Gvermi11930.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi11930.t1
Unique Name	Gvermi11930.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	383

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:2638634..2639782 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704388.1
Preferred name	HPD
PFAMs	Glyoxalase
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00505,RC00738
KEGG ko	ko:K00457
KEGG Reaction	R01372,R02521
KEGG Pathway	ko00130,ko00350,ko00360,ko01100,map00130,map00350,map00360,map01100
KEGG Module	M00044
GOs	GO:0000139,GO:0003674,GO:0003824,GO:0003868,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005829,GO:0006082,GO:0006520,GO:0006558,GO:0006559,GO:0006570,GO:0006572,GO:0006582,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009063,GO:0009072,GO:0009074,GO:0009987,GO:0012505,GO:0016020,GO:0016054,GO:0016491,GO:0016701,GO:0016702,GO:0017144,GO:0018958,GO:0019438,GO:0019439,GO:0019748,GO:0019752,GO:0031090,GO:0031984,GO:0042175,GO:0042438,GO:0042440,GO:0042737,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0046148,GO:0046189,GO:0046395,GO:0051213,GO:0055114,GO:0071704,GO:0098588,GO:0098791,GO:0098827,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901615,GO:1901617,GO:1902221,GO:1902222
Evalue	9.23e-168
EggNOG OGs	COG3185@1\|root,KOG0638@2759\|Eukaryota
EC	1.13.11.27
Description	4-hydroxyphenylpyruvate dioxygenase activity
COG category	E
BRITE	ko00000,ko00001,ko00002,ko01000,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi11930	Gvermi11930	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 2638634..2639782 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11930.t1.start1	Gvermi11930.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 2638634..2638636 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11930.t1.CDS1	Gvermi11930.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 2638634..2639782 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11930.t1.exon1	Gvermi11930.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 2638634..2639782 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11930.t1.stop1	Gvermi11930.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 2639780..2639782 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11930.t1	Gvermi11930.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 2638634..2639782 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:2638634..2639782+
coding sequence from alignment at ScGOVlb_3404:2638634..2639782+

mRNA sequence

>Gvermi11930.t1 ID=Gvermi11930.t1|Name=Gvermi11930.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=383bp
MTGANGAPNRHSTAQFLGFDHVQFWVGNSFQAAAYYISRFGFEPYAYRGL
ETGCRNVMTQVVRQNDIFFAFSSPLEPGNSEFHDHLLRHGDGVKDVSFRV
TDCIQIFDSAVKAGAVVVEPPKVHNTKHGTCVTATIQAFDSDTWHTFVER
TNFRGPFLPGFERYEETDPQVNLTGPPQLQFIDHCVFNQPDGNMEKAVRW
YVDTLGFHRFWSIDDKQIHTKYSSLRSIVVSDPSERIKIPVNEPASGLRK
SQIQEFVDYYGGPGIQHIALNTSDIATSVGVLRQRGVSFIRVPSTYYETK
KQLLRESTTKVREAVDDLQCMGILLDFDNVGYLLQIFTKPLQDRPTFFIE
IIQRNRHSGFGAGNFKSLFEAIEREQALRGNL*

