Gvermi11937.t3 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11937.t3
Unique NameGvermi11937.t3
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length333
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2656824..2657890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709329.1
PFAMsChromo,FHA,FYRN,Forkhead,Helicase_C,SNF2_N
Max annot lvl2759|Eukaryota
KEGG koko:K08869,ko:K09365,ko:K09400,ko:K09408,ko:K11367
KEGG Pathwayko01521,ko04062,ko04068,ko04137,ko04151,ko04152,ko04211,ko04212,ko04213,ko04218,ko04722,ko04917,ko05213,ko05223,map01521,map04062,map04068,map04137,map04151,map04152,map04211,map04212,map04213,map04218,map04722,map04917,map05213,map05223
KEGG ModuleM00676
Evalue4.65e-32
EggNOG OGsCOG0553@1|root,COG5025@1|root,KOG0384@2759|Eukaryota,KOG2294@2759|Eukaryota
EC3.6.4.12
Descriptionsequence-specific DNA binding
COG categoryK
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03000,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11937Gvermi11937Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2656224..2659982 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11937.t3Gvermi11937.t3Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2656824..2657890 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11937.t3.start1Gvermi11937.t3.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2656824..2656826 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11937.t3.CDS1Gvermi11937.t3.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2656824..2657812 +
Gvermi11937.t3.CDS2Gvermi11937.t3.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2657881..2657890 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11937.t3.exon1Gvermi11937.t3.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2656824..2657812 +
Gvermi11937.t3.exon2Gvermi11937.t3.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2657881..2657890 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11937.t3.intron1Gvermi11937.t3.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 2657813..2657880 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11937.t3.stop1Gvermi11937.t3.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2657888..2657890 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11937.t3 ID=Gvermi11937.t3|Name=Gvermi11937.t3|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=333bp
MMRFGYGRWRKILAETSSRLAERQPDELVPVARTFVARCYLHARPGVEQK
ALMDILRRHPVQLFDGDERLVKREIEELLEHAKSLIEPNERRKYVRWARK
LRLLSRLHDVHDHPSLQRLRAGELRVLTPPPALYWTSNDDADFIIGSYRH
GYGAIEAIRQDLQLAFFKRYAQPSTGKKTITPVKSEGVAHSANPDAAHMD
MDDDDDDDENDHDPDKDEDDRHALSMNEDVDDENMHELPVHKRKKRPKLG
HAQQSSSLKEEAQLAMTAALAAAGSAHQSLLNTPHSQDDSDMSPLDGNAV
EAVTAAVQSRLSTHENGTHGSKSNSKDDSARI*
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spliced messenger RNA

>Gvermi11937.t3 ID=Gvermi11937.t3|Name=Gvermi11937.t3|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=999bp|location=Sequence derived from alignment at ScGOVlb_3404:2656824..2657890+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCGCTTTGGCTACGGCCGCTGGCGCAAAATCCTCGCGGAGACCAG
CAGCCGCCTGGCGGAGCGCCAGCCCGACGAGCTGGTGCCCGTGGCGCGCA
CGTTTGTGGCCAGGTGCTACCTGCACGCGCGCCCGGGCGTGGAGCAGAAG
GCGCTCATGGACATTCTGCGCCGCCACCCCGTGCAGCTGTTTGACGGCGA
CGAGCGCCTGGTGAAGCGCGAAATTGAGGAGCTTTTGGAGCACGCCAAAT
CGCTCATTGAGCCAAATGAGAGGAGGAAGTACGTGCGCTGGGCGCGCAAG
CTGCGCCTGTTGAGCCGCCTGCACGATGTGCATGACCACCCCTCCTTACA
GCGCTTGCGCGCCGGTGAGTTGCGCGTGCTCACCCCGCCCCCGGCCTTGT
ACTGGACCTCCAACGACGATGCCGACTTTATCATTGGGTCCTACAGACAC
GGGTACGGCGCCATCGAGGCCATTCGGCAGGATCTTCAACTGGCGTTTTT
CAAGCGCTACGCACAGCCCTCAACTGGCAAGAAGACCATCACGCCAGTCA
AGAGTGAGGGCGTTGCGCACAGCGCCAACCCGGACGCCGCGCACATGgac
atggacgacgacgacgacgacgacgagaacgaccacgatccggacaagga
cgaggatgacCGCCACGCGCTCAGCATGAACGAAGACGTGGATGACGAGA
ACATGCACGAGTTGCCGGTGCACAAGCGCAAAAAGCGCCCCAAACTTGGT
CACGCGCAACAGTCGAGCTCGCTCAAAGAAGAGGCACAGCTTGCCATGAC
CGCCGCTCTTGCGGCCGCCGGTAGTGCGCACCAGTCACTGCTTAACACTC
CGCACTCGCAGGACGACTCGGACATGTCGCCGTTGGATGGCAATGCCGTT
GAGGCTGTCACGGCCGCTGTTCAGAGCCGTCTCAGCACGCACGAAAACGG
AACCCATGGGTCCAAGAGCAATTCGAAGGACGACTCGGCACGGATTTAA
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protein sequence of Gvermi11937.t3

