Gvermi11935.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11935.t1
Unique NameGvermi11935.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length328
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2650986..2651969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11935Gvermi11935Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2650986..2651969 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11935.t1.start1Gvermi11935.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2650986..2650988 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11935.t1.CDS1Gvermi11935.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2650986..2651969 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11935.t1.exon1Gvermi11935.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2650986..2651969 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11935.t1.stop1Gvermi11935.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2651967..2651969 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11935.t1Gvermi11935.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2650986..2651969 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11935.t1 ID=Gvermi11935.t1|Name=Gvermi11935.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=328bp
MAAGKSDIVRKRLMSAGLSLDECIKYVDILRSFLSARMTKIQFEDQMTKL
LPKDKIHVHNSIIQDILFRAQQKRDGLRDLPVLFPSKKPVPSSRPPVKIP
NGPLKKAAPPKAGIKRPHDDLDPITVKGTPSDDTSVQTAKRQKVRPAAPK
KPPAEIDKVKPVKVPEKISPKPRRPKPPEKSPSLPPPSPGRPAAARTAPS
KLAPMVPSTELPTYDMPFQPLQPGCGIDYELFLKLRHRMKRIAVEQAGMG
ELQDDAVGAMVHAIEMRVKWLLQLAVRQRRARNNIVPRDNKQCGPVRGCD
LREPAKRNPAILGEERVMDLERLSMLL*
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spliced messenger RNA

>Gvermi11935.t1 ID=Gvermi11935.t1|Name=Gvermi11935.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=984bp|location=Sequence derived from alignment at ScGOVlb_3404:2650986..2651969+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGCAGGCAAGTCAGATATCGTCCGAAAGCGTCTCATGTCGGCCGG
TCTGTCGCTGGATGAATGTATCAAATACGTGGACATCCTACGCTCGTTTC
TCAGCGCTCGCATGACCAAAATTCAGTTCGAAGATCAGATGACCAAACTG
CTACCCAAGGACAAGATTCATGTACATAACTCCATCATCCAAGACATCTT
GTTCAGAGCCCAGCAAAAACGCGATGGCTTGCGAGATCTTCCAGTCCTTT
TCCCTTCCAAGAAGCCAGTCCCGTCTTCTAGGCCACCCGTCAAAATACCA
AATGGTCCGCTCAAGAAGGCTGCCCCCCCCAAGGCCGGCATCAAGCGACC
CCATGACGATCTCGACCCCATCACCGTCAAAGGCACGCCAAGCGACGATA
CAAGCGTGCAAACCGCCAAGCGTCAAAAGGTCCGCCCAGCAGCTCCGAAG
AAACCCCCCGCAGAAATTGACAAAGTCAAGCCCGTCAAAGTCCCGGAGAA
GATATCGCCGAAGCCAAGGAGACCAAAGCCTCCAGAGAAATCTCCAAGCC
TCCCTCCACCGTCGCCGGGCCGGCCGGCAGCAGCGCGCACTGCGCCGTCC
AAGCTGGCACCCATGGTTCCTTCAACCGAGCTTCCGACGTACGACATGCC
GTTTCAGCCGCTTCAACCGGGCTGTGGTATTGACTACGAGTTGTTCCTCA
AGCTGCGGCACCGAATGAAGCGGATAGCGGTAGAACAGGCCGGCATGGGC
GAACTTCAGGACGACGCCGTCGGCGCCATGGTTCATGCGATCGAGATGCG
TGTGAAATGGCTGCTGCAGCTGGCAGTGCGACAACGGAGGGCGCGCAACA
ATATTGTACCCCGCGACAACAAGCAGTGTGGGCCCGTGAGAGGTTGCGAC
TTGCGGGAACCCGCGAAACGGAACCCCGCCATTCTCGGGGAGGAGCGGGT
GATGGATTTAGAGCGTTTGTCGATGTTGCTTTGA
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protein sequence of Gvermi11935.t1