spliced messenger RNA

>Gvermi11930.t1 ID=Gvermi11930.t1|Name=Gvermi11930.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1149bp|location=Sequence derived from alignment at ScGOVlb_3404:2638634..2639782+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGGAGCAAATGGCGCCCCGAACCGACACTCCACAGCTCAGTTTCT
GGGATTCGACCATGTCCAGTTTTGGGTGGGCAACTCCTTTCAGGCTGCGG
CCTACTACATTTCGCGTTTTGGTTTTGAGCCTTATGCGTATCGCGGGCTG
GAGACTGGCTGCCGAAATGTCATGACCCAAGTTGTTCGCCAGAACGACAT
TTTTTTCGCTTTTTCCTCGCCACTAGAACCTGGCAATTCGGAGTTCCACG
ATCATCTCCTGCGTCACGGTGACGGCGTCAAAGACGTTTCATTTCGGGTC
ACCGACTGCATTCAAATATTCGACTCCGCCGTCAAAGCTGGTGCGGTTGT
TGTCGAACCGCCAAAAGTCCATAACACCAAACACGGTACTTGCGTCACCG
CCACTATTCAGGCGTTCGACTCTGACACATGGCACACTTTTGTTGAACGC
ACTAACTTCCGAGGCCCATTTCTACCAGGGTTTGAACGTTATGAGGAGAC
TGATCCTCAAGTAAATCTCACCGGTCCTCCGCAACTCCAATTCATTGACC
ATTGCGTTTTTAACCAACCCGATGGTAACATGGAGAAAGCTGTTCGCTGG
TATGTTGACACGCTTGGATTTCACAGATTCTGGAGTATCGATGATAAGCA
AATACATACCAAGTATAGCTCGTTGCGCAGCATTGTTGTCTCGGATCCCA
GTGAACGCATCAAGATACCTGTTAATGAACCAGCGTCCGGATTGCGGAAG
TCACAGATCCAGGAGTTTGTTGACTACTACGGTGGCCCAGGAATACAGCA
CATTGCTCTAAATACCTCGGATATCGCAACATCCGTTGGCGTGTTACGAC
AGCGAGGTGTGTCGTTTATTCGTGTCCCCTCAACATACTATGAAACAAAG
AAACAGTTATTGAGAGAAAGTACAACAAAAGTGCGGGAGGCCGTAGACGA
CCTTCAGTGTATGGGAATTTTGCTCGACTTTGATAATGTTGGTTACCTAC
TGCAGATTTTCACGAAACCACTACAGGATCGTCCGACGTTCTTCATTGAA
ATTATTCAAAGAAACAGACACAGTGGGTTTGGCGCTGGTAACTTCAAGAG
CTTGTTCGAAGCCATCGAAAGAGAGCAAGCTCTTCGTGGTAACTTGTGA

protein sequence of Gvermi11930.t1

>Gvermi11930.t1 ID=Gvermi11930.t1|Name=Gvermi11930.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=383bp
MTGANGAPNRHSTAQFLGFDHVQFWVGNSFQAAAYYISRFGFEPYAYRGL
ETGCRNVMTQVVRQNDIFFAFSSPLEPGNSEFHDHLLRHGDGVKDVSFRV
TDCIQIFDSAVKAGAVVVEPPKVHNTKHGTCVTATIQAFDSDTWHTFVER
TNFRGPFLPGFERYEETDPQVNLTGPPQLQFIDHCVFNQPDGNMEKAVRW
YVDTLGFHRFWSIDDKQIHTKYSSLRSIVVSDPSERIKIPVNEPASGLRK
SQIQEFVDYYGGPGIQHIALNTSDIATSVGVLRQRGVSFIRVPSTYYETK
KQLLRESTTKVREAVDDLQCMGILLDFDNVGYLLQIFTKPLQDRPTFFIE
IIQRNRHSGFGAGNFKSLFEAIEREQALRGNL*

mRNA from alignment at ScGOVlb_3404:2638634..2639782+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi11930.t1 ID=Gvermi11930.t1|Name=Gvermi11930.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1149bp|location=Sequence derived from alignment at ScGOVlb_3404:2638634..2639782+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTGGAGCAAATGGCGCCCCGAACCGACACTCCACAGCTCAGTTTCT
GGGATTCGACCATGTCCAGTTTTGGGTGGGCAACTCCTTTCAGGCTGCGG
CCTACTACATTTCGCGTTTTGGTTTTGAGCCTTATGCGTATCGCGGGCTG
GAGACTGGCTGCCGAAATGTCATGACCCAAGTTGTTCGCCAGAACGACAT
TTTTTTCGCTTTTTCCTCGCCACTAGAACCTGGCAATTCGGAGTTCCACG
ATCATCTCCTGCGTCACGGTGACGGCGTCAAAGACGTTTCATTTCGGGTC
ACCGACTGCATTCAAATATTCGACTCCGCCGTCAAAGCTGGTGCGGTTGT
TGTCGAACCGCCAAAAGTCCATAACACCAAACACGGTACTTGCGTCACCG
CCACTATTCAGGCGTTCGACTCTGACACATGGCACACTTTTGTTGAACGC
ACTAACTTCCGAGGCCCATTTCTACCAGGGTTTGAACGTTATGAGGAGAC
TGATCCTCAAGTAAATCTCACCGGTCCTCCGCAACTCCAATTCATTGACC
ATTGCGTTTTTAACCAACCCGATGGTAACATGGAGAAAGCTGTTCGCTGG
TATGTTGACACGCTTGGATTTCACAGATTCTGGAGTATCGATGATAAGCA
AATACATACCAAGTATAGCTCGTTGCGCAGCATTGTTGTCTCGGATCCCA
GTGAACGCATCAAGATACCTGTTAATGAACCAGCGTCCGGATTGCGGAAG
TCACAGATCCAGGAGTTTGTTGACTACTACGGTGGCCCAGGAATACAGCA
CATTGCTCTAAATACCTCGGATATCGCAACATCCGTTGGCGTGTTACGAC
AGCGAGGTGTGTCGTTTATTCGTGTCCCCTCAACATACTATGAAACAAAG
AAACAGTTATTGAGAGAAAGTACAACAAAAGTGCGGGAGGCCGTAGACGA
CCTTCAGTGTATGGGAATTTTGCTCGACTTTGATAATGTTGGTTACCTAC
TGCAGATTTTCACGAAACCACTACAGGATCGTCCGACGTTCTTCATTGAA
ATTATTCAAAGAAACAGACACAGTGGGTTTGGCGCTGGTAACTTCAAGAG
CTTGTTCGAAGCCATCGAAAGAGAGCAAGCTCTTCGTGGTAACTTGTGA

