Gvermi11944.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11944.t1
Unique NameGvermi11944.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length313
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2682296..2683337 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMP013CT
Preferred nameYHM2
PFAMsMito_carr
Max annot lvl2759|Eukaryota
KEGG koko:K15100
KEGG TC2.A.29.7
GOsGO:0000002,GO:0003674,GO:0003676,GO:0003677,GO:0005215,GO:0005310,GO:0005342,GO:0005371,GO:0005469,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0006810,GO:0006811,GO:0006820,GO:0006835,GO:0006839,GO:0006842,GO:0006843,GO:0006855,GO:0006996,GO:0007005,GO:0008150,GO:0008509,GO:0008514,GO:0009295,GO:0009987,GO:0015075,GO:0015138,GO:0015141,GO:0015142,GO:0015238,GO:0015291,GO:0015297,GO:0015318,GO:0015556,GO:0015711,GO:0015740,GO:0015741,GO:0015742,GO:0015744,GO:0015746,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0016043,GO:0019866,GO:0022804,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0034220,GO:0035674,GO:0042221,GO:0042493,GO:0042645,GO:0042891,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051181,GO:0051234,GO:0055085,GO:0070013,GO:0071422,GO:0071702,GO:0071840,GO:0097159,GO:0098656,GO:1901363,GO:1903825,GO:1905039,GO:1990542,GO:1990546
Evalue1.47e-112
EggNOG OGsKOG0756@1|root,KOG0756@2759|Eukaryota
Descriptionmitochondrial tricarboxylic acid transmembrane transport
COG categoryU
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11944Gvermi11944Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2682296..2683337 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11944.t1Gvermi11944.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2682296..2683337 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11944.t1.stop1Gvermi11944.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2682296..2682298 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11944.t1.CDS1Gvermi11944.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2682296..2683129 -
Gvermi11944.t1.CDS2Gvermi11944.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2683233..2683337 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11944.t1.exon1Gvermi11944.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2682296..2683129 -
Gvermi11944.t1.exon2Gvermi11944.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2683233..2683337 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11944.t1.intron1Gvermi11944.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 2683130..2683232 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11944.t1.start1Gvermi11944.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2683335..2683337 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11944.t1 ID=Gvermi11944.t1|Name=Gvermi11944.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=313bp
MPVSGLDSKRDPLNVVTNRDRKELLAKRGSVDLRNVAIGAGLNMFEVTTL
GQPFENMKVMMAAHRNDTLRGACKRLYSAGGISAFWQGLIPWAWIEALTK
GGVLMFSQHEIKKVLNRLGYGPELSNALGGVGGGICQAYSTMGICCFMKT
VEVTRSKVGPGGQKSTMVVAADILKRDGILGMYKGVNAVAIRQATNWGSR
FGFSRVIESAIKGKDRERSLTRPERLASSVVGGAFACWNQPFEVIRVEMQ
RADGSPGSRTIGGAVRHIYESSGLRGFYRGVTPRVGLSAYLTTVMVFGGD
EVRSYLDKRAKR*
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spliced messenger RNA

>Gvermi11944.t1 ID=Gvermi11944.t1|Name=Gvermi11944.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=939bp|location=Sequence derived from alignment at ScGOVlb_3404:2682296..2683337- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGTCAGCGGACTTGATTCTAAGCGTGATCCTCTGAATGTTGTCAC
CAACCGCGACAGAAAAGAATTGCTGGCGAAGCGGGGCAGTGTTGACCTTC
GCAATGTGGCGATCGGAGCGGGTTTAAATATGTTCGAAGTTACAACTTTA
GGGCAACCGTTTGAGAACATGAAGGTCATGATGGCTGCTCACCGAAATGA
TACCTTGCGGGGTGCTTGTAAGCGTCTTTATTCCGCTGGTGGTATTTCTG
CATTCTGGCAGGGACTTATTCCGTGGGCATGGATTGAAGCGTTAACAAAA
GGAGGGGTGTTGATGTTTTCACAGCACGAAATTAAGAAAGTATTGAATAG
GCTCGGATATGGGCCGGAGCTCTCAAACGCGTTAGGAGGTGTTGGTGGAG
GTATATGTCAGGCTTACTCCACCATGGGTATTTGCTGTTTTATGAAGACG
GTCGAAGTGACAAGGTCAAAAGTTGGTCCAGGTGGTCAAAAGTCCACGAT
GGTCGTTGCAGCAGACATCCTCAAACGAGATGGCATCCTGGGCATGTACA
AGGGTGTGAACGCTGTGGCCATTAGACAGGCTACCAACTGGGGCTCTCGT
TTTGGGTTTTCTCGAGTCATTGAGTCGGCGATAAAAGGCAAGGACAGAGA
AAGAAGTCTTACGAGACCGGAAAGATTAGCTTCAAGCGTCGTCGGAGGTG
CATTTGCTTGTTGGAACCAGCCATTTGAAGTCATCCGTGTTGAAATGCAG
AGAGCGGATGGTAGTCCAGGAAGTAGAACTATAGGTGGGGCCGTTCGACA
TATATATGAAAGTAGTGGGTTGCGGGGGTTTTACAGGGGTGTCACTCCGC
GAGTAGGTCTGTCGGCATATCTGACAACGGTGATGGTCTTTGGAGGTGAT
GAGGTTCGAAGCTATTTAGATAAACGTGCAAAAAGGTAA
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protein sequence of Gvermi11944.t1

