Gvermi11931.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11931.t1
Unique NameGvermi11931.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length423
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2640523..2641791 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog323098.Nwi_0616
PFAMsPirin,Pirin_C
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K06911
Evalue5.44e-19
EggNOG OGsCOG1741@1|root,COG1741@2|Bacteria,1MWIP@1224|Proteobacteria,2TRHR@28211|Alphaproteobacteria,3JUW9@41294|Bradyrhizobiaceae
DescriptionPirin C-terminal cupin domain
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11931Gvermi11931Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2640523..2641791 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11931.t1.stop1Gvermi11931.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2640523..2640525 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11931.t1.CDS1Gvermi11931.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2640523..2641791 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11931.t1.exon1Gvermi11931.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2640523..2641791 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11931.t1.start1Gvermi11931.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2641789..2641791 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11931.t1Gvermi11931.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2640523..2641791 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11931.t1 ID=Gvermi11931.t1|Name=Gvermi11931.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=423bp
MQSPQTYEPQHRPVSIITSLERAAHFFLPRRHKTRRAKTATVSESVPRPD
AIPTQPARTVSSLVSLCRELNADGLGVRATASSVHPSSISPFLQLEHCGP
KHILPHASPGIDTPRCGQQCLTFVVQGQLRYRDSCANNVLLNAGSASLLT
AGSGLVVSHMLHGPTMEYISVWINIPRNLKAAPPHCSYSFSPACSVIGSA
HASAQIRVLAAPRRNSIDKLDSPAKNVSHTPNYSHSSVQLETHAGHAAVY
DVRMHPKSQLVLNPETERAFVYVYRGSARVGQSTVVEEGQFAVLSEHAHL
PILIRSAGADAEHNSHRHRDWNDFETFVEDGCWCIVLAGDPIMEPVSMLS
SGIVACTPQEIRKAFQEYRCGSLGTCSPSAVQRTHLHSAIDDFYDSTSEH
EINNVCPDPQNDSELALGELDA*
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spliced messenger RNA

>Gvermi11931.t1 ID=Gvermi11931.t1|Name=Gvermi11931.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1269bp|location=Sequence derived from alignment at ScGOVlb_3404:2640523..2641791- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAATCCCCTCAAACCTACGAACCTCAGCACAGACCGGTCTCCATTAT
CACCTCCTTGGAACGTGCCGCCCACTTCTTCCTACCACGTCGCCACAAAA
CCCGTCGTGCCAAGACTGCTACCGTCTCCGAGTCCGTCCCCCGCCCTGAT
GCCATCCCCACGCAACCCGCTCGCACAGTCTCCAGTCTAGTCTCCCTATG
