Gvermi11949.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi11949.t1
Unique Name	Gvermi11949.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	435

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:2695554..2696858 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3656.XP_008447342.1
PFAMs	AAA
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K03062
KEGG Pathway	ko03050,ko05165,ko05169,ko05203,map03050,map05165,map05169,map05203
KEGG Module	M00341
GOs	GO:0000502,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005838,GO:0006355,GO:0006357,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0008134,GO:0008150,GO:0008152,GO:0008540,GO:0009056,GO:0009057,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017025,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0019941,GO:0022624,GO:0030162,GO:0030163,GO:0030433,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031334,GO:0031595,GO:0031597,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032991,GO:0033554,GO:0034976,GO:0036402,GO:0036503,GO:0042176,GO:0042221,GO:0042623,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043632,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045732,GO:0045862,GO:0045893,GO:0045898,GO:0045899,GO:0045935,GO:0045944,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051603,GO:0051716,GO:0060255,GO:0060260,GO:0060261,GO:0061136,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901800,GO:1902494,GO:1902680,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903506,GO:1903508,GO:1905368,GO:1905369,GO:2000112,GO:2000142,GO:2000144,GO:2001141
Evalue	7.98e-252
EggNOG OGs	COG0554@1\|root,KOG0726@2759\|Eukaryota,37NGE@33090\|Viridiplantae,3G8FW@35493\|Streptophyta,4JRR8@91835\|fabids
Description	26S proteasome regulatory subunit 4 homolog
COG category	O
BRITE	ko00000,ko00001,ko00002,ko03051

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi11949	Gvermi11949	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 2695554..2696858 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11949.t1.start1	Gvermi11949.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 2695554..2695556 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11949.t1.CDS1	Gvermi11949.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 2695554..2696858 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11949.t1.exon1	Gvermi11949.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 2695554..2696858 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11949.t1.stop1	Gvermi11949.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 2696856..2696858 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11949.t1	Gvermi11949.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 2695554..2696858 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:2695554..2696858+
coding sequence from alignment at ScGOVlb_3404:2695554..2696858+

mRNA sequence

>Gvermi11949.t1 ID=Gvermi11949.t1|Name=Gvermi11949.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=435bp
MPPGGPPGGKQGDKKHKKYEPPPAPTRIGRKKKKRGPEVAAKLPTITPNA
KCRLRLIKLERVKDYLLMEEEFVTNQERYKPREERTEEDRLKVEDIRGTP
MSVGTLEEIIDDDHAIVSSSVGPENYVYITSFVDKDQLEPGSSVLLHQKV
LSVVGMLADDADPMVSVMKVDKAPLESYADIGGLENQIQEIKEAVELPLT
HPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI
QKYLGDGPKLVRELFRVAEDMAPSIVFIDEIDAVGTKRYDTTSGGEREIQ
RTMLELLNQLDGFDSRGDVKVLLATNRIETLDPALLRPGRIDRKIEFPLP
DEKTKRRIFAIHTGRMTLAEDVHLEEFVMSKDELSGADIKAICTEAGLMA
LRERRMQVTHADFKKAKENVMYKKNQGVPEGLYL*

