGDFHVPQRSPGLPKRFRTLLTPGKIQFILCTGNLCSAEIDQYL
HSLGPEVHIVAGDMDSTMYPEKAIVNVGNLSFGVCHGHQVIPYGSKSGAE
ALRREMGVDVLITGSSHRLNLWRAQDGGLLINPGSATGAYTTVDQTLSPP
SFILMDVQGTKIVTYSYVLDEVDGLLIDRVNF*
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spliced messenger RNA

>Gvermi11953.t1 ID=Gvermi11953.t1|Name=Gvermi11953.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=549bp|location=Sequence derived from alignment at ScGOVlb_3404:2709372..2710388- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCTTAGTTCTAGCAATTGGGGACTTTCATGTTCCCCAAAGGTCACC
AGGTTTGCCAAAACGCTTTAGAACATTGCTAACACCTGGCAAAATACAAT
TCATACTTTGTACGGGGAATCTATGCAGCGCAGAAATCGATCAATACCTA
CATTCCCTAGGACCTGAAGTACATATAGTTGCAGGAGACATGGATTCGAC
CATGTATCCGGAGAAGGCCATTGTCAATGTTGGTAATCTTTCTTTTGGTG
TCTGCCATGGCCATCAAGTCATTCCCTACGGTTCAAAGTCAGGGGCAGAG
GCACTAAGAAGAGAAATGGGCGTAGATGTGCTCATAACTGGGAGTTCACA
TCGACTTAACTTATGGCGAGCCCAAGATGGCGGGCTTCTTATCAATCCTG
GTTCGGCCACTGGTGCGTATACCACGGTCGATCAAACGCTTTCACCGCCA
AGTTTTATTTTAATGGATGTGCAAGGAACCAAGATCGTAACTTATTCGTA
CGTTCTTGATGAAGTGGATGGTTTGTTAATTGACCGCGTCAATTTTTGA
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protein sequence of Gvermi11953.t1

>Gvermi11953.t1 ID=Gvermi11953.t1|Name=Gvermi11953.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=183bp
MVLVLAIGDFHVPQRSPGLPKRFRTLLTPGKIQFILCTGNLCSAEIDQYL
HSLGPEVHIVAGDMDSTMYPEKAIVNVGNLSFGVCHGHQVIPYGSKSGAE
ALRREMGVDVLITGSSHRLNLWRAQDGGLLINPGSATGAYTTVDQTLSPP
SFILMDVQGTKIVTYSYVLDEVDGLLIDRVNF*
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mRNA from alignment at ScGOVlb_3404:2709372..2710388-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11953.t1 ID=Gvermi11953.t1|Name=Gvermi11953.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1017bp|location=Sequence derived from alignment at ScGOVlb_3404:2709372..2710388- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCGTATGTTCATTCTATCGAGTTCTAGATTTTTGCGAGTGTCGGAA
GGAGGTTCTAACTTTATATATTGGACAAAGCAGTTAGTTCTAGCAATTGG
GGACTTTCATGTTCCCCAAAGGTCACCAGGTTTGCCAAAACGCTTTAGAA
CATTGCTAACACCTGGCAAAATACAATTCATACTTTGTACGGGGAATCTA
TGCAGCGCAGAAATCGATCAATACCTACATTCCCTAGGACCTGAAGTACA
TATAGTTGCAGGAGACATGGATTCGGTACGCCACTTTTCTTGTTACTTCA
TTGCTGCAAGTTAGTTCATCAAGGTCTCTAACCATTTGATATTGAATTTG
AGCGTTTTTAGACCATGTATCCGGAGAAGGCCATTGTCAATGTTGGTAAT
CTTTCTTTTGGTGTCTGCCATGGCCATCAAGTCATTCCCTACGGTTCAAA
GTCAGGGGCAGAGGCACTAAGAAGGTATCTACCACTAGAATTCTACCGCT
AATCTGCAATATTTTCTAACATGTTCTTGTGGCCAATTGAATGATTCGGT
GGGTTCCATGAGGTACAGAGAAATGGGCGTAGATGTGCTCATAACTGGGA
GTTCACATCGACTTAACTTATGGCGAGCCCAAGATGGCGGGCTTCTTATC
AATCCTGGTTCGGTACGCTGTTTGTCTATAACTCAAACATACAAAATATC
TCAAAATGGGACTTTTCCTGTTTGTGCTTGTTTCACTTTACCACAGGAAC
TGATTCTAACTGTTCTGTTTCTTCGTTTTTGTGTAGGCCACTGGTGCGTA
TACCACGGTCGATCAAACGCTTTCACCGCCAAGTTTTATTTTAATGGATG
TGCAAGGAACCAAGATCGTAACTTATTCGTACGTTCTTGATGAAGTGGTA
TGTTGTTTGTTTACAAAACTGTGCTTGTTTTTGCTCCCCTCCTAACTCTC
ATTTATCTGCATGTAAACATTGTATTTTATCCAGGATGGTTTGTTAATTG
ACCGCGTCAATTTTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2709372..2710388-

>Gvermi11953.t1 ID=Gvermi11953.t1|Name=Gvermi11953.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=549bp|location=Sequence derived from alignment at ScGOVlb_3404:2709372..2710388- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCTTAGTTCTAGCAATTGGGGACTTTCATGTTCCCCAAAGGTCACC
AGGTTTGCCAAAACGCTTTAGAACATTGCTAACACCTGGCAAAATACAAT
TCATACTTTGTACGGGGAATCTATGCAGCGCAGAAATCGATCAATACCTA
CATTCCCTAGGACCTGAAGTACATATAGTTGCAGGAGACATGGATTCGAC
CATGTATCCGGAGAAGGCCATTGTCAATGTTGGTAATCTTTCTTTTGGTG
TCTGCCATGGCCATCAAGTCATTCCCTACGGTTCAAAGTCAGGGGCAGAG
GCACTAAGAAGAGAAATGGGCGTAGATGTGCTCATAACTGGGAGTTCACA
TCGACTTAACTTATGGCGAGCCCAAGATGGCGGGCTTCTTATCAATCCTG
GTTCGGCCACTGGTGCGTATACCACGGTCGATCAAACGCTTTCACCGCCA
AGTTTTATTTTAATGGATGTGCAAGGAACCAAGATCGTAACTTATTCGTA
CGTTCTTGATGAAGTGGATGGTTTGTTAATTGACCGCGTCAATTTTTGA
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