TAGAGAGCTCAATGCCGACGGCCTGGGCGTACGTGCCACAGCCTCCTCCG
TCCATCCGTCCTCCATCTCCCCGTTTCTACAGCTCGAGCACTGCGGCCCC
AAGCACATCCTACCGCATGCCTCACCGGGCATCGACACCCCCCGATGTGG
TCAACAGTGTCTTACCTTCGTTGTTCAGGGACAGTTGCGGTACCGAGATT
CCTGTGCGAACAATGTTCTGCTCAATGCCGGATCCGCATCTTTGCTGACA
GCTGGTTCTGGGCTGGTTGTTTCCCATATGCTTCACGGACCAACCATGGA
GTACATCTCTGTTTGGATAAACATTCCGAGAAACCTTAAGGCGGCCCCTC
CACATTGTTCCTACTCGTTCAGCCCTGCTTGCTCCGTTATCGGATCTGCG
CACGCTTCCGCCCAAATCCGAGTTTTAGCCGCCCCCCGCCGCAACTCTAT
CGACAAGCTCGACTCACCGGCGAAAAACGTGTCACACACTCCCAACTATT
CTCACTCTTCCGTCCAACTTGAAACCCACGCCGGACATGCTGCAGTATAC
GACGTTCGAATGCACCCAAAGTCACAACTTGTTCTCAACCCTGAAACAGA
ACGAGCTTTCGTCTATGTGTACCGTGGCAGCGCGAGAGTTGGCCAGTCAA
CTGTGGTTGAGGAAGGCCAATTTGCTGTCTTATCTGAGCATGCACACTTG
CCTATACTCATCCGTAGCGCCGGGGCTGACGCGGAACACAACTCCCATCG
TCACCGCGATTGGAATGACTTTGAAACTTTCGTCGAGGACGGCTGCTGGT
GCATAGTACTAGCTGGCGATCCCATTATGGAACCTGTCTCCATGCTTTCA
TCGGGCATTGTGGCGTGCACCCCCCAGGAGATAAGAAAGGCATTTCAAGA
ATATAGATGTGGCAGCTTGGGTACATGCAGTCCCTCAGCTGTTCAACGCA
CTCATCTTCACAGTGCCATAGACGACTTCTATGATAGCACCAGTGAACAT
GAGATCAATAATGTCTGTCCCGATCCTCAGAACGATTCAGAGTTAGCTTT
GGGAGAGCTTGATGCTTGA
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protein sequence of Gvermi11931.t1

>Gvermi11931.t1 ID=Gvermi11931.t1|Name=Gvermi11931.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=423bp
MQSPQTYEPQHRPVSIITSLERAAHFFLPRRHKTRRAKTATVSESVPRPD
AIPTQPARTVSSLVSLCRELNADGLGVRATASSVHPSSISPFLQLEHCGP
KHILPHASPGIDTPRCGQQCLTFVVQGQLRYRDSCANNVLLNAGSASLLT
AGSGLVVSHMLHGPTMEYISVWINIPRNLKAAPPHCSYSFSPACSVIGSA
HASAQIRVLAAPRRNSIDKLDSPAKNVSHTPNYSHSSVQLETHAGHAAVY
DVRMHPKSQLVLNPETERAFVYVYRGSARVGQSTVVEEGQFAVLSEHAHL
PILIRSAGADAEHNSHRHRDWNDFETFVEDGCWCIVLAGDPIMEPVSMLS
SGIVACTPQEIRKAFQEYRCGSLGTCSPSAVQRTHLHSAIDDFYDSTSEH
EINNVCPDPQNDSELALGELDA*
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mRNA from alignment at ScGOVlb_3404:2640523..2641791-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11931.t1 ID=Gvermi11931.t1|Name=Gvermi11931.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1269bp|location=Sequence derived from alignment at ScGOVlb_3404:2640523..2641791- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAATCCCCTCAAACCTACGAACCTCAGCACAGACCGGTCTCCATTAT
CACCTCCTTGGAACGTGCCGCCCACTTCTTCCTACCACGTCGCCACAAAA
CCCGTCGTGCCAAGACTGCTACCGTCTCCGAGTCCGTCCCCCGCCCTGAT
GCCATCCCCACGCAACCCGCTCGCACAGTCTCCAGTCTAGTCTCCCTATG
TAGAGAGCTCAATGCCGACGGCCTGGGCGTACGTGCCACAGCCTCCTCCG
TCCATCCGTCCTCCATCTCCCCGTTTCTACAGCTCGAGCACTGCGGCCCC
AAGCACATCCTACCGCATGCCTCACCGGGCATCGACACCCCCCGATGTGG
TCAACAGTGTCTTACCTTCGTTGTTCAGGGACAGTTGCGGTACCGAGATT