spliced messenger RNA

>Gvermi11949.t1 ID=Gvermi11949.t1|Name=Gvermi11949.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1305bp|location=Sequence derived from alignment at ScGOVlb_3404:2695554..2696858+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCCGGGCGGTCCGCCTGGTGGGAAGCAAGGAGACAAGAAGCACAA
GAAATATGAGCCTCCTCCAGCACCGACCCGAATTGGACGAAAGAAAAAGA
AGCGCGGACCGGAAGTCGCAGCGAAATTACCAACGATCACGCCAAATGCG
AAGTGCAGATTGCGTCTGATTAAACTTGAACGCGTGAAGGACTATCTTTT
GATGGAAGAAGAGTTTGTAACGAATCAAGAACGGTACAAACCTCGCGAGG
AGCGCACGGAAGAGGATCGCCTGAAAGTTGAAGATATTCGTGGAACGCCT
ATGAGTGTTGGAACTCTAGAGGAAATTATTGACGATGATCACGCCATTGT
GTCTTCTTCCGTGGGACCGGAGAATTATGTTTACATCACTTCGTTTGTTG
ACAAAGACCAGTTAGAACCTGGGAGCTCTGTGCTCCTGCACCAAAAAGTC
CTCAGTGTCGTCGGCATGCTAGCAGATGATGCAGATCCAATGGTTAGCGT
TATGAAAGTTGATAAGGCTCCCCTTGAGAGCTACGCCGATATAGGTGGAC
TGGAGAACCAGATCCAGGAAATCAAGGAGGCAGTGGAATTACCCCTCACA
CATCCAGAACTCTACGAAGACATTGGTATCAAGCCACCAAAGGGCGTTAT
CCTCTATGGAGAACCCGGCACTGGAAAGACGCTGTTGGCAAAAGCTGTCG
CCAACAGCACATCGGCCACGTTTCTCAGGGTTGTCGGGTCGGAACTGATC
CAAAAGTATCTTGGAGATGGCCCTAAGCTTGTCCGGGAGTTATTCCGTGT
CGCCGAAGATATGGCACCTTCAATTGTTTTCATTGACGAAATAGATGCTG
TTGGTACTAAACGTTACGATACTACATCTGGCGGCGAGCGTGAAATTCAG
CGAACCATGTTGGAACTTCTCAATCAGCTCGATGGGTTCGATAGTCGAGG
TGATGTCAAAGTTCTGCTAGCAACGAATCGAATCGAAACTCTAGATCCGG
CGCTGCTGCGTCCTGGCCGTATCGATCGAAAGATAGAGTTTCCTCTCCCA
GACGAGAAAACGAAGCGCAGGATCTTTGCCATCCATACTGGGCGGATGAC
ATTGGCCGAGGATGTGCACCTGGAAGAGTTCGTCATGAGCAAGGATGAGT
TAAGCGGTGCTGATATAAAGGCTATTTGCACAGAGGCTGGTCTCATGGCT
CTGCGAGAACGAAGAATGCAGGTGACCCATGCGGATTTCAAGAAAGCTAA
AGAGAACGTAATGTACAAGAAGAATCAAGGTGTCCCAGAAGGGCTTTACT
TGTGA

protein sequence of Gvermi11949.t1

>Gvermi11949.t1 ID=Gvermi11949.t1|Name=Gvermi11949.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=435bp
MPPGGPPGGKQGDKKHKKYEPPPAPTRIGRKKKKRGPEVAAKLPTITPNA
KCRLRLIKLERVKDYLLMEEEFVTNQERYKPREERTEEDRLKVEDIRGTP
MSVGTLEEIIDDDHAIVSSSVGPENYVYITSFVDKDQLEPGSSVLLHQKV
LSVVGMLADDADPMVSVMKVDKAPLESYADIGGLENQIQEIKEAVELPLT
HPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI
QKYLGDGPKLVRELFRVAEDMAPSIVFIDEIDAVGTKRYDTTSGGEREIQ
RTMLELLNQLDGFDSRGDVKVLLATNRIETLDPALLRPGRIDRKIEFPLP
DEKTKRRIFAIHTGRMTLAEDVHLEEFVMSKDELSGADIKAICTEAGLMA
LRERRMQVTHADFKKAKENVMYKKNQGVPEGLYL*

mRNA from alignment at ScGOVlb_3404:2695554..2696858+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi11949.t1 ID=Gvermi11949.t1|Name=Gvermi11949.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1305bp|location=Sequence derived from alignment at ScGOVlb_3404:2695554..2696858+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTCCGGGCGGTCCGCCTGGTGGGAAGCAAGGAGACAAGAAGCACAA
GAAATATGAGCCTCCTCCAGCACCGACCCGAATTGGACGAAAGAAAAAGA
AGCGCGGACCGGAAGTCGCAGCGAAATTACCAACGATCACGCCAAATGCG
AAGTGCAGATTGCGTCTGATTAAACTTGAACGCGTGAAGGACTATCTTTT
GATGGAAGAAGAGTTTGTAACGAATCAAGAACGGTACAAACCTCGCGAGG
AGCGCACGGAAGAGGATCGCCTGAAAGTTGAAGATATTCGTGGAACGCCT
ATGAGTGTTGGAACTCTAGAGGAAATTATTGACGATGATCACGCCATTGT
GTCTTCTTCCGTGGGACCGGAGAATTATGTTTACATCACTTCGTTTGTTG
ACAAAGACCAGTTAGAACCTGGGAGCTCTGTGCTCCTGCACCAAAAAGTC
CTCAGTGTCGTCGGCATGCTAGCAGATGATGCAGATCCAATGGTTAGCGT
TATGAAAGTTGATAAGGCTCCCCTTGAGAGCTACGCCGATATAGGTGGAC
TGGAGAACCAGATCCAGGAAATCAAGGAGGCAGTGGAATTACCCCTCACA
CATCCAGAACTCTACGAAGACATTGGTATCAAGCCACCAAAGGGCGTTAT
CCTCTATGGAGAACCCGGCACTGGAAAGACGCTGTTGGCAAAAGCTGTCG
CCAACAGCACATCGGCCACGTTTCTCAGGGTTGTCGGGTCGGAACTGATC
CAAAAGTATCTTGGAGATGGCCCTAAGCTTGTCCGGGAGTTATTCCGTGT
CGCCGAAGATATGGCACCTTCAATTGTTTTCATTGACGAAATAGATGCTG
TTGGTACTAAACGTTACGATACTACATCTGGCGGCGAGCGTGAAATTCAG
CGAACCATGTTGGAACTTCTCAATCAGCTCGATGGGTTCGATAGTCGAGG
TGATGTCAAAGTTCTGCTAGCAACGAATCGAATCGAAACTCTAGATCCGG
CGCTGCTGCGTCCTGGCCGTATCGATCGAAAGATAGAGTTTCCTCTCCCA
GACGAGAAAACGAAGCGCAGGATCTTTGCCATCCATACTGGGCGGATGAC
ATTGGCCGAGGATGTGCACCTGGAAGAGTTCGTCATGAGCAAGGATGAGT
TAAGCGGTGCTGATATAAAGGCTATTTGCACAGAGGCTGGTCTCATGGCT
CTGCGAGAACGAAGAATGCAGGTGACCCATGCGGATTTCAAGAAAGCTAA
AGAGAACGTAATGTACAAGAAGAATCAAGGTGTCCCAGAAGGGCTTTACT
TGTGA

