Gvermi11936.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11936.t1
Unique NameGvermi11936.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length435
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2654078..2655382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog71139.XP_010023866.1
PFAMsAmino_oxidase,CMAS,NAD_binding_8
Max annot lvl35493|Streptophyta
KEGG koko:K00574
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006629,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0008825,GO:0009987,GO:0016740,GO:0016741,GO:0030258,GO:0032259,GO:0044237,GO:0044238,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0071704
Evalue3.14e-100
EggNOG OGsCOG2230@1|root,2QSMW@2759|Eukaryota,37NYG@33090|Viridiplantae,3GBIW@35493|Streptophyta
EC2.1.1.79
Descriptionsynthase
COG categoryM
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11936Gvermi11936Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2654078..2655382 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11936.t1.start1Gvermi11936.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2654078..2654080 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11936.t1.CDS1Gvermi11936.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2654078..2655382 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11936.t1.exon1Gvermi11936.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2654078..2655382 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11936.t1.stop1Gvermi11936.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2655380..2655382 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11936.t1Gvermi11936.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2654078..2655382 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11936.t1 ID=Gvermi11936.t1|Name=Gvermi11936.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=435bp
MGSVPFVESVRAKFMKVADAFFRFFVVEFLSRGILKGHLTLEMADEKMRF
GELKASALSANHPVVTLCVQHPAQFFVRVATAADIGLAEAYMAGDIEASG
EQLLNLFKLLILNRDSAGLNAAQLTLSKLGCVFNRAAHVLRSNTVNGSSR
NIAAHYDLSNELFACFLGQSWTYSCAMFEEEDDLDTAQWRKLDTIMEKGM
IDESCHVLEVGCGWGEFAIRAAQRTGCRVTGITLSDEQLQLGRERVREAG
VEGRVQLLKMDYRELGTLGVKFDRMVSIEMIEAVGHEFLGRFFCEVGSVL
TAEAVAVIQVITTPEERYEEYRRSSDFIQKYIFPGGLCPSFEAVVSASAR
AGLSVEGAENVGPQYARTLRAWRARFERGVKEGAVAAAGFDGRFERMWRY
YLCYCEAGFGTRTLGVQQVVLSRAGNTAALPRAQ*
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spliced messenger RNA

>Gvermi11936.t1 ID=Gvermi11936.t1|Name=Gvermi11936.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1305bp|location=Sequence derived from alignment at ScGOVlb_3404:2654078..2655382+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGAGCGTGCCCTTTGTGGAGAGCGTCCGTGCAAAGTTCATGAAAGT
