Gvermi11940.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11940.t1
Unique NameGvermi11940.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length430
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2673138..2674427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_04536T0
PFAMsExo_endo_phos
Max annot lvl33154|Opisthokonta
Evalue8.31e-42
EggNOG OGs2CYAE@1|root,2S367@2759|Eukaryota,3AB67@33154|Opisthokonta
DescriptionEndonuclease/Exonuclease/phosphatase family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11940Gvermi11940Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2673138..2674427 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11940.t1.start1Gvermi11940.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2673138..2673140 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11940.t1.CDS1Gvermi11940.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2673138..2674427 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11940.t1.exon1Gvermi11940.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2673138..2674427 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11940.t1.stop1Gvermi11940.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2674425..2674427 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11940.t1Gvermi11940.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2673138..2674427 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11940.t1 ID=Gvermi11940.t1|Name=Gvermi11940.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=430bp
MDVIDTAAPTCAGRYPITAGAPSCFRPSLLADEHNAQFLHIYAYVPRFMY
CYSGRLRFPRLLVVVIFLLSMLAVFDYAMHSSSTVRTHSKQIASCGRLQS
SGAHAITVHFMTLNTFIRPIGVGTADFKDERLDDLAHVLRSFDVICFQEL
FNWSGYRKVKFLQQLAKHYGFIYHTTTPSPGFRGLFSYPPKLIDGGLVIA
SRFQILRTDYQIYSRANFHSIDFIVAKGALYAQIAVPMPNSSSCAVNVFT
THMQASNGLSVDFSATRHAQLEQLLHFVRQKTQPDPSVPIILAGDFNVNG
RRACDDSSSSHEYEQMMSVLRKIRQFSPLQDILYEASGHEHPVTGAGGLY
GDTQKNERLDYIFFSPGARRRATSGCNVTTIPASVRVQPLRVSQRPYRTL
SDHYAVVSNFRFEQTTNLGHRPCGVALLV*
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spliced messenger RNA

>Gvermi11940.t1 ID=Gvermi11940.t1|Name=Gvermi11940.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1290bp|location=Sequence derived from alignment at ScGOVlb_3404:2673138..2674427+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGTTATCGACACCGCTGCGCCCACATGCGCCGGTCGCTACCCGAT
TACCGCCGGCGCGCCCTCTTGCTTCCGTCCATCGTTGCTCGCTGACGAGC
ACAACGCCCAATTTTTGCACATTTACGCCTACGTTCCGCGCTTCATGTAT
TGTTATTCTGGCCGTCTTCGTTTTCCGCGTCTGCTTGTGGTCGTAATTTT
CTTGCTGTCAATGCTGGCTGTTTTCGACTACGCCATGCACAGTTCGTCAA
