Gvermi11939.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11939.t1
Unique NameGvermi11939.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length120
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2671540..2671899 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706710.1
Preferred nameZNF593
PFAMszf-C2H2_jaz
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01875,ko:K14821
KEGG ReactionR03662,R08218
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0000054,GO:0000055,GO:0000278,GO:0000281,GO:0000282,GO:0000910,GO:0000981,GO:0003674,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006355,GO:0006357,GO:0006403,GO:0006405,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0007049,GO:0007163,GO:0008104,GO:0008150,GO:0008270,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0015031,GO:0015833,GO:0015931,GO:0019219,GO:0019222,GO:0022402,GO:0022613,GO:0030010,GO:0030684,GO:0030687,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031503,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033750,GO:0034613,GO:0042254,GO:0042886,GO:0043021,GO:0043023,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043392,GO:0044085,GO:0044092,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044877,GO:0045184,GO:0045893,GO:0045935,GO:0045944,GO:0046872,GO:0046907,GO:0046914,GO:0048518,GO:0048522,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051098,GO:0051100,GO:0051101,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051254,GO:0051301,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060255,GO:0061640,GO:0065007,GO:0065009,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071705,GO:0071840,GO:0080090,GO:0140110,GO:1902680,GO:1903025,GO:1903026,GO:1903047,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2000677,GO:2000678,GO:2001141
Evalue7.92e-26
EggNOG OGsCOG5112@1|root,KOG3408@2759|Eukaryota
EC6.1.1.11
Descriptionribosomal large subunit binding
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03009,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11939Gvermi11939Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2671540..2671899 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11939.t1.stop1Gvermi11939.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2671540..2671542 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11939.t1.CDS1Gvermi11939.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2671540..2671899 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11939.t1.exon1Gvermi11939.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2671540..2671899 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11939.t1.start1Gvermi11939.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2671897..2671899 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11939.t1Gvermi11939.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2671540..2671899 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11939.t1 ID=Gvermi11939.t1|Name=Gvermi11939.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=120bp
MGSGTGRVTKKKGSNKRSRRKRTLARALDQICDDLNGDGQFSEQRMQRLP
VDFDLPGLGQFYCVHCARYFICANVLAAHKKTKKHKFRVRELKHKPYSQA
EAEAAAGMAPPDNGASTRV*
back to top

spliced messenger RNA

>Gvermi11939.t1 ID=Gvermi11939.t1|Name=Gvermi11939.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=360bp|location=Sequence derived from alignment at ScGOVlb_3404:2671540..2671899- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTCGGGCACGGGGCGCGTAACCAAGAAAAAGGGCAGCAACAAGCG
CTCGCGACGAAAGCGCACGCTGGCGCGCGCTTTGGACCAGATCTGCGACG
ACCTGAACGGAGACGGCCAATTCAGTGAGCAGCGCATGCAGCGCCTGCCC
GTCGACTTTGACCTTCCTGGACTCGGCCAGTTTTACTGCGTGCACTGCGC
GCGCTACTTTATTTGCGCCAATGTTCTTGCAGCGCACAAGAAGACGAAAA
AGCACAAGTTCAGAGTGAGGGAGCTCAAACACAAGCCCTACTCGCAGGCC
GAGGCGGAGGCAGCTGCGGGCATGGCTCCGCCCGACAATGGCGCATCTAC
TCGTGTATGA
back to top

protein sequence of Gvermi11939.t1

>Gvermi11939.t1 ID=Gvermi11939.t1|Name=Gvermi11939.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=120bp
MGSGTGRVTKKKGSNKRSRRKRTLARALDQICDDLNGDGQFSEQRMQRLP
VDFDLPGLGQFYCVHCARYFICANVLAAHKKTKKHKFRVRELKHKPYSQA
EAEAAAGMAPPDNGASTRV*
back to top

mRNA from alignment at ScGOVlb_3404:2671540..2671899-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11939.t1 ID=Gvermi11939.t1|Name=Gvermi11939.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=360bp|location=Sequence derived from alignment at ScGOVlb_3404:2671540..2671899- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCTCGGGCACGGGGCGCGTAACCAAGAAAAAGGGCAGCAACAAGCG
CTCGCGACGAAAGCGCACGCTGGCGCGCGCTTTGGACCAGATCTGCGACG
ACCTGAACGGAGACGGCCAATTCAGTGAGCAGCGCATGCAGCGCCTGCCC
GTCGACTTTGACCTTCCTGGACTCGGCCAGTTTTACTGCGTGCACTGCGC
GCGCTACTTTATTTGCGCCAATGTTCTTGCAGCGCACAAGAAGACGAAAA
AGCACAAGTTCAGAGTGAGGGAGCTCAAACACAAGCCCTACTCGCAGGCC
GAGGCGGAGGCAGCTGCGGGCATGGCTCCGCCCGACAATGGCGCATCTAC
TCGTGTATGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:2671540..2671899-

>Gvermi11939.t1 ID=Gvermi11939.t1|Name=Gvermi11939.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=360bp|location=Sequence derived from alignment at ScGOVlb_3404:2671540..2671899- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCTCGGGCACGGGGCGCGTAACCAAGAAAAAGGGCAGCAACAAGCG
CTCGCGACGAAAGCGCACGCTGGCGCGCGCTTTGGACCAGATCTGCGACG
ACCTGAACGGAGACGGCCAATTCAGTGAGCAGCGCATGCAGCGCCTGCCC
GTCGACTTTGACCTTCCTGGACTCGGCCAGTTTTACTGCGTGCACTGCGC
GCGCTACTTTATTTGCGCCAATGTTCTTGCAGCGCACAAGAAGACGAAAA
AGCACAAGTTCAGAGTGAGGGAGCTCAAACACAAGCCCTACTCGCAGGCC
GAGGCGGAGGCAGCTGCGGGCATGGCTCCGCCCGACAATGGCGCATCTAC
TCGTGTATGA
back to top