Gvermi11941.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11941.t1
Unique NameGvermi11941.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length387
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2677796..2678956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1365176.N186_00370
PFAMsEpimerase
Max annot lvl28889|Crenarchaeota
Evalue3.34e-36
EggNOG OGsCOG0451@1|root,arCOG01369@2157|Archaea,2XRSX@28889|Crenarchaeota
DescriptionNmrA-like family
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11941Gvermi11941Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2677796..2678956 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11941.t1.start1Gvermi11941.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2677796..2677798 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11941.t1.CDS1Gvermi11941.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2677796..2678956 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11941.t1.exon1Gvermi11941.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2677796..2678956 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11941.t1.stop1Gvermi11941.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2678954..2678956 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11941.t1Gvermi11941.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2677796..2678956 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11941.t1 ID=Gvermi11941.t1|Name=Gvermi11941.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=387bp
MASLSPASKQTIVVTGGTGYIGYALLWEIRQRFMHAFTPISIVRASSDIV
RLQRLLDYPSSHDAVIICDLGNVDSLRNGVKHADIVVHLAADMDFFPKKR
KELYAVNVKGTQNLLNACASEAEVSKRKIRFVYVSSTEAIGRTDGVSKAD
ETYPLNPESEYGNSKVLAEGIVKEYSKKLDTVIVRPTGVYGPDERFFFYE
FMQMVSYGITIVVPSPMTGRVSFTHIDDVVGGILACATHPAAPGNIYNLC
PNDSVTYLSIVQKLADLLKYPRPLVFLPISVGRLLIGLIAPIMNIGKSRV
FIYHPKTVSETMHNREYSNEKIRRELGFEPQHTVLGGIEKTMTYELEVGG
IKRSVVPPAIKRCLDVLWVTTFFIRQVFLRRHQARS*
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spliced messenger RNA

>Gvermi11941.t1 ID=Gvermi11941.t1|Name=Gvermi11941.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1161bp|location=Sequence derived from alignment at ScGOVlb_3404:2677796..2678956+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCATTAAGTCCTGCTTCTAAACAAACGATCGTTGTGACGGGCGG
GACCGGCTACATCGGCTATGCCCTCTTATGGGAAATTCGACAGCGATTTA
TGCATGCGTTCACTCCAATATCGATTGTACGCGCTTCGTCTGATATCGTA
CGATTGCAAAGGTTACTTGATTATCCGAGTTCTCACGACGCAGTCATCAT
TTGTGACCTTGGAAACGTCGATTCCTTGAGAAATGGAGTGAAGCACGCCG
ATATCGTTGTGCATCTGGCCGCAGATATGGATTTCTTTCCGAAAAAACGC
AAGGAACTATATGCTGTCAACGTGAAGGGCACTCAGAATCTTCTTAATGC
CTGCGCTTCTGAAGCAGAAGTTTCTAAGAGGAAAATCCGGTTTGTGTACG
TTTCTTCAACTGAGGCCATAGGTCGAACAGATGGCGTGTCAAAGGCTGAC
GAGACATACCCCCTCAATCCTGAATCAGAGTATGGTAACTCAAAAGTTCT
TGCCGAAGGCATTGTTAAGGAGTATAGTAAGAAACTTGACACGGTTATTG
TTCGTCCCACTGGAGTTTATGGACCGGATGAGCGCTTCTTCTTCTACGAA
TTCATGCAAATGGTTTCGTATGGGATCACAATTGTGGTCCCGTCCCCCAT
GACCGGACGAGTTTCGTTCACCCACATCGACGATGTTGTTGGCGGTATCC
TTGCGTGCGCGACTCATCCAGCCGCTCCAGGAAATATTTATAATCTATGC
CCAAACGACTCAGTGACATACTTGTCGATTGTGCAAAAGCTGGCAGATCT
GCTGAAGTATCCGCGTCCTTTAGTGTTTCTGCCAATATCTGTTGGCAGGC
TTCTCATCGGGTTAATTGCTCCAATAATGAACATAGGAAAGTCACGAGTC
TTCATTTACCATCCAAAAACTGTTTCAGAGACAATGCACAATCGCGAGTA
CTCGAACGAGAAAATTCGACGTGAACTAGGTTTCGAACCACAACACACAG
TCCTTGGAGGAATCGAAAAGACCATGACATACGAGCTCGAGGTTGGGGGC
ATTAAAAGGTCAGTAGTACCTCCAGCAATTAAGCGATGCCTTGACGTGTT
GTGGGTTACAACATTTTTTATTCGCCAAGTGTTTCTCCGCCGTCACCAGG
CTAGGAGTTAA
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protein sequence of Gvermi11941.t1