>Gvermi11935.t1 ID=Gvermi11935.t1|Name=Gvermi11935.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=328bp
MAAGKSDIVRKRLMSAGLSLDECIKYVDILRSFLSARMTKIQFEDQMTKL
LPKDKIHVHNSIIQDILFRAQQKRDGLRDLPVLFPSKKPVPSSRPPVKIP
NGPLKKAAPPKAGIKRPHDDLDPITVKGTPSDDTSVQTAKRQKVRPAAPK
KPPAEIDKVKPVKVPEKISPKPRRPKPPEKSPSLPPPSPGRPAAARTAPS
KLAPMVPSTELPTYDMPFQPLQPGCGIDYELFLKLRHRMKRIAVEQAGMG
ELQDDAVGAMVHAIEMRVKWLLQLAVRQRRARNNIVPRDNKQCGPVRGCD
LREPAKRNPAILGEERVMDLERLSMLL*
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mRNA from alignment at ScGOVlb_3404:2650986..2651969+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11935.t1 ID=Gvermi11935.t1|Name=Gvermi11935.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=984bp|location=Sequence derived from alignment at ScGOVlb_3404:2650986..2651969+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCAGCAGGCAAGTCAGATATCGTCCGAAAGCGTCTCATGTCGGCCGG
TCTGTCGCTGGATGAATGTATCAAATACGTGGACATCCTACGCTCGTTTC
TCAGCGCTCGCATGACCAAAATTCAGTTCGAAGATCAGATGACCAAACTG
CTACCCAAGGACAAGATTCATGTACATAACTCCATCATCCAAGACATCTT
GTTCAGAGCCCAGCAAAAACGCGATGGCTTGCGAGATCTTCCAGTCCTTT
TCCCTTCCAAGAAGCCAGTCCCGTCTTCTAGGCCACCCGTCAAAATACCA
AATGGTCCGCTCAAGAAGGCTGCCCCCCCCAAGGCCGGCATCAAGCGACC
CCATGACGATCTCGACCCCATCACCGTCAAAGGCACGCCAAGCGACGATA
CAAGCGTGCAAACCGCCAAGCGTCAAAAGGTCCGCCCAGCAGCTCCGAAG
AAACCCCCCGCAGAAATTGACAAAGTCAAGCCCGTCAAAGTCCCGGAGAA
GATATCGCCGAAGCCAAGGAGACCAAAGCCTCCAGAGAAATCTCCAAGCC
TCCCTCCACCGTCGCCGGGCCGGCCGGCAGCAGCGCGCACTGCGCCGTCC
AAGCTGGCACCCATGGTTCCTTCAACCGAGCTTCCGACGTACGACATGCC
GTTTCAGCCGCTTCAACCGGGCTGTGGTATTGACTACGAGTTGTTCCTCA
AGCTGCGGCACCGAATGAAGCGGATAGCGGTAGAACAGGCCGGCATGGGC
GAACTTCAGGACGACGCCGTCGGCGCCATGGTTCATGCGATCGAGATGCG
TGTGAAATGGCTGCTGCAGCTGGCAGTGCGACAACGGAGGGCGCGCAACA
ATATTGTACCCCGCGACAACAAGCAGTGTGGGCCCGTGAGAGGTTGCGAC
TTGCGGGAACCCGCGAAACGGAACCCCGCCATTCTCGGGGAGGAGCGGGT
GATGGATTTAGAGCGTTTGTCGATGTTGCTTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2650986..2651969+

>Gvermi11935.t1 ID=Gvermi11935.t1|Name=Gvermi11935.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=984bp|location=Sequence derived from alignment at ScGOVlb_3404:2650986..2651969+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCAGCAGGCAAGTCAGATATCGTCCGAAAGCGTCTCATGTCGGCCGG
TCTGTCGCTGGATGAATGTATCAAATACGTGGACATCCTACGCTCGTTTC
TCAGCGCTCGCATGACCAAAATTCAGTTCGAAGATCAGATGACCAAACTG
CTACCCAAGGACAAGATTCATGTACATAACTCCATCATCCAAGACATCTT
GTTCAGAGCCCAGCAAAAACGCGATGGCTTGCGAGATCTTCCAGTCCTTT
TCCCTTCCAAGAAGCCAGTCCCGTCTTCTAGGCCACCCGTCAAAATACCA
AATGGTCCGCTCAAGAAGGCTGCCCCCCCCAAGGCCGGCATCAAGCGACC
CCATGACGATCTCGACCCCATCACCGTCAAAGGCACGCCAAGCGACGATA
CAAGCGTGCAAACCGCCAAGCGTCAAAAGGTCCGCCCAGCAGCTCCGAAG
AAACCCCCCGCAGAAATTGACAAAGTCAAGCCCGTCAAAGTCCCGGAGAA
GATATCGCCGAAGCCAAGGAGACCAAAGCCTCCAGAGAAATCTCCAAGCC
TCCCTCCACCGTCGCCGGGCCGGCCGGCAGCAGCGCGCACTGCGCCGTCC
AAGCTGGCACCCATGGTTCCTTCAACCGAGCTTCCGACGTACGACATGCC
GTTTCAGCCGCTTCAACCGGGCTGTGGTATTGACTACGAGTTGTTCCTCA
AGCTGCGGCACCGAATGAAGCGGATAGCGGTAGAACAGGCCGGCATGGGC
GAACTTCAGGACGACGCCGTCGGCGCCATGGTTCATGCGATCGAGATGCG
TGTGAAATGGCTGCTGCAGCTGGCAGTGCGACAACGGAGGGCGCGCAACA
ATATTGTACCCCGCGACAACAAGCAGTGTGGGCCCGTGAGAGGTTGCGAC
TTGCGGGAACCCGCGAAACGGAACCCCGCCATTCTCGGGGAGGAGCGGGT
GATGGATTTAGAGCGTTTGTCGATGTTGCTTTGA
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