GGCCGATGCATTCTTTCGCTTTTTCGTCGTTGAGTTTCTCTCCAGGGGCA
TTCTCAAAGGGCACCTCACGCTTGAAATGGCCGATGAGAAAATGCGTTTT
GGCGAGTTGAAGGCATCGGCTCTCAGCGCAAACCATCCGGTGGTGACGCT
GTGTGTGCAGCACCCCGCGCAGTTCTTTGTGCGCGTGGCAACTGCCGCCG
ATATCGGTCTGGCGGAGGCGTACATGGCCGGTGACATTGAGGCCAGCGGT
GAGCAACTGCTCAATCTGTTCAAGCTGTTGATTTTGAATCGCGACAGCGC
CGGCCTCAACGCGGCGCAGTTGACGCTTTCCAAACTGGGGTGCGTGTTCA
ACCGCGCCGCTCATGTGTTGAGGAGTAACACGGTGAACGGGTCCTCGCGT
AACATCGCTGCGCATTACGACTTGTCAAACGAGCTGTTCGCGTGCTTTCT
CGGGCAGAGCTGGACGTACTCGTGCGCCATGTTTGAAGAGGAGGATGACC
TGGACACGGCGCAGTGGCGAAAGCTGGACACCATCATGGAAAAGGGTATG
ATCGACGAGAGTTGCCACGTGCTGGAGGTGGGGTGCGGGTGGGGCGAATT
CGCCATTCGCGCGGCGCAGAGGACAGGGTGTCGAGTGACGGGCATCACTC
TGTCCGACGAGCAGCTGCAGCTGGGTCGCGAGCGCGTGAGGGAGGCGGGC
GTGGAGGGGCGCGTGCAGCTGCTCAAGATGGATTACCGCGAGCTGGGCAC
GCTGGGAGTGAAGTTTGACCGCATGGTGTCCATCGAGATGATCGAGGCGG
TGGGGCACGAGTTCCTGGGGCGGTTTTTCTGCGAGGTGGGGTCGGTGCTG
ACTGCGGAGGCAGTGGCGGTGATTCAGGTGATCACGACGCCGGAGGAGCG
GTACGAGGAGTACCGGCGGTCGTCGGACTTCATCCAGAAGTACATATTCC
CGGGGGGGCTGTGCCCGAGCTTCGAGGCGGTGGTGAGCGCGTCGGCGCGG
GCGGGGCTGAGCGTGGAGGGGGCGGAGAACGTGGGGCCGCAGTACGCGAG
GACGCTGCGCGCGTGGCGGGCGCGCTTCGAGCGCGGCGTGAAGGAGGGCG
CGGTGGCGGCGGCGGGCTTTGACGGGCGCTTCGAGCGCATGTGGCGCTAC
TACCTGTGCTACTGCGAGGCGGGCTTCGGCACGCGCACGCTGGGCGTGCA
GCAGGTGGTGCTGAGCCGCGCGGGCAACAcggccgcgctgccgcgcgcgc
agtga
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protein sequence of Gvermi11936.t1

>Gvermi11936.t1 ID=Gvermi11936.t1|Name=Gvermi11936.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=435bp
MGSVPFVESVRAKFMKVADAFFRFFVVEFLSRGILKGHLTLEMADEKMRF
GELKASALSANHPVVTLCVQHPAQFFVRVATAADIGLAEAYMAGDIEASG
EQLLNLFKLLILNRDSAGLNAAQLTLSKLGCVFNRAAHVLRSNTVNGSSR
NIAAHYDLSNELFACFLGQSWTYSCAMFEEEDDLDTAQWRKLDTIMEKGM
IDESCHVLEVGCGWGEFAIRAAQRTGCRVTGITLSDEQLQLGRERVREAG
VEGRVQLLKMDYRELGTLGVKFDRMVSIEMIEAVGHEFLGRFFCEVGSVL
TAEAVAVIQVITTPEERYEEYRRSSDFIQKYIFPGGLCPSFEAVVSASAR
AGLSVEGAENVGPQYARTLRAWRARFERGVKEGAVAAAGFDGRFERMWRY
YLCYCEAGFGTRTLGVQQVVLSRAGNTAALPRAQ*
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mRNA from alignment at ScGOVlb_3404:2654078..2655382+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11936.t1 ID=Gvermi11936.t1|Name=Gvermi11936.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1305bp|location=Sequence derived from alignment at ScGOVlb_3404:2654078..2655382+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGGAGCGTGCCCTTTGTGGAGAGCGTCCGTGCAAAGTTCATGAAAGT
GGCCGATGCATTCTTTCGCTTTTTCGTCGTTGAGTTTCTCTCCAGGGGCA
TTCTCAAAGGGCACCTCACGCTTGAAATGGCCGATGAGAAAATGCGTTTT
GGCGAGTTGAAGGCATCGGCTCTCAGCGCAAACCATCCGGTGGTGACGCT
GTGTGTGCAGCACCCCGCGCAGTTCTTTGTGCGCGTGGCAACTGCCGCCG
ATATCGGTCTGGCGGAGGCGTACATGGCCGGTGACATTGAGGCCAGCGGT
GAGCAACTGCTCAATCTGTTCAAGCTGTTGATTTTGAATCGCGACAGCGC
