Gvermi11943.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11943.t1
Unique NameGvermi11943.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length140
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2680867..2681566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMP012CT
Preferred nameRPL34
PFAMsRibosomal_L34e
Max annot lvl2759|Eukaryota
KEGG koko:K02915
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0017022,GO:0019222,GO:0019439,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0031090,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042254,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:0098588,GO:0098805,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Evalue5.6e-39
EggNOG OGsCOG2174@1|root,KOG1790@2759|Eukaryota
Descriptionstructural constituent of ribosome
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11943Gvermi11943Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2680867..2681566 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11943.t1Gvermi11943.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2680867..2681566 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11943.t1.start1Gvermi11943.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2680867..2680869 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11943.t1.CDS1Gvermi11943.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2680867..2680934 +
Gvermi11943.t1.CDS2Gvermi11943.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2681021..2681218 +
Gvermi11943.t1.CDS3Gvermi11943.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2681413..2681566 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11943.t1.exon1Gvermi11943.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2680867..2680934 +
Gvermi11943.t1.exon2Gvermi11943.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2681021..2681218 +
Gvermi11943.t1.exon3Gvermi11943.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2681413..2681566 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11943.t1.intron1Gvermi11943.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 2680935..2681020 +
Gvermi11943.t1.intron2Gvermi11943.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 2681219..2681412 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11943.t1.stop1Gvermi11943.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2681564..2681566 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11943.t1 ID=Gvermi11943.t1|Name=Gvermi11943.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=140bp
MPDTRVTLRRSSPYKTRSNKFKKVRTPGGKLTIHYIKKLPSVPKCGDTGR
PLFGIAVARPKELKRMSKRKKSVSRSYGGVLSGYAVRNRIIRAFLLEEQK
IVKKVIKQQKAQKAKQAAAAASATTTKKKKGSSKSKGKK*
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spliced messenger RNA

>Gvermi11943.t1 ID=Gvermi11943.t1|Name=Gvermi11943.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=420bp|location=Sequence derived from alignment at ScGOVlb_3404:2680867..2681566+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGACACGCGCGTTACTCTTCGGAGGAGCAGCCCCTACAAGACTCG
AAGTAACAAATTCAAGAAGGTCCGCACCCCTGGAGGAAAGCTCACTATCC
ATTACATCAAGAAGCTTCCCAGCGTACCGAAATGTGGTGATACCGGGCGA
CCTCTCTTCGGTATTGCCGTCGCACGACCAAAGGAGCTCAAGCGTATGTC
AAAGCGAAAGAAGTCTGTCTCCAGATCCTACGGCGGTGTCCTCTCTGGAT
ATGCGGTTCGCAATAGGATCATTCGCGCATTCCTTCTTGAAGAACAGAAA
ATCGTGAAGAAGGTTATTAAGCAACAGAAAGCTCAAAAAGCGAAGCAAGC
TGCTGCCGCCGCTTCCGCTACAACTACCAAGAAGAAGAAAGGTTCAAGCA
AGTCTAAGGGAAAGAAGTAA
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protein sequence of Gvermi11943.t1

>Gvermi11943.t1 ID=Gvermi11943.t1|Name=Gvermi11943.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=140bp
MPDTRVTLRRSSPYKTRSNKFKKVRTPGGKLTIHYIKKLPSVPKCGDTGR
PLFGIAVARPKELKRMSKRKKSVSRSYGGVLSGYAVRNRIIRAFLLEEQK
IVKKVIKQQKAQKAKQAAAAASATTTKKKKGSSKSKGKK*
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mRNA from alignment at ScGOVlb_3404:2680867..2681566+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11943.t1 ID=Gvermi11943.t1|Name=Gvermi11943.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=700bp|location=Sequence derived from alignment at ScGOVlb_3404:2680867..2681566+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGGACACGCGCGTTACTCTTCGGAGGAGCAGCCCCTACAAGACTCG
AAGTAACAAATTCAAGAAGTAAGTCCCTCGATCTCGATCCCACGTCGTCC
ACCGCCGTTGACGCCACCATGCCTTTGCTGACGCTCCTTTTTTCTGATCC
CAAGGGTCCGCACCCCTGGAGGAAAGCTCACTATCCATTACATCAAGAAG
CTTCCCAGCGTACCGAAATGTGGTGATACCGGGCGACCTCTCTTCGGTAT
TGCCGTCGCACGACCAAAGGAGCTCAAGCGTATGTCAAAGCGAAAGAAGT
CTGTCTCCAGATCCTACGGCGGTGTCCTCTCTGGATATGCGGTTCGCAAT
AGGTACGTACTCACAGCATTGCCTCTCCAGCAGATGAAGATATGTGCACG
GATTCCCTTTTACAGATGGCTCGTCCACATGAGTAACATCTACGCCCTAG
TCCGATGCCCAACACCACGACGCCGTTTAATCCGCCTCTGTTTCATGTGA
TCTTACTGACTCGTCCACGCGATGGTATCACCGCTTTGCACAACAGGATC
ATTCGCGCATTCCTTCTTGAAGAACAGAAAATCGTGAAGAAGGTTATTAA
GCAACAGAAAGCTCAAAAAGCGAAGCAAGCTGCTGCCGCCGCTTCCGCTA
CAACTACCAAGAAGAAGAAAGGTTCAAGCAAGTCTAAGGGAAAGAAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2680867..2681566+

>Gvermi11943.t1 ID=Gvermi11943.t1|Name=Gvermi11943.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=420bp|location=Sequence derived from alignment at ScGOVlb_3404:2680867..2681566+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGGACACGCGCGTTACTCTTCGGAGGAGCAGCCCCTACAAGACTCG
AAGTAACAAATTCAAGAAGGTCCGCACCCCTGGAGGAAAGCTCACTATCC
ATTACATCAAGAAGCTTCCCAGCGTACCGAAATGTGGTGATACCGGGCGA
CCTCTCTTCGGTATTGCCGTCGCACGACCAAAGGAGCTCAAGCGTATGTC
AAAGCGAAAGAAGTCTGTCTCCAGATCCTACGGCGGTGTCCTCTCTGGAT
ATGCGGTTCGCAATAGGATCATTCGCGCATTCCTTCTTGAAGAACAGAAA
ATCGTGAAGAAGGTTATTAAGCAACAGAAAGCTCAAAAAGCGAAGCAAGC
TGCTGCCGCCGCTTCCGCTACAACTACCAAGAAGAAGAAAGGTTCAAGCA
AGTCTAAGGGAAAGAAGTAA
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