Coding sequence (CDS) from alignment at ScGOVlb_3404:2638634..2639782+

>Gvermi11930.t1 ID=Gvermi11930.t1|Name=Gvermi11930.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1149bp|location=Sequence derived from alignment at ScGOVlb_3404:2638634..2639782+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTGGAGCAAATGGCGCCCCGAACCGACACTCCACAGCTCAGTTTCT
GGGATTCGACCATGTCCAGTTTTGGGTGGGCAACTCCTTTCAGGCTGCGG
CCTACTACATTTCGCGTTTTGGTTTTGAGCCTTATGCGTATCGCGGGCTG
GAGACTGGCTGCCGAAATGTCATGACCCAAGTTGTTCGCCAGAACGACAT
TTTTTTCGCTTTTTCCTCGCCACTAGAACCTGGCAATTCGGAGTTCCACG
ATCATCTCCTGCGTCACGGTGACGGCGTCAAAGACGTTTCATTTCGGGTC
ACCGACTGCATTCAAATATTCGACTCCGCCGTCAAAGCTGGTGCGGTTGT
TGTCGAACCGCCAAAAGTCCATAACACCAAACACGGTACTTGCGTCACCG
CCACTATTCAGGCGTTCGACTCTGACACATGGCACACTTTTGTTGAACGC
ACTAACTTCCGAGGCCCATTTCTACCAGGGTTTGAACGTTATGAGGAGAC
TGATCCTCAAGTAAATCTCACCGGTCCTCCGCAACTCCAATTCATTGACC
ATTGCGTTTTTAACCAACCCGATGGTAACATGGAGAAAGCTGTTCGCTGG
TATGTTGACACGCTTGGATTTCACAGATTCTGGAGTATCGATGATAAGCA
AATACATACCAAGTATAGCTCGTTGCGCAGCATTGTTGTCTCGGATCCCA
GTGAACGCATCAAGATACCTGTTAATGAACCAGCGTCCGGATTGCGGAAG
TCACAGATCCAGGAGTTTGTTGACTACTACGGTGGCCCAGGAATACAGCA
CATTGCTCTAAATACCTCGGATATCGCAACATCCGTTGGCGTGTTACGAC
AGCGAGGTGTGTCGTTTATTCGTGTCCCCTCAACATACTATGAAACAAAG
AAACAGTTATTGAGAGAAAGTACAACAAAAGTGCGGGAGGCCGTAGACGA
CCTTCAGTGTATGGGAATTTTGCTCGACTTTGATAATGTTGGTTACCTAC
TGCAGATTTTCACGAAACCACTACAGGATCGTCCGACGTTCTTCATTGAA
ATTATTCAAAGAAACAGACACAGTGGGTTTGGCGCTGGTAACTTCAAGAG
CTTGTTCGAAGCCATCGAAAGAGAGCAAGCTCTTCGTGGTAACTTGTGA