CGGCCTCAACGCGGCGCAGTTGACGCTTTCCAAACTGGGGTGCGTGTTCA
ACCGCGCCGCTCATGTGTTGAGGAGTAACACGGTGAACGGGTCCTCGCGT
AACATCGCTGCGCATTACGACTTGTCAAACGAGCTGTTCGCGTGCTTTCT
CGGGCAGAGCTGGACGTACTCGTGCGCCATGTTTGAAGAGGAGGATGACC
TGGACACGGCGCAGTGGCGAAAGCTGGACACCATCATGGAAAAGGGTATG
ATCGACGAGAGTTGCCACGTGCTGGAGGTGGGGTGCGGGTGGGGCGAATT
CGCCATTCGCGCGGCGCAGAGGACAGGGTGTCGAGTGACGGGCATCACTC
TGTCCGACGAGCAGCTGCAGCTGGGTCGCGAGCGCGTGAGGGAGGCGGGC
GTGGAGGGGCGCGTGCAGCTGCTCAAGATGGATTACCGCGAGCTGGGCAC
GCTGGGAGTGAAGTTTGACCGCATGGTGTCCATCGAGATGATCGAGGCGG
TGGGGCACGAGTTCCTGGGGCGGTTTTTCTGCGAGGTGGGGTCGGTGCTG
ACTGCGGAGGCAGTGGCGGTGATTCAGGTGATCACGACGCCGGAGGAGCG
GTACGAGGAGTACCGGCGGTCGTCGGACTTCATCCAGAAGTACATATTCC
CGGGGGGGCTGTGCCCGAGCTTCGAGGCGGTGGTGAGCGCGTCGGCGCGG
GCGGGGCTGAGCGTGGAGGGGGCGGAGAACGTGGGGCCGCAGTACGCGAG
GACGCTGCGCGCGTGGCGGGCGCGCTTCGAGCGCGGCGTGAAGGAGGGCG
CGGTGGCGGCGGCGGGCTTTGACGGGCGCTTCGAGCGCATGTGGCGCTAC
TACCTGTGCTACTGCGAGGCGGGCTTCGGCACGCGCACGCTGGGCGTGCA
GCAGGTGGTGCTGAGCCGCGCGGGCAACAcggccgcgctgccgcgcgcgc
agtga
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2654078..2655382+

>Gvermi11936.t1 ID=Gvermi11936.t1|Name=Gvermi11936.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1305bp|location=Sequence derived from alignment at ScGOVlb_3404:2654078..2655382+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGGAGCGTGCCCTTTGTGGAGAGCGTCCGTGCAAAGTTCATGAAAGT
GGCCGATGCATTCTTTCGCTTTTTCGTCGTTGAGTTTCTCTCCAGGGGCA
TTCTCAAAGGGCACCTCACGCTTGAAATGGCCGATGAGAAAATGCGTTTT
GGCGAGTTGAAGGCATCGGCTCTCAGCGCAAACCATCCGGTGGTGACGCT
GTGTGTGCAGCACCCCGCGCAGTTCTTTGTGCGCGTGGCAACTGCCGCCG
ATATCGGTCTGGCGGAGGCGTACATGGCCGGTGACATTGAGGCCAGCGGT
GAGCAACTGCTCAATCTGTTCAAGCTGTTGATTTTGAATCGCGACAGCGC
CGGCCTCAACGCGGCGCAGTTGACGCTTTCCAAACTGGGGTGCGTGTTCA
ACCGCGCCGCTCATGTGTTGAGGAGTAACACGGTGAACGGGTCCTCGCGT
AACATCGCTGCGCATTACGACTTGTCAAACGAGCTGTTCGCGTGCTTTCT
CGGGCAGAGCTGGACGTACTCGTGCGCCATGTTTGAAGAGGAGGATGACC
TGGACACGGCGCAGTGGCGAAAGCTGGACACCATCATGGAAAAGGGTATG
ATCGACGAGAGTTGCCACGTGCTGGAGGTGGGGTGCGGGTGGGGCGAATT
CGCCATTCGCGCGGCGCAGAGGACAGGGTGTCGAGTGACGGGCATCACTC
TGTCCGACGAGCAGCTGCAGCTGGGTCGCGAGCGCGTGAGGGAGGCGGGC
GTGGAGGGGCGCGTGCAGCTGCTCAAGATGGATTACCGCGAGCTGGGCAC
GCTGGGAGTGAAGTTTGACCGCATGGTGTCCATCGAGATGATCGAGGCGG
TGGGGCACGAGTTCCTGGGGCGGTTTTTCTGCGAGGTGGGGTCGGTGCTG
ACTGCGGAGGCAGTGGCGGTGATTCAGGTGATCACGACGCCGGAGGAGCG
GTACGAGGAGTACCGGCGGTCGTCGGACTTCATCCAGAAGTACATATTCC
CGGGGGGGCTGTGCCCGAGCTTCGAGGCGGTGGTGAGCGCGTCGGCGCGG
GCGGGGCTGAGCGTGGAGGGGGCGGAGAACGTGGGGCCGCAGTACGCGAG
GACGCTGCGCGCGTGGCGGGCGCGCTTCGAGCGCGGCGTGAAGGAGGGCG
CGGTGGCGGCGGCGGGCTTTGACGGGCGCTTCGAGCGCATGTGGCGCTAC
TACCTGTGCTACTGCGAGGCGGGCTTCGGCACGCGCACGCTGGGCGTGCA
GCAGGTGGTGCTGAGCCGCGCGGGCAACAcggccgcgctgccgcgcgcgc
agtga
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