Gvermi11945.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11945.t1
Unique NameGvermi11945.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length587
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2685280..2687040 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11945Gvermi11945Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2685280..2687040 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11945.t1.stop1Gvermi11945.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2685280..2685282 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11945.t1.CDS1Gvermi11945.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2685280..2687040 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11945.t1.exon1Gvermi11945.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2685280..2687040 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11945.t1.start1Gvermi11945.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2687038..2687040 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11945.t1Gvermi11945.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2685280..2687040 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11945.t1 ID=Gvermi11945.t1|Name=Gvermi11945.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=587bp
MDSLFSSFDNGISFDNVADFEEIMSKTLELGNISTEAIANALQNTLDTRQ
FTCLGEDQGNPSTEHALVPGKTDINSYFTPPSPVSRDASLFALNFESNDH
TAKETTDHQMQVKRNGSQSQQERNNLFTQPDATSRITKELSVNAFARGHP
NQNASEERDMQKPQDHGNVTELENVLASHERELHIPQGCPTAPNQMAANA
DNSGDISLTTGARQTSSLPQPIVLKRNLNYENQEHGLQELFRLLSEPVPP
PNKKRRIGYHCRNAENPELNVQPTDRTLAAPCLANVCREDPPAKNVPWQQ
IPSILKPHIINDAWTEFLRSGLKEVTTCQAPAYEQPAQLVSVDPPAKTPD
DAIPFIENCDKEPALKLSAPLDDSWFLDHNPPPAPNFQGAPSAQPRNDPP
IVAQSETTNPVGSANFSYDTTQPCTVVPQVVPQVEILYPSALGNKPPEAV
RSLLRASANDIVSKIELYWSHFHDYRISAERAGHLLREKSVRFERRKRMG
PEVPAIEKKAIRAQRNRERSQALRRYHKQRMEHLEAVSGQLKVYNSVAKS
LINCLLEEPKSLDLVQEYFKSHECNEELLAYLRESN*
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spliced messenger RNA

>Gvermi11945.t1 ID=Gvermi11945.t1|Name=Gvermi11945.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1761bp|location=Sequence derived from alignment at ScGOVlb_3404:2685280..2687040- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTCACTGTTTTCTTCTTTTGACAACGGGATATCCTTCGACAATGT
TGCCGACTTTGAAGAAATAATGAGCAAGACACTTGAGCTCGGCAATATAT