>Gvermi11944.t1 ID=Gvermi11944.t1|Name=Gvermi11944.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=313bp
MPVSGLDSKRDPLNVVTNRDRKELLAKRGSVDLRNVAIGAGLNMFEVTTL
GQPFENMKVMMAAHRNDTLRGACKRLYSAGGISAFWQGLIPWAWIEALTK
GGVLMFSQHEIKKVLNRLGYGPELSNALGGVGGGICQAYSTMGICCFMKT
VEVTRSKVGPGGQKSTMVVAADILKRDGILGMYKGVNAVAIRQATNWGSR
FGFSRVIESAIKGKDRERSLTRPERLASSVVGGAFACWNQPFEVIRVEMQ
RADGSPGSRTIGGAVRHIYESSGLRGFYRGVTPRVGLSAYLTTVMVFGGD
EVRSYLDKRAKR*
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mRNA from alignment at ScGOVlb_3404:2682296..2683337-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11944.t1 ID=Gvermi11944.t1|Name=Gvermi11944.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1042bp|location=Sequence derived from alignment at ScGOVlb_3404:2682296..2683337- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCGTCAGCGGACTTGATTCTAAGCGTGATCCTCTGAATGTTGTCAC
CAACCGCGACAGAAAAGAATTGCTGGCGAAGCGGGGCAGTGTTGACCTTC
GCAATGTAAGATTACCGGCTCTGCTTTGGTTTTCCAATAGTTGCAAAACA
CGGAGATTGGTGCACGGGAAGAAGCACGAAGCTAACAGAATCTATTGTGT
GTGTACAGGTGGCGATCGGAGCGGGTTTAAATATGTTCGAAGTTACAACT
TTAGGGCAACCGTTTGAGAACATGAAGGTCATGATGGCTGCTCACCGAAA
TGATACCTTGCGGGGTGCTTGTAAGCGTCTTTATTCCGCTGGTGGTATTT
CTGCATTCTGGCAGGGACTTATTCCGTGGGCATGGATTGAAGCGTTAACA
AAAGGAGGGGTGTTGATGTTTTCACAGCACGAAATTAAGAAAGTATTGAA
TAGGCTCGGATATGGGCCGGAGCTCTCAAACGCGTTAGGAGGTGTTGGTG
GAGGTATATGTCAGGCTTACTCCACCATGGGTATTTGCTGTTTTATGAAG
ACGGTCGAAGTGACAAGGTCAAAAGTTGGTCCAGGTGGTCAAAAGTCCAC
GATGGTCGTTGCAGCAGACATCCTCAAACGAGATGGCATCCTGGGCATGT
ACAAGGGTGTGAACGCTGTGGCCATTAGACAGGCTACCAACTGGGGCTCT
CGTTTTGGGTTTTCTCGAGTCATTGAGTCGGCGATAAAAGGCAAGGACAG
AGAAAGAAGTCTTACGAGACCGGAAAGATTAGCTTCAAGCGTCGTCGGAG
GTGCATTTGCTTGTTGGAACCAGCCATTTGAAGTCATCCGTGTTGAAATG
CAGAGAGCGGATGGTAGTCCAGGAAGTAGAACTATAGGTGGGGCCGTTCG
ACATATATATGAAAGTAGTGGGTTGCGGGGGTTTTACAGGGGTGTCACTC
CGCGAGTAGGTCTGTCGGCATATCTGACAACGGTGATGGTCTTTGGAGGT
GATGAGGTTCGAAGCTATTTAGATAAACGTGCAAAAAGGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2682296..2683337-

>Gvermi11944.t1 ID=Gvermi11944.t1|Name=Gvermi11944.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=939bp|location=Sequence derived from alignment at ScGOVlb_3404:2682296..2683337- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCGTCAGCGGACTTGATTCTAAGCGTGATCCTCTGAATGTTGTCAC
CAACCGCGACAGAAAAGAATTGCTGGCGAAGCGGGGCAGTGTTGACCTTC
GCAATGTGGCGATCGGAGCGGGTTTAAATATGTTCGAAGTTACAACTTTA
GGGCAACCGTTTGAGAACATGAAGGTCATGATGGCTGCTCACCGAAATGA
TACCTTGCGGGGTGCTTGTAAGCGTCTTTATTCCGCTGGTGGTATTTCTG
CATTCTGGCAGGGACTTATTCCGTGGGCATGGATTGAAGCGTTAACAAAA
GGAGGGGTGTTGATGTTTTCACAGCACGAAATTAAGAAAGTATTGAATAG
GCTCGGATATGGGCCGGAGCTCTCAAACGCGTTAGGAGGTGTTGGTGGAG
GTATATGTCAGGCTTACTCCACCATGGGTATTTGCTGTTTTATGAAGACG
GTCGAAGTGACAAGGTCAAAAGTTGGTCCAGGTGGTCAAAAGTCCACGAT
GGTCGTTGCAGCAGACATCCTCAAACGAGATGGCATCCTGGGCATGTACA
AGGGTGTGAACGCTGTGGCCATTAGACAGGCTACCAACTGGGGCTCTCGT
TTTGGGTTTTCTCGAGTCATTGAGTCGGCGATAAAAGGCAAGGACAGAGA
AAGAAGTCTTACGAGACCGGAAAGATTAGCTTCAAGCGTCGTCGGAGGTG
CATTTGCTTGTTGGAACCAGCCATTTGAAGTCATCCGTGTTGAAATGCAG
AGAGCGGATGGTAGTCCAGGAAGTAGAACTATAGGTGGGGCCGTTCGACA
TATATATGAAAGTAGTGGGTTGCGGGGGTTTTACAGGGGTGTCACTCCGC
GAGTAGGTCTGTCGGCATATCTGACAACGGTGATGGTCTTTGGAGGTGAT
GAGGTTCGAAGCTATTTAGATAAACGTGCAAAAAGGTAA
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