CCGTGCGCACGCACAGCAAGCAAATCGCATCGTGCGGTCGCCTCCAAAGT
AGTGGCGCTCATGCAATCACTGTGCACTTCATGACTTTAAACACGTTCAT
CCGCCCAATCGGTGTCGGGACAGCAGATTTCAAGGACGAACGCCTTGACG
ACTTGGCGCACGTGCTGCGTTCGTTTGATGTCATTTGCTTCCAGGAGCTC
TTCAATTGGAGTGGATATCGCAAAGTAAAGTTTCTTCAACAACTGGCAAA
GCACTATGGTTTCATCTATCACACAACGACCCCGTCGCCTGGTTTCAGGG
GGCTTTTTTCCTATCCCCCCAAGTTAATTGACGGCGGCTTAGTCATAGCG
TCGCGTTTTCAGATTCTTCGCACAGACTACCAAATCTACTCTCGAGCAAA
CTTCCATTCCATTGATTTCATAGTTGCCAAGGGCGCCCTGTATGCTCAGA
TTGCCGTTCCAATGCCGAATTCCAGCAGCTGCGCCGTCAACGTGTTTACC
ACGCACATGCAAGCAAGCAATGGATTGAGTGTCGATTTCAGCGCCACCCG
CCACGCCCAGCTCGAACAGCTGCTTCACTTTGTGCGACAGAAAACACAGC
CCGACCCAAGTGTCCCAATCATACTTGCGGGAGATTTCAACGTCAACGGC
CGTCGCGCATGTGATGATTCATCTTCTTCGCACGAATACGAGCAGATGAT
GTCTGTTCTTCGAAAAATACGCCAATTTTCTCCACTCCAAGATATTCTGT
ACGAAGCAAGCGGGCACGAGCATCCGGTGACTGGCGCTGGCGGCCTTTAC
GGAGACACGCAGAAAAACGAACGCCTCGACTACATCTTCTTCAGCCCTGG
AGCCAGACGCCGAGCAACGTCAGGGTGCAATGTCACAACTATCCCGGCTT
CGGTTCGAGTTCAGCCATTGCGAGTGTCTCAGAGACCATACCGCACTTTA
AGTGACCACTACGCTGTGGTTTCCAACTTCAGATTTGAACAAACAACAAA
TCTGGGTCACAGACCATGCGGCGTGGCTCTACTCGTTTGA
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protein sequence of Gvermi11940.t1

>Gvermi11940.t1 ID=Gvermi11940.t1|Name=Gvermi11940.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=430bp
MDVIDTAAPTCAGRYPITAGAPSCFRPSLLADEHNAQFLHIYAYVPRFMY
CYSGRLRFPRLLVVVIFLLSMLAVFDYAMHSSSTVRTHSKQIASCGRLQS
SGAHAITVHFMTLNTFIRPIGVGTADFKDERLDDLAHVLRSFDVICFQEL
FNWSGYRKVKFLQQLAKHYGFIYHTTTPSPGFRGLFSYPPKLIDGGLVIA
SRFQILRTDYQIYSRANFHSIDFIVAKGALYAQIAVPMPNSSSCAVNVFT
THMQASNGLSVDFSATRHAQLEQLLHFVRQKTQPDPSVPIILAGDFNVNG
RRACDDSSSSHEYEQMMSVLRKIRQFSPLQDILYEASGHEHPVTGAGGLY
GDTQKNERLDYIFFSPGARRRATSGCNVTTIPASVRVQPLRVSQRPYRTL
SDHYAVVSNFRFEQTTNLGHRPCGVALLV*
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mRNA from alignment at ScGOVlb_3404:2673138..2674427+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11940.t1 ID=Gvermi11940.t1|Name=Gvermi11940.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1290bp|location=Sequence derived from alignment at ScGOVlb_3404:2673138..2674427+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACGTTATCGACACCGCTGCGCCCACATGCGCCGGTCGCTACCCGAT
TACCGCCGGCGCGCCCTCTTGCTTCCGTCCATCGTTGCTCGCTGACGAGC
ACAACGCCCAATTTTTGCACATTTACGCCTACGTTCCGCGCTTCATGTAT
TGTTATTCTGGCCGTCTTCGTTTTCCGCGTCTGCTTGTGGTCGTAATTTT
CTTGCTGTCAATGCTGGCTGTTTTCGACTACGCCATGCACAGTTCGTCAA
CCGTGCGCACGCACAGCAAGCAAATCGCATCGTGCGGTCGCCTCCAAAGT
AGTGGCGCTCATGCAATCACTGTGCACTTCATGACTTTAAACACGTTCAT
CCGCCCAATCGGTGTCGGGACAGCAGATTTCAAGGACGAACGCCTTGACG
ACTTGGCGCACGTGCTGCGTTCGTTTGATGTCATTTGCTTCCAGGAGCTC