CCTGTGCGAACAATGTTCTGCTCAATGCCGGATCCGCATCTTTGCTGACA
GCTGGTTCTGGGCTGGTTGTTTCCCATATGCTTCACGGACCAACCATGGA
GTACATCTCTGTTTGGATAAACATTCCGAGAAACCTTAAGGCGGCCCCTC
CACATTGTTCCTACTCGTTCAGCCCTGCTTGCTCCGTTATCGGATCTGCG
CACGCTTCCGCCCAAATCCGAGTTTTAGCCGCCCCCCGCCGCAACTCTAT
CGACAAGCTCGACTCACCGGCGAAAAACGTGTCACACACTCCCAACTATT
CTCACTCTTCCGTCCAACTTGAAACCCACGCCGGACATGCTGCAGTATAC
GACGTTCGAATGCACCCAAAGTCACAACTTGTTCTCAACCCTGAAACAGA
ACGAGCTTTCGTCTATGTGTACCGTGGCAGCGCGAGAGTTGGCCAGTCAA
CTGTGGTTGAGGAAGGCCAATTTGCTGTCTTATCTGAGCATGCACACTTG
CCTATACTCATCCGTAGCGCCGGGGCTGACGCGGAACACAACTCCCATCG
TCACCGCGATTGGAATGACTTTGAAACTTTCGTCGAGGACGGCTGCTGGT
GCATAGTACTAGCTGGCGATCCCATTATGGAACCTGTCTCCATGCTTTCA
TCGGGCATTGTGGCGTGCACCCCCCAGGAGATAAGAAAGGCATTTCAAGA
ATATAGATGTGGCAGCTTGGGTACATGCAGTCCCTCAGCTGTTCAACGCA
CTCATCTTCACAGTGCCATAGACGACTTCTATGATAGCACCAGTGAACAT
GAGATCAATAATGTCTGTCCCGATCCTCAGAACGATTCAGAGTTAGCTTT
GGGAGAGCTTGATGCTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2640523..2641791-

>Gvermi11931.t1 ID=Gvermi11931.t1|Name=Gvermi11931.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1269bp|location=Sequence derived from alignment at ScGOVlb_3404:2640523..2641791- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAATCCCCTCAAACCTACGAACCTCAGCACAGACCGGTCTCCATTAT
CACCTCCTTGGAACGTGCCGCCCACTTCTTCCTACCACGTCGCCACAAAA
CCCGTCGTGCCAAGACTGCTACCGTCTCCGAGTCCGTCCCCCGCCCTGAT
GCCATCCCCACGCAACCCGCTCGCACAGTCTCCAGTCTAGTCTCCCTATG
TAGAGAGCTCAATGCCGACGGCCTGGGCGTACGTGCCACAGCCTCCTCCG
TCCATCCGTCCTCCATCTCCCCGTTTCTACAGCTCGAGCACTGCGGCCCC
AAGCACATCCTACCGCATGCCTCACCGGGCATCGACACCCCCCGATGTGG
TCAACAGTGTCTTACCTTCGTTGTTCAGGGACAGTTGCGGTACCGAGATT
CCTGTGCGAACAATGTTCTGCTCAATGCCGGATCCGCATCTTTGCTGACA
GCTGGTTCTGGGCTGGTTGTTTCCCATATGCTTCACGGACCAACCATGGA
GTACATCTCTGTTTGGATAAACATTCCGAGAAACCTTAAGGCGGCCCCTC
CACATTGTTCCTACTCGTTCAGCCCTGCTTGCTCCGTTATCGGATCTGCG
CACGCTTCCGCCCAAATCCGAGTTTTAGCCGCCCCCCGCCGCAACTCTAT
CGACAAGCTCGACTCACCGGCGAAAAACGTGTCACACACTCCCAACTATT
CTCACTCTTCCGTCCAACTTGAAACCCACGCCGGACATGCTGCAGTATAC
GACGTTCGAATGCACCCAAAGTCACAACTTGTTCTCAACCCTGAAACAGA
ACGAGCTTTCGTCTATGTGTACCGTGGCAGCGCGAGAGTTGGCCAGTCAA
CTGTGGTTGAGGAAGGCCAATTTGCTGTCTTATCTGAGCATGCACACTTG
CCTATACTCATCCGTAGCGCCGGGGCTGACGCGGAACACAACTCCCATCG
TCACCGCGATTGGAATGACTTTGAAACTTTCGTCGAGGACGGCTGCTGGT
GCATAGTACTAGCTGGCGATCCCATTATGGAACCTGTCTCCATGCTTTCA
TCGGGCATTGTGGCGTGCACCCCCCAGGAGATAAGAAAGGCATTTCAAGA
ATATAGATGTGGCAGCTTGGGTACATGCAGTCCCTCAGCTGTTCAACGCA
CTCATCTTCACAGTGCCATAGACGACTTCTATGATAGCACCAGTGAACAT
GAGATCAATAATGTCTGTCCCGATCCTCAGAACGATTCAGAGTTAGCTTT
GGGAGAGCTTGATGCTTGA
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