CCACCGAAGCAATTGCTAATGCCCTTCAGAACACTCTTGATACGAGGCAA
TTCACATGTTTGGGTGAGGACCAAGGCAATCCTTCAACGGAACATGCCCT
GGTTCCGGGAAAAACTGATATCAATTCATACTTTACCCCTCCCAGTCCTG
TTTCTCGCGATGCATCCCTTTTTGCACTGAACTTTGAATCAAACGACCAT
ACCGCTAAAGAAACTACTGACCATCAAATGCAAGTTAAGCGGAATGGTAG
TCAGTCGCAACAAGAGAGAAACAACTTATTTACTCAACCAGATGCCACTT
CTCGCATTACAAAGGAACTTTCCGTTAACGCGTTTGCCAGGGGGCATCCT
AATCAAAATGCTTCTGAAGAGCGAGATATGCAGAAGCCCCAAGATCATGG
AAATGTGACCGAACTTGAAAATGTTTTAGCGAGCCATGAAAGGGAGCTTC
ATATTCCGCAGGGGTGTCCAACTGCGCCCAACCAAATGGCGGCGAATGCC
GATAACAGTGGAGACATTTCTTTGACCACTGGGGCACGCCAAACATCTTC
ACTTCCGCAACCGATTGTCCTGAAAAGAAATCTCAACTATGAGAATCAAG
AGCACGGTCTTCAAGAGCTTTTCCGGCTTCTAAGTGAACCTGTACCCCCG
CCAAACAAAAAGCGAAGAATAGGCTATCACTGCAGAAATGCTGAAAACCC
AGAGCTCAATGTGCAGCCAACAGACAGGACTTTGGCTGCTCCCTGTCTTG
CAAACGTCTGCAGAGAGGACCCCCCAGCAAAGAATGTGCCATGGCAGCAA
ATCCCTTCCATTCTGAAACCTCACATCATTAACGATGCTTGGACTGAGTT
TCTTCGAAGTGGGCTCAAGGAAGTTACTACATGCCAAGCACCGGCTTATG
AGCAGCCTGCTCAACTTGTTTCCGTCGATCCTCCGGCAAAAACACCAGAT
GATGCCATACCTTTCATTGAGAACTGTGACAAAGAGCCGGCGTTGAAATT
GTCCGCACCTCTTGACGATTCGTGGTTCCTAGACCACAACCCCCCACCTG
CTCCCAATTTCCAGGGCGCACCGTCAGCTCAACCTAGAAACGATCCTCCA
ATCGTTGCTCAGAGTGAAACGACCAATCCCGTGGGTTCTGCCAACTTTTC
ATATGATACTACGCAACCATGCACGGTAGTCCCTCAAGTTGTTCCACAGG
TTGAGATTCTCTACCCAAGTGCTTTGGGGAACAAGCCTCCAGAAGCGGTT
CGCTCTCTTCTCCGAGCTTCGGCAAACGACATAGTCTCCAAGATTGAATT
GTACTGGTCACATTTCCATGATTATCGCATTTCAGCTGAAAGAGCAGGGC
ACTTGCTTCGAGAGAAAAGTGTGAGGTTTGAAAGACGTAAGCGAATGGGC
CCTGAAGTGCCTGCGATTGAAAAAAAAGCGATCCGCGCGCAAAGAAATCG
CGAGCGTAGTCAAGCCCTACGTCGCTATCACAAGCAACGGATGGAACACC
TTGAGGCAGTTAGTGGACAGCTGAAGGTGTATAATTCAGTGGCAAAGTCG
CTCATCAATTGCCTATTAGAGGAGCCGAAGTCCCTCGATTTAGTGCAAGA
GTATTTTAAGTCTCATGAATGCAATGAAGAACTTCTGGCATACTTGAGAG
AATCGAACTGA
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protein sequence of Gvermi11945.t1

>Gvermi11945.t1 ID=Gvermi11945.t1|Name=Gvermi11945.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=587bp
MDSLFSSFDNGISFDNVADFEEIMSKTLELGNISTEAIANALQNTLDTRQ
FTCLGEDQGNPSTEHALVPGKTDINSYFTPPSPVSRDASLFALNFESNDH
TAKETTDHQMQVKRNGSQSQQERNNLFTQPDATSRITKELSVNAFARGHP
NQNASEERDMQKPQDHGNVTELENVLASHERELHIPQGCPTAPNQMAANA
DNSGDISLTTGARQTSSLPQPIVLKRNLNYENQEHGLQELFRLLSEPVPP
PNKKRRIGYHCRNAENPELNVQPTDRTLAAPCLANVCREDPPAKNVPWQQ
IPSILKPHIINDAWTEFLRSGLKEVTTCQAPAYEQPAQLVSVDPPAKTPD
DAIPFIENCDKEPALKLSAPLDDSWFLDHNPPPAPNFQGAPSAQPRNDPP
