Gvermi11934.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11934.t1
Unique NameGvermi11934.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length232
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2648692..2649387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FQ20
Preferred nameCHLM
PFAMsMg-por_mtran_C
Max annot lvl2759|Eukaryota
KEGG rclassRC00003,RC00460
KEGG koko:K03428
KEGG ReactionR04237
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008757,GO:0009058,GO:0009507,GO:0009526,GO:0009534,GO:0009536,GO:0009579,GO:0009941,GO:0009987,GO:0015994,GO:0015995,GO:0016740,GO:0016741,GO:0018130,GO:0019438,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032259,GO:0033013,GO:0033014,GO:0034641,GO:0042440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046148,GO:0046406,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue1.64e-95
EggNOG OGsCOG2227@1|root,KOG1270@2759|Eukaryota
EC2.1.1.11
Descriptionhexaprenyldihydroxybenzoate methyltransferase activity
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11934Gvermi11934Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2648692..2649387 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11934.t1.stop1Gvermi11934.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2648692..2648694 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11934.t1.CDS1Gvermi11934.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2648692..2649387 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11934.t1.exon1Gvermi11934.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2648692..2649387 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11934.t1.start1Gvermi11934.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2649385..2649387 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11934.t1Gvermi11934.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2648692..2649387 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11934.t1 ID=Gvermi11934.t1|Name=Gvermi11934.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=232bp
MVTRVDDKAVVTEYFNNTGFDRWNRIYSEDGEVNSVQRDIREGHAQTVDK
ILQWVDDDGDARGMRFCDAGCGVGSLTLPLLQRGAVVSASDISDAMVREA
ERRGTQLMADKMGNVSFSTLDLESIVGSYDTVCCIDVMIHYPTEKAVQMI
AKLAERSERRVIISFAPRTFVLSLLKKVGELFPGPSKATRAYLHDEADIR
RALQKCGLTVRRTEFTGTRFYFSRLLEAVKE*
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spliced messenger RNA

>Gvermi11934.t1 ID=Gvermi11934.t1|Name=Gvermi11934.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=696bp|location=Sequence derived from alignment at ScGOVlb_3404:2648692..2649387- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGACGCGCGTGGACGACAAGGCGGTCGTCACCGAGTACTTCAACAA
CACCGGCTTCGATCGCTGGAACCGCATCTACTCGGAGGACGGCGAGGTGA
ACAGCGTGCAGCGCGACATTCGCGAGGGACACGCGCAGACGGTGGACAAA
ATCCTGCAGTGGGTGGACGACGACGGCGACGCGCGCGGCATGCGCTTCTG
CGACGCGGGCTGCGGCGTGGGGTCGCTCACGCTGCCGCTGCTGCAGCGCG
GGGCGGTGGTGTCGGCGTCGGACATCAGCGACGCCATGGTGAGGGAGGCC
GAGCGGCGCGGCACGCAGCTCATGGCGGACAAAATGGGCAATGTGTCCTT
TTCTACGCTGGACCTCGAGTCCATTGTGGGCAGCTACGACACGGTGTGCT
GCATTGATGTGATGATTCACTACCCCACGGAGAAGGCGGTGCAGATGATT
GCCAAGCTTGCGGAGAGAAGCGAGCGCAGGGTGATTATTAGTTTTGCACC
GAGGACATTTGTGCTGTCGCTGTTGAAAAAGGTGGGAGAGTTGTTCCCGG
GGCCGAGTAAGGCGACCAGGGCGTATCTGCATGACGAGGCAGACATTCGG
CGCGCGCTGCAAAAGTGCGGGCTCACGGTGCGACGAACGGAATTCACCGG
AACGCGCTTTTATTTCTCGCGCCTGCTGGAGGCAGTCAAGGAGTAG
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protein sequence of Gvermi11934.t1

