Gvermi11947.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi11947.t1
Unique Name	Gvermi11947.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	387

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:2689063..2690223 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMN250CT
PFAMs	SRP54,SRP54_N
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03110
KEGG TC	3.A.5.1,3.A.5.2,3.A.5.7
KEGG Pathway	ko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG Module	M00335
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0016020,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
Evalue	6.11e-99
EggNOG OGs	COG0541@1\|root,KOG0780@2759\|Eukaryota
Description	7S RNA binding
COG category	U
BRITE	ko00000,ko00001,ko00002,ko02044

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi11947	Gvermi11947	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 2689063..2690223 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11947.t1.stop1	Gvermi11947.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 2689063..2689065 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11947.t1.CDS1	Gvermi11947.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 2689063..2690223 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11947.t1.exon1	Gvermi11947.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 2689063..2690223 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11947.t1.start1	Gvermi11947.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 2690221..2690223 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11947.t1	Gvermi11947.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 2689063..2690223 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:2689063..2690223-
coding sequence from alignment at ScGOVlb_3404:2689063..2690223-

mRNA sequence

>Gvermi11947.t1 ID=Gvermi11947.t1|Name=Gvermi11947.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=387bp
MSADEGLGFLPPLSLRGTVVRRPVEFKHKSAKVYRRVGSYHVTRAVFDFV
KKAGEEQKKAFDALRQGKGMEYVRDKVQRDIEQVRKFNSGLAKSREKLAR
DLADVVRGGAIVELDETLEELEEILIMSDLGVDTVEKILEDLRRESRAKR
LQMKEDIKSNLKTSLIGILNGVHHGDLVVADEKPTIYMIIGANGMGKTTT
IGKLATRLRNQGKRVLVAACDTFRAAAVDQLQEWVKRAEVDIVIPRPEQK
SPSGVLYSALERAFKENYDYLIIDTSGRLHTNLNLMGELQKMVRVVEKFR
EGGPDETILVVDASIGRNAVAQAKTWNQDVGVSSLAVTKLDGTARAGFVV
SCVDELKIPVKLVGVGEQVDDLRDFDTELFIDGLIG*

spliced messenger RNA

>Gvermi11947.t1 ID=Gvermi11947.t1|Name=Gvermi11947.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1161bp|location=Sequence derived from alignment at ScGOVlb_3404:2689063..2690223- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGCTGATGAGGGTTTAGGGTTTCTTCCCCCTCTTTCTCTTCGGGG
TACGGTCGTTCGTAGACCTGTGGAATTTAAGCACAAGTCAGCAAAAGTCT
ATAGGCGCGTGGGGTCCTACCATGTAACAAGAGCTGTGTTTGACTTCGTC
AAAAAAGCGGGGGAGGAGCAGAAAAAAGCTTTTGATGCTTTGCGCCAAGG
AAAGGGTATGGAATATGTTCGCGACAAAGTACAAAGAGATATCGAACAGG
TTCGAAAGTTTAACAGTGGACTGGCGAAGTCGAGGGAAAAGCTTGCTCGA
GATCTGGCGGATGTGGTGAGGGGTGGTGCTATAGTAGAGCTCGATGAGAC
CCTGGAGGAATTAGAAGAAATTCTTATTATGTCAGACCTGGGAGTAGATA
CCGTGGAAAAGATACTCGAGGATCTCCGAAGGGAATCTCGCGCAAAACGG
CTCCAGATGAAAGAAGATATTAAGAGCAATTTGAAAACAAGTCTAATCGG
TATCTTAAACGGGGTGCATCACGGAGATCTAGTTGTGGCTGATGAGAAAC
CAACTATTTACATGATCATAGGCGCTAATGGTATGGGGAAAACAACGACC
ATTGGAAAGTTGGCAACGCGTCTTAGAAATCAAGGCAAACGAGTTCTCGT
CGCCGCGTGTGATACGTTCCGCGCTGCAGCTGTTGATCAACTACAGGAAT
GGGTGAAACGAGCCGAAGTAGACATCGTGATACCAAGACCAGAGCAAAAA
AGCCCATCGGGTGTTTTATATAGTGCTCTTGAGCGCGCGTTCAAGGAGAA
TTACGATTATCTCATAATTGACACCAGCGGGAGATTACATACCAATTTGA
ACCTTATGGGTGAACTTCAGAAGATGGTGCGGGTTGTGGAGAAATTCAGG
GAGGGAGGTCCAGACGAGACTATACTAGTGGTGGACGCATCGATTGGAAG
AAATGCAGTAGCACAAGCAAAGACATGGAATCAAGACGTGGGGGTCTCCA
GTTTAGCTGTGACAAAGCTGGATGGGACCGCTCGGGCAGGATTTGTCGTG
TCATGTGTTGATGAGCTGAAGATACCGGTGAAGTTAGTAGGAGTAGGAGA
GCAAGTAGACGACCTTCGTGACTTTGATACGGAGTTGTTTATCGACGGGC
TGATTGGATAG