IVAQSETTNPVGSANFSYDTTQPCTVVPQVVPQVEILYPSALGNKPPEAV
RSLLRASANDIVSKIELYWSHFHDYRISAERAGHLLREKSVRFERRKRMG
PEVPAIEKKAIRAQRNRERSQALRRYHKQRMEHLEAVSGQLKVYNSVAKS
LINCLLEEPKSLDLVQEYFKSHECNEELLAYLRESN*
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mRNA from alignment at ScGOVlb_3404:2685280..2687040-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11945.t1 ID=Gvermi11945.t1|Name=Gvermi11945.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1761bp|location=Sequence derived from alignment at ScGOVlb_3404:2685280..2687040- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATTCACTGTTTTCTTCTTTTGACAACGGGATATCCTTCGACAATGT
TGCCGACTTTGAAGAAATAATGAGCAAGACACTTGAGCTCGGCAATATAT
CCACCGAAGCAATTGCTAATGCCCTTCAGAACACTCTTGATACGAGGCAA
TTCACATGTTTGGGTGAGGACCAAGGCAATCCTTCAACGGAACATGCCCT
GGTTCCGGGAAAAACTGATATCAATTCATACTTTACCCCTCCCAGTCCTG
TTTCTCGCGATGCATCCCTTTTTGCACTGAACTTTGAATCAAACGACCAT
ACCGCTAAAGAAACTACTGACCATCAAATGCAAGTTAAGCGGAATGGTAG
TCAGTCGCAACAAGAGAGAAACAACTTATTTACTCAACCAGATGCCACTT
CTCGCATTACAAAGGAACTTTCCGTTAACGCGTTTGCCAGGGGGCATCCT
AATCAAAATGCTTCTGAAGAGCGAGATATGCAGAAGCCCCAAGATCATGG
AAATGTGACCGAACTTGAAAATGTTTTAGCGAGCCATGAAAGGGAGCTTC
ATATTCCGCAGGGGTGTCCAACTGCGCCCAACCAAATGGCGGCGAATGCC
GATAACAGTGGAGACATTTCTTTGACCACTGGGGCACGCCAAACATCTTC
ACTTCCGCAACCGATTGTCCTGAAAAGAAATCTCAACTATGAGAATCAAG
AGCACGGTCTTCAAGAGCTTTTCCGGCTTCTAAGTGAACCTGTACCCCCG
CCAAACAAAAAGCGAAGAATAGGCTATCACTGCAGAAATGCTGAAAACCC
AGAGCTCAATGTGCAGCCAACAGACAGGACTTTGGCTGCTCCCTGTCTTG
CAAACGTCTGCAGAGAGGACCCCCCAGCAAAGAATGTGCCATGGCAGCAA
ATCCCTTCCATTCTGAAACCTCACATCATTAACGATGCTTGGACTGAGTT
TCTTCGAAGTGGGCTCAAGGAAGTTACTACATGCCAAGCACCGGCTTATG
AGCAGCCTGCTCAACTTGTTTCCGTCGATCCTCCGGCAAAAACACCAGAT
GATGCCATACCTTTCATTGAGAACTGTGACAAAGAGCCGGCGTTGAAATT
GTCCGCACCTCTTGACGATTCGTGGTTCCTAGACCACAACCCCCCACCTG
CTCCCAATTTCCAGGGCGCACCGTCAGCTCAACCTAGAAACGATCCTCCA
ATCGTTGCTCAGAGTGAAACGACCAATCCCGTGGGTTCTGCCAACTTTTC
ATATGATACTACGCAACCATGCACGGTAGTCCCTCAAGTTGTTCCACAGG
TTGAGATTCTCTACCCAAGTGCTTTGGGGAACAAGCCTCCAGAAGCGGTT
CGCTCTCTTCTCCGAGCTTCGGCAAACGACATAGTCTCCAAGATTGAATT
GTACTGGTCACATTTCCATGATTATCGCATTTCAGCTGAAAGAGCAGGGC
ACTTGCTTCGAGAGAAAAGTGTGAGGTTTGAAAGACGTAAGCGAATGGGC
CCTGAAGTGCCTGCGATTGAAAAAAAAGCGATCCGCGCGCAAAGAAATCG
CGAGCGTAGTCAAGCCCTACGTCGCTATCACAAGCAACGGATGGAACACC
TTGAGGCAGTTAGTGGACAGCTGAAGGTGTATAATTCAGTGGCAAAGTCG