Coding sequence (CDS) from alignment at ScGOVlb_3404:2695554..2696858+

>Gvermi11949.t1 ID=Gvermi11949.t1|Name=Gvermi11949.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1305bp|location=Sequence derived from alignment at ScGOVlb_3404:2695554..2696858+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTCCGGGCGGTCCGCCTGGTGGGAAGCAAGGAGACAAGAAGCACAA
GAAATATGAGCCTCCTCCAGCACCGACCCGAATTGGACGAAAGAAAAAGA
AGCGCGGACCGGAAGTCGCAGCGAAATTACCAACGATCACGCCAAATGCG
AAGTGCAGATTGCGTCTGATTAAACTTGAACGCGTGAAGGACTATCTTTT
GATGGAAGAAGAGTTTGTAACGAATCAAGAACGGTACAAACCTCGCGAGG
AGCGCACGGAAGAGGATCGCCTGAAAGTTGAAGATATTCGTGGAACGCCT
ATGAGTGTTGGAACTCTAGAGGAAATTATTGACGATGATCACGCCATTGT
GTCTTCTTCCGTGGGACCGGAGAATTATGTTTACATCACTTCGTTTGTTG
ACAAAGACCAGTTAGAACCTGGGAGCTCTGTGCTCCTGCACCAAAAAGTC
CTCAGTGTCGTCGGCATGCTAGCAGATGATGCAGATCCAATGGTTAGCGT
TATGAAAGTTGATAAGGCTCCCCTTGAGAGCTACGCCGATATAGGTGGAC
TGGAGAACCAGATCCAGGAAATCAAGGAGGCAGTGGAATTACCCCTCACA
CATCCAGAACTCTACGAAGACATTGGTATCAAGCCACCAAAGGGCGTTAT
CCTCTATGGAGAACCCGGCACTGGAAAGACGCTGTTGGCAAAAGCTGTCG
CCAACAGCACATCGGCCACGTTTCTCAGGGTTGTCGGGTCGGAACTGATC
CAAAAGTATCTTGGAGATGGCCCTAAGCTTGTCCGGGAGTTATTCCGTGT
CGCCGAAGATATGGCACCTTCAATTGTTTTCATTGACGAAATAGATGCTG
TTGGTACTAAACGTTACGATACTACATCTGGCGGCGAGCGTGAAATTCAG
CGAACCATGTTGGAACTTCTCAATCAGCTCGATGGGTTCGATAGTCGAGG
TGATGTCAAAGTTCTGCTAGCAACGAATCGAATCGAAACTCTAGATCCGG
CGCTGCTGCGTCCTGGCCGTATCGATCGAAAGATAGAGTTTCCTCTCCCA
GACGAGAAAACGAAGCGCAGGATCTTTGCCATCCATACTGGGCGGATGAC
ATTGGCCGAGGATGTGCACCTGGAAGAGTTCGTCATGAGCAAGGATGAGT
TAAGCGGTGCTGATATAAAGGCTATTTGCACAGAGGCTGGTCTCATGGCT
CTGCGAGAACGAAGAATGCAGGTGACCCATGCGGATTTCAAGAAAGCTAA
AGAGAACGTAATGTACAAGAAGAATCAAGGTGTCCCAGAAGGGCTTTACT
TGTGA