TTCAATTGGAGTGGATATCGCAAAGTAAAGTTTCTTCAACAACTGGCAAA
GCACTATGGTTTCATCTATCACACAACGACCCCGTCGCCTGGTTTCAGGG
GGCTTTTTTCCTATCCCCCCAAGTTAATTGACGGCGGCTTAGTCATAGCG
TCGCGTTTTCAGATTCTTCGCACAGACTACCAAATCTACTCTCGAGCAAA
CTTCCATTCCATTGATTTCATAGTTGCCAAGGGCGCCCTGTATGCTCAGA
TTGCCGTTCCAATGCCGAATTCCAGCAGCTGCGCCGTCAACGTGTTTACC
ACGCACATGCAAGCAAGCAATGGATTGAGTGTCGATTTCAGCGCCACCCG
CCACGCCCAGCTCGAACAGCTGCTTCACTTTGTGCGACAGAAAACACAGC
CCGACCCAAGTGTCCCAATCATACTTGCGGGAGATTTCAACGTCAACGGC
CGTCGCGCATGTGATGATTCATCTTCTTCGCACGAATACGAGCAGATGAT
GTCTGTTCTTCGAAAAATACGCCAATTTTCTCCACTCCAAGATATTCTGT
ACGAAGCAAGCGGGCACGAGCATCCGGTGACTGGCGCTGGCGGCCTTTAC
GGAGACACGCAGAAAAACGAACGCCTCGACTACATCTTCTTCAGCCCTGG
AGCCAGACGCCGAGCAACGTCAGGGTGCAATGTCACAACTATCCCGGCTT
CGGTTCGAGTTCAGCCATTGCGAGTGTCTCAGAGACCATACCGCACTTTA
AGTGACCACTACGCTGTGGTTTCCAACTTCAGATTTGAACAAACAACAAA
TCTGGGTCACAGACCATGCGGCGTGGCTCTACTCGTTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2673138..2674427+

>Gvermi11940.t1 ID=Gvermi11940.t1|Name=Gvermi11940.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1290bp|location=Sequence derived from alignment at ScGOVlb_3404:2673138..2674427+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACGTTATCGACACCGCTGCGCCCACATGCGCCGGTCGCTACCCGAT
TACCGCCGGCGCGCCCTCTTGCTTCCGTCCATCGTTGCTCGCTGACGAGC
ACAACGCCCAATTTTTGCACATTTACGCCTACGTTCCGCGCTTCATGTAT
TGTTATTCTGGCCGTCTTCGTTTTCCGCGTCTGCTTGTGGTCGTAATTTT
CTTGCTGTCAATGCTGGCTGTTTTCGACTACGCCATGCACAGTTCGTCAA
CCGTGCGCACGCACAGCAAGCAAATCGCATCGTGCGGTCGCCTCCAAAGT
AGTGGCGCTCATGCAATCACTGTGCACTTCATGACTTTAAACACGTTCAT
CCGCCCAATCGGTGTCGGGACAGCAGATTTCAAGGACGAACGCCTTGACG
ACTTGGCGCACGTGCTGCGTTCGTTTGATGTCATTTGCTTCCAGGAGCTC
TTCAATTGGAGTGGATATCGCAAAGTAAAGTTTCTTCAACAACTGGCAAA
GCACTATGGTTTCATCTATCACACAACGACCCCGTCGCCTGGTTTCAGGG
GGCTTTTTTCCTATCCCCCCAAGTTAATTGACGGCGGCTTAGTCATAGCG
TCGCGTTTTCAGATTCTTCGCACAGACTACCAAATCTACTCTCGAGCAAA
CTTCCATTCCATTGATTTCATAGTTGCCAAGGGCGCCCTGTATGCTCAGA
TTGCCGTTCCAATGCCGAATTCCAGCAGCTGCGCCGTCAACGTGTTTACC
ACGCACATGCAAGCAAGCAATGGATTGAGTGTCGATTTCAGCGCCACCCG
CCACGCCCAGCTCGAACAGCTGCTTCACTTTGTGCGACAGAAAACACAGC
CCGACCCAAGTGTCCCAATCATACTTGCGGGAGATTTCAACGTCAACGGC
CGTCGCGCATGTGATGATTCATCTTCTTCGCACGAATACGAGCAGATGAT
GTCTGTTCTTCGAAAAATACGCCAATTTTCTCCACTCCAAGATATTCTGT
ACGAAGCAAGCGGGCACGAGCATCCGGTGACTGGCGCTGGCGGCCTTTAC
GGAGACACGCAGAAAAACGAACGCCTCGACTACATCTTCTTCAGCCCTGG
AGCCAGACGCCGAGCAACGTCAGGGTGCAATGTCACAACTATCCCGGCTT
CGGTTCGAGTTCAGCCATTGCGAGTGTCTCAGAGACCATACCGCACTTTA
AGTGACCACTACGCTGTGGTTTCCAACTTCAGATTTGAACAAACAACAAA
TCTGGGTCACAGACCATGCGGCGTGGCTCTACTCGTTTGA
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