>Gvermi11934.t1 ID=Gvermi11934.t1|Name=Gvermi11934.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=232bp
MVTRVDDKAVVTEYFNNTGFDRWNRIYSEDGEVNSVQRDIREGHAQTVDK
ILQWVDDDGDARGMRFCDAGCGVGSLTLPLLQRGAVVSASDISDAMVREA
ERRGTQLMADKMGNVSFSTLDLESIVGSYDTVCCIDVMIHYPTEKAVQMI
AKLAERSERRVIISFAPRTFVLSLLKKVGELFPGPSKATRAYLHDEADIR
RALQKCGLTVRRTEFTGTRFYFSRLLEAVKE*
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mRNA from alignment at ScGOVlb_3404:2648692..2649387-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11934.t1 ID=Gvermi11934.t1|Name=Gvermi11934.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=696bp|location=Sequence derived from alignment at ScGOVlb_3404:2648692..2649387- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGACGCGCGTGGACGACAAGGCGGTCGTCACCGAGTACTTCAACAA
CACCGGCTTCGATCGCTGGAACCGCATCTACTCGGAGGACGGCGAGGTGA
ACAGCGTGCAGCGCGACATTCGCGAGGGACACGCGCAGACGGTGGACAAA
ATCCTGCAGTGGGTGGACGACGACGGCGACGCGCGCGGCATGCGCTTCTG
CGACGCGGGCTGCGGCGTGGGGTCGCTCACGCTGCCGCTGCTGCAGCGCG
GGGCGGTGGTGTCGGCGTCGGACATCAGCGACGCCATGGTGAGGGAGGCC
GAGCGGCGCGGCACGCAGCTCATGGCGGACAAAATGGGCAATGTGTCCTT
TTCTACGCTGGACCTCGAGTCCATTGTGGGCAGCTACGACACGGTGTGCT
GCATTGATGTGATGATTCACTACCCCACGGAGAAGGCGGTGCAGATGATT
GCCAAGCTTGCGGAGAGAAGCGAGCGCAGGGTGATTATTAGTTTTGCACC
GAGGACATTTGTGCTGTCGCTGTTGAAAAAGGTGGGAGAGTTGTTCCCGG
GGCCGAGTAAGGCGACCAGGGCGTATCTGCATGACGAGGCAGACATTCGG
CGCGCGCTGCAAAAGTGCGGGCTCACGGTGCGACGAACGGAATTCACCGG
AACGCGCTTTTATTTCTCGCGCCTGCTGGAGGCAGTCAAGGAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2648692..2649387-

>Gvermi11934.t1 ID=Gvermi11934.t1|Name=Gvermi11934.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=696bp|location=Sequence derived from alignment at ScGOVlb_3404:2648692..2649387- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGACGCGCGTGGACGACAAGGCGGTCGTCACCGAGTACTTCAACAA
CACCGGCTTCGATCGCTGGAACCGCATCTACTCGGAGGACGGCGAGGTGA
ACAGCGTGCAGCGCGACATTCGCGAGGGACACGCGCAGACGGTGGACAAA
ATCCTGCAGTGGGTGGACGACGACGGCGACGCGCGCGGCATGCGCTTCTG
CGACGCGGGCTGCGGCGTGGGGTCGCTCACGCTGCCGCTGCTGCAGCGCG
GGGCGGTGGTGTCGGCGTCGGACATCAGCGACGCCATGGTGAGGGAGGCC
GAGCGGCGCGGCACGCAGCTCATGGCGGACAAAATGGGCAATGTGTCCTT
TTCTACGCTGGACCTCGAGTCCATTGTGGGCAGCTACGACACGGTGTGCT
GCATTGATGTGATGATTCACTACCCCACGGAGAAGGCGGTGCAGATGATT
GCCAAGCTTGCGGAGAGAAGCGAGCGCAGGGTGATTATTAGTTTTGCACC
GAGGACATTTGTGCTGTCGCTGTTGAAAAAGGTGGGAGAGTTGTTCCCGG
GGCCGAGTAAGGCGACCAGGGCGTATCTGCATGACGAGGCAGACATTCGG
CGCGCGCTGCAAAAGTGCGGGCTCACGGTGCGACGAACGGAATTCACCGG
AACGCGCTTTTATTTCTCGCGCCTGCTGGAGGCAGTCAAGGAGTAG
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