protein sequence of Gvermi11947.t1

>Gvermi11947.t1 ID=Gvermi11947.t1|Name=Gvermi11947.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=387bp
MSADEGLGFLPPLSLRGTVVRRPVEFKHKSAKVYRRVGSYHVTRAVFDFV
KKAGEEQKKAFDALRQGKGMEYVRDKVQRDIEQVRKFNSGLAKSREKLAR
DLADVVRGGAIVELDETLEELEEILIMSDLGVDTVEKILEDLRRESRAKR
LQMKEDIKSNLKTSLIGILNGVHHGDLVVADEKPTIYMIIGANGMGKTTT
IGKLATRLRNQGKRVLVAACDTFRAAAVDQLQEWVKRAEVDIVIPRPEQK
SPSGVLYSALERAFKENYDYLIIDTSGRLHTNLNLMGELQKMVRVVEKFR
EGGPDETILVVDASIGRNAVAQAKTWNQDVGVSSLAVTKLDGTARAGFVV
SCVDELKIPVKLVGVGEQVDDLRDFDTELFIDGLIG*

mRNA from alignment at ScGOVlb_3404:2689063..2690223-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi11947.t1 ID=Gvermi11947.t1|Name=Gvermi11947.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1161bp|location=Sequence derived from alignment at ScGOVlb_3404:2689063..2690223- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTGCTGATGAGGGTTTAGGGTTTCTTCCCCCTCTTTCTCTTCGGGG
TACGGTCGTTCGTAGACCTGTGGAATTTAAGCACAAGTCAGCAAAAGTCT
ATAGGCGCGTGGGGTCCTACCATGTAACAAGAGCTGTGTTTGACTTCGTC
AAAAAAGCGGGGGAGGAGCAGAAAAAAGCTTTTGATGCTTTGCGCCAAGG
AAAGGGTATGGAATATGTTCGCGACAAAGTACAAAGAGATATCGAACAGG
TTCGAAAGTTTAACAGTGGACTGGCGAAGTCGAGGGAAAAGCTTGCTCGA
GATCTGGCGGATGTGGTGAGGGGTGGTGCTATAGTAGAGCTCGATGAGAC
CCTGGAGGAATTAGAAGAAATTCTTATTATGTCAGACCTGGGAGTAGATA
CCGTGGAAAAGATACTCGAGGATCTCCGAAGGGAATCTCGCGCAAAACGG
CTCCAGATGAAAGAAGATATTAAGAGCAATTTGAAAACAAGTCTAATCGG
TATCTTAAACGGGGTGCATCACGGAGATCTAGTTGTGGCTGATGAGAAAC
CAACTATTTACATGATCATAGGCGCTAATGGTATGGGGAAAACAACGACC
ATTGGAAAGTTGGCAACGCGTCTTAGAAATCAAGGCAAACGAGTTCTCGT
CGCCGCGTGTGATACGTTCCGCGCTGCAGCTGTTGATCAACTACAGGAAT
GGGTGAAACGAGCCGAAGTAGACATCGTGATACCAAGACCAGAGCAAAAA
AGCCCATCGGGTGTTTTATATAGTGCTCTTGAGCGCGCGTTCAAGGAGAA
TTACGATTATCTCATAATTGACACCAGCGGGAGATTACATACCAATTTGA
ACCTTATGGGTGAACTTCAGAAGATGGTGCGGGTTGTGGAGAAATTCAGG
GAGGGAGGTCCAGACGAGACTATACTAGTGGTGGACGCATCGATTGGAAG
AAATGCAGTAGCACAAGCAAAGACATGGAATCAAGACGTGGGGGTCTCCA
GTTTAGCTGTGACAAAGCTGGATGGGACCGCTCGGGCAGGATTTGTCGTG
TCATGTGTTGATGAGCTGAAGATACCGGTGAAGTTAGTAGGAGTAGGAGA
GCAAGTAGACGACCTTCGTGACTTTGATACGGAGTTGTTTATCGACGGGC
TGATTGGATAG