CTCATCAATTGCCTATTAGAGGAGCCGAAGTCCCTCGATTTAGTGCAAGA
GTATTTTAAGTCTCATGAATGCAATGAAGAACTTCTGGCATACTTGAGAG
AATCGAACTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2685280..2687040-

>Gvermi11945.t1 ID=Gvermi11945.t1|Name=Gvermi11945.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1761bp|location=Sequence derived from alignment at ScGOVlb_3404:2685280..2687040- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATTCACTGTTTTCTTCTTTTGACAACGGGATATCCTTCGACAATGT
TGCCGACTTTGAAGAAATAATGAGCAAGACACTTGAGCTCGGCAATATAT
CCACCGAAGCAATTGCTAATGCCCTTCAGAACACTCTTGATACGAGGCAA
TTCACATGTTTGGGTGAGGACCAAGGCAATCCTTCAACGGAACATGCCCT
GGTTCCGGGAAAAACTGATATCAATTCATACTTTACCCCTCCCAGTCCTG
TTTCTCGCGATGCATCCCTTTTTGCACTGAACTTTGAATCAAACGACCAT
ACCGCTAAAGAAACTACTGACCATCAAATGCAAGTTAAGCGGAATGGTAG
TCAGTCGCAACAAGAGAGAAACAACTTATTTACTCAACCAGATGCCACTT
CTCGCATTACAAAGGAACTTTCCGTTAACGCGTTTGCCAGGGGGCATCCT
AATCAAAATGCTTCTGAAGAGCGAGATATGCAGAAGCCCCAAGATCATGG
AAATGTGACCGAACTTGAAAATGTTTTAGCGAGCCATGAAAGGGAGCTTC
ATATTCCGCAGGGGTGTCCAACTGCGCCCAACCAAATGGCGGCGAATGCC
GATAACAGTGGAGACATTTCTTTGACCACTGGGGCACGCCAAACATCTTC
ACTTCCGCAACCGATTGTCCTGAAAAGAAATCTCAACTATGAGAATCAAG
AGCACGGTCTTCAAGAGCTTTTCCGGCTTCTAAGTGAACCTGTACCCCCG
CCAAACAAAAAGCGAAGAATAGGCTATCACTGCAGAAATGCTGAAAACCC
AGAGCTCAATGTGCAGCCAACAGACAGGACTTTGGCTGCTCCCTGTCTTG
CAAACGTCTGCAGAGAGGACCCCCCAGCAAAGAATGTGCCATGGCAGCAA
ATCCCTTCCATTCTGAAACCTCACATCATTAACGATGCTTGGACTGAGTT
TCTTCGAAGTGGGCTCAAGGAAGTTACTACATGCCAAGCACCGGCTTATG
AGCAGCCTGCTCAACTTGTTTCCGTCGATCCTCCGGCAAAAACACCAGAT
GATGCCATACCTTTCATTGAGAACTGTGACAAAGAGCCGGCGTTGAAATT
GTCCGCACCTCTTGACGATTCGTGGTTCCTAGACCACAACCCCCCACCTG
CTCCCAATTTCCAGGGCGCACCGTCAGCTCAACCTAGAAACGATCCTCCA
ATCGTTGCTCAGAGTGAAACGACCAATCCCGTGGGTTCTGCCAACTTTTC
ATATGATACTACGCAACCATGCACGGTAGTCCCTCAAGTTGTTCCACAGG
TTGAGATTCTCTACCCAAGTGCTTTGGGGAACAAGCCTCCAGAAGCGGTT
CGCTCTCTTCTCCGAGCTTCGGCAAACGACATAGTCTCCAAGATTGAATT
GTACTGGTCACATTTCCATGATTATCGCATTTCAGCTGAAAGAGCAGGGC
ACTTGCTTCGAGAGAAAAGTGTGAGGTTTGAAAGACGTAAGCGAATGGGC
CCTGAAGTGCCTGCGATTGAAAAAAAAGCGATCCGCGCGCAAAGAAATCG
CGAGCGTAGTCAAGCCCTACGTCGCTATCACAAGCAACGGATGGAACACC
TTGAGGCAGTTAGTGGACAGCTGAAGGTGTATAATTCAGTGGCAAAGTCG
CTCATCAATTGCCTATTAGAGGAGCCGAAGTCCCTCGATTTAGTGCAAGA
GTATTTTAAGTCTCATGAATGCAATGAAGAACTTCTGGCATACTTGAGAG
AATCGAACTGA
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