>Gvermi11941.t1 ID=Gvermi11941.t1|Name=Gvermi11941.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=387bp
MASLSPASKQTIVVTGGTGYIGYALLWEIRQRFMHAFTPISIVRASSDIV
RLQRLLDYPSSHDAVIICDLGNVDSLRNGVKHADIVVHLAADMDFFPKKR
KELYAVNVKGTQNLLNACASEAEVSKRKIRFVYVSSTEAIGRTDGVSKAD
ETYPLNPESEYGNSKVLAEGIVKEYSKKLDTVIVRPTGVYGPDERFFFYE
FMQMVSYGITIVVPSPMTGRVSFTHIDDVVGGILACATHPAAPGNIYNLC
PNDSVTYLSIVQKLADLLKYPRPLVFLPISVGRLLIGLIAPIMNIGKSRV
FIYHPKTVSETMHNREYSNEKIRRELGFEPQHTVLGGIEKTMTYELEVGG
IKRSVVPPAIKRCLDVLWVTTFFIRQVFLRRHQARS*
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mRNA from alignment at ScGOVlb_3404:2677796..2678956+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11941.t1 ID=Gvermi11941.t1|Name=Gvermi11941.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1161bp|location=Sequence derived from alignment at ScGOVlb_3404:2677796..2678956+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGTCATTAAGTCCTGCTTCTAAACAAACGATCGTTGTGACGGGCGG
GACCGGCTACATCGGCTATGCCCTCTTATGGGAAATTCGACAGCGATTTA
TGCATGCGTTCACTCCAATATCGATTGTACGCGCTTCGTCTGATATCGTA
CGATTGCAAAGGTTACTTGATTATCCGAGTTCTCACGACGCAGTCATCAT
TTGTGACCTTGGAAACGTCGATTCCTTGAGAAATGGAGTGAAGCACGCCG
ATATCGTTGTGCATCTGGCCGCAGATATGGATTTCTTTCCGAAAAAACGC
AAGGAACTATATGCTGTCAACGTGAAGGGCACTCAGAATCTTCTTAATGC
CTGCGCTTCTGAAGCAGAAGTTTCTAAGAGGAAAATCCGGTTTGTGTACG
TTTCTTCAACTGAGGCCATAGGTCGAACAGATGGCGTGTCAAAGGCTGAC
GAGACATACCCCCTCAATCCTGAATCAGAGTATGGTAACTCAAAAGTTCT
TGCCGAAGGCATTGTTAAGGAGTATAGTAAGAAACTTGACACGGTTATTG
TTCGTCCCACTGGAGTTTATGGACCGGATGAGCGCTTCTTCTTCTACGAA
TTCATGCAAATGGTTTCGTATGGGATCACAATTGTGGTCCCGTCCCCCAT
GACCGGACGAGTTTCGTTCACCCACATCGACGATGTTGTTGGCGGTATCC
TTGCGTGCGCGACTCATCCAGCCGCTCCAGGAAATATTTATAATCTATGC
CCAAACGACTCAGTGACATACTTGTCGATTGTGCAAAAGCTGGCAGATCT
GCTGAAGTATCCGCGTCCTTTAGTGTTTCTGCCAATATCTGTTGGCAGGC
TTCTCATCGGGTTAATTGCTCCAATAATGAACATAGGAAAGTCACGAGTC
TTCATTTACCATCCAAAAACTGTTTCAGAGACAATGCACAATCGCGAGTA
CTCGAACGAGAAAATTCGACGTGAACTAGGTTTCGAACCACAACACACAG
TCCTTGGAGGAATCGAAAAGACCATGACATACGAGCTCGAGGTTGGGGGC
ATTAAAAGGTCAGTAGTACCTCCAGCAATTAAGCGATGCCTTGACGTGTT
GTGGGTTACAACATTTTTTATTCGCCAAGTGTTTCTCCGCCGTCACCAGG
CTAGGAGTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2677796..2678956+

>Gvermi11941.t1 ID=Gvermi11941.t1|Name=Gvermi11941.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1161bp|location=Sequence derived from alignment at ScGOVlb_3404:2677796..2678956+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGTCATTAAGTCCTGCTTCTAAACAAACGATCGTTGTGACGGGCGG
GACCGGCTACATCGGCTATGCCCTCTTATGGGAAATTCGACAGCGATTTA
TGCATGCGTTCACTCCAATATCGATTGTACGCGCTTCGTCTGATATCGTA
CGATTGCAAAGGTTACTTGATTATCCGAGTTCTCACGACGCAGTCATCAT
TTGTGACCTTGGAAACGTCGATTCCTTGAGAAATGGAGTGAAGCACGCCG
ATATCGTTGTGCATCTGGCCGCAGATATGGATTTCTTTCCGAAAAAACGC
AAGGAACTATATGCTGTCAACGTGAAGGGCACTCAGAATCTTCTTAATGC
CTGCGCTTCTGAAGCAGAAGTTTCTAAGAGGAAAATCCGGTTTGTGTACG
TTTCTTCAACTGAGGCCATAGGTCGAACAGATGGCGTGTCAAAGGCTGAC
GAGACATACCCCCTCAATCCTGAATCAGAGTATGGTAACTCAAAAGTTCT
TGCCGAAGGCATTGTTAAGGAGTATAGTAAGAAACTTGACACGGTTATTG
TTCGTCCCACTGGAGTTTATGGACCGGATGAGCGCTTCTTCTTCTACGAA
TTCATGCAAATGGTTTCGTATGGGATCACAATTGTGGTCCCGTCCCCCAT
GACCGGACGAGTTTCGTTCACCCACATCGACGATGTTGTTGGCGGTATCC
TTGCGTGCGCGACTCATCCAGCCGCTCCAGGAAATATTTATAATCTATGC
CCAAACGACTCAGTGACATACTTGTCGATTGTGCAAAAGCTGGCAGATCT
GCTGAAGTATCCGCGTCCTTTAGTGTTTCTGCCAATATCTGTTGGCAGGC
TTCTCATCGGGTTAATTGCTCCAATAATGAACATAGGAAAGTCACGAGTC
TTCATTTACCATCCAAAAACTGTTTCAGAGACAATGCACAATCGCGAGTA
CTCGAACGAGAAAATTCGACGTGAACTAGGTTTCGAACCACAACACACAG
TCCTTGGAGGAATCGAAAAGACCATGACATACGAGCTCGAGGTTGGGGGC
ATTAAAAGGTCAGTAGTACCTCCAGCAATTAAGCGATGCCTTGACGTGTT
GTGGGTTACAACATTTTTTATTCGCCAAGTGTTTCTCCGCCGTCACCAGG
CTAGGAGTTAA
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