>Gvermi11937.t3 ID=Gvermi11937.t3|Name=Gvermi11937.t3|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=333bp
MMRFGYGRWRKILAETSSRLAERQPDELVPVARTFVARCYLHARPGVEQK
ALMDILRRHPVQLFDGDERLVKREIEELLEHAKSLIEPNERRKYVRWARK
LRLLSRLHDVHDHPSLQRLRAGELRVLTPPPALYWTSNDDADFIIGSYRH
GYGAIEAIRQDLQLAFFKRYAQPSTGKKTITPVKSEGVAHSANPDAAHMD
MDDDDDDDENDHDPDKDEDDRHALSMNEDVDDENMHELPVHKRKKRPKLG
HAQQSSSLKEEAQLAMTAALAAAGSAHQSLLNTPHSQDDSDMSPLDGNAV
EAVTAAVQSRLSTHENGTHGSKSNSKDDSARI*
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mRNA from alignment at ScGOVlb_3404:2656824..2657890+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11937.t3 ID=Gvermi11937.t3|Name=Gvermi11937.t3|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1067bp|location=Sequence derived from alignment at ScGOVlb_3404:2656824..2657890+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGCGCTTTGGCTACGGCCGCTGGCGCAAAATCCTCGCGGAGACCAG
CAGCCGCCTGGCGGAGCGCCAGCCCGACGAGCTGGTGCCCGTGGCGCGCA
CGTTTGTGGCCAGGTGCTACCTGCACGCGCGCCCGGGCGTGGAGCAGAAG
GCGCTCATGGACATTCTGCGCCGCCACCCCGTGCAGCTGTTTGACGGCGA
CGAGCGCCTGGTGAAGCGCGAAATTGAGGAGCTTTTGGAGCACGCCAAAT
CGCTCATTGAGCCAAATGAGAGGAGGAAGTACGTGCGCTGGGCGCGCAAG
CTGCGCCTGTTGAGCCGCCTGCACGATGTGCATGACCACCCCTCCTTACA
GCGCTTGCGCGCCGGTGAGTTGCGCGTGCTCACCCCGCCCCCGGCCTTGT
ACTGGACCTCCAACGACGATGCCGACTTTATCATTGGGTCCTACAGACAC
GGGTACGGCGCCATCGAGGCCATTCGGCAGGATCTTCAACTGGCGTTTTT
CAAGCGCTACGCACAGCCCTCAACTGGCAAGAAGACCATCACGCCAGTCA
AGAGTGAGGGCGTTGCGCACAGCGCCAACCCGGACGCCGCGCACATGgac
atggacgacgacgacgacgacgacgagaacgaccacgatccggacaagga
cgaggatgacCGCCACGCGCTCAGCATGAACGAAGACGTGGATGACGAGA
ACATGCACGAGTTGCCGGTGCACAAGCGCAAAAAGCGCCCCAAACTTGGT
CACGCGCAACAGTCGAGCTCGCTCAAAGAAGAGGCACAGCTTGCCATGAC
CGCCGCTCTTGCGGCCGCCGGTAGTGCGCACCAGTCACTGCTTAACACTC
CGCACTCGCAGGACGACTCGGACATGTCGCCGTTGGATGGCAATGCCGTT
GAGGCTGTCACGGCCGCTGTTCAGAGCCGTCTCAGCACGCACGAAAACGG
AACCCATGGGTCCAAGAGCAATTCGAAGGACGACTCGGCGTCCGACGCGG
AGAAAAGAAAGCAAAAACGGCTTGTGCCGAAGAGGGGCCCGCGAATCGGC
AACGAAGACGGATTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2656824..2657890+

>Gvermi11937.t3 ID=Gvermi11937.t3|Name=Gvermi11937.t3|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=999bp|location=Sequence derived from alignment at ScGOVlb_3404:2656824..2657890+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGCGCTTTGGCTACGGCCGCTGGCGCAAAATCCTCGCGGAGACCAG
CAGCCGCCTGGCGGAGCGCCAGCCCGACGAGCTGGTGCCCGTGGCGCGCA
CGTTTGTGGCCAGGTGCTACCTGCACGCGCGCCCGGGCGTGGAGCAGAAG
GCGCTCATGGACATTCTGCGCCGCCACCCCGTGCAGCTGTTTGACGGCGA
CGAGCGCCTGGTGAAGCGCGAAATTGAGGAGCTTTTGGAGCACGCCAAAT
CGCTCATTGAGCCAAATGAGAGGAGGAAGTACGTGCGCTGGGCGCGCAAG
CTGCGCCTGTTGAGCCGCCTGCACGATGTGCATGACCACCCCTCCTTACA
GCGCTTGCGCGCCGGTGAGTTGCGCGTGCTCACCCCGCCCCCGGCCTTGT
ACTGGACCTCCAACGACGATGCCGACTTTATCATTGGGTCCTACAGACAC
GGGTACGGCGCCATCGAGGCCATTCGGCAGGATCTTCAACTGGCGTTTTT
CAAGCGCTACGCACAGCCCTCAACTGGCAAGAAGACCATCACGCCAGTCA
AGAGTGAGGGCGTTGCGCACAGCGCCAACCCGGACGCCGCGCACATGgac
atggacgacgacgacgacgacgacgagaacgaccacgatccggacaagga
cgaggatgacCGCCACGCGCTCAGCATGAACGAAGACGTGGATGACGAGA
ACATGCACGAGTTGCCGGTGCACAAGCGCAAAAAGCGCCCCAAACTTGGT
CACGCGCAACAGTCGAGCTCGCTCAAAGAAGAGGCACAGCTTGCCATGAC
CGCCGCTCTTGCGGCCGCCGGTAGTGCGCACCAGTCACTGCTTAACACTC
CGCACTCGCAGGACGACTCGGACATGTCGCCGTTGGATGGCAATGCCGTT
GAGGCTGTCACGGCCGCTGTTCAGAGCCGTCTCAGCACGCACGAAAACGG
AACCCATGGGTCCAAGAGCAATTCGAAGGACGACTCGGCACGGATTTAA
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