Coding sequence (CDS) from alignment at ScGOVlb_3404:2689063..2690223-

>Gvermi11947.t1 ID=Gvermi11947.t1|Name=Gvermi11947.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1161bp|location=Sequence derived from alignment at ScGOVlb_3404:2689063..2690223- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTGCTGATGAGGGTTTAGGGTTTCTTCCCCCTCTTTCTCTTCGGGG
TACGGTCGTTCGTAGACCTGTGGAATTTAAGCACAAGTCAGCAAAAGTCT
ATAGGCGCGTGGGGTCCTACCATGTAACAAGAGCTGTGTTTGACTTCGTC
AAAAAAGCGGGGGAGGAGCAGAAAAAAGCTTTTGATGCTTTGCGCCAAGG
AAAGGGTATGGAATATGTTCGCGACAAAGTACAAAGAGATATCGAACAGG
TTCGAAAGTTTAACAGTGGACTGGCGAAGTCGAGGGAAAAGCTTGCTCGA
GATCTGGCGGATGTGGTGAGGGGTGGTGCTATAGTAGAGCTCGATGAGAC
CCTGGAGGAATTAGAAGAAATTCTTATTATGTCAGACCTGGGAGTAGATA
CCGTGGAAAAGATACTCGAGGATCTCCGAAGGGAATCTCGCGCAAAACGG
CTCCAGATGAAAGAAGATATTAAGAGCAATTTGAAAACAAGTCTAATCGG
TATCTTAAACGGGGTGCATCACGGAGATCTAGTTGTGGCTGATGAGAAAC
CAACTATTTACATGATCATAGGCGCTAATGGTATGGGGAAAACAACGACC
ATTGGAAAGTTGGCAACGCGTCTTAGAAATCAAGGCAAACGAGTTCTCGT
CGCCGCGTGTGATACGTTCCGCGCTGCAGCTGTTGATCAACTACAGGAAT
GGGTGAAACGAGCCGAAGTAGACATCGTGATACCAAGACCAGAGCAAAAA
AGCCCATCGGGTGTTTTATATAGTGCTCTTGAGCGCGCGTTCAAGGAGAA
TTACGATTATCTCATAATTGACACCAGCGGGAGATTACATACCAATTTGA
ACCTTATGGGTGAACTTCAGAAGATGGTGCGGGTTGTGGAGAAATTCAGG
GAGGGAGGTCCAGACGAGACTATACTAGTGGTGGACGCATCGATTGGAAG
AAATGCAGTAGCACAAGCAAAGACATGGAATCAAGACGTGGGGGTCTCCA
GTTTAGCTGTGACAAAGCTGGATGGGACCGCTCGGGCAGGATTTGTCGTG
TCATGTGTTGATGAGCTGAAGATACCGGTGAAGTTAGTAGGAGTAGGAGA
GCAAGTAGACGACCTTCGTGACTTTGATACGGAGTTGTTTATCGACGGGC
TGATTGGATAG