Gvermi11880.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi11880.t1
Unique Name	Gvermi11880.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	445

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:2440990..2442324 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708900.1
PFAMs	Glyco_tran_28_C
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00005,RC00059
KEGG ko	ko:K03715
KEGG Reaction	R02691
KEGG Pathway	ko00561,ko01100,map00561,map01100
Evalue	5.59e-54
EggNOG OGs	2D48I@1\|root,2SU9I@2759\|Eukaryota
EC	2.4.1.46
CAZy	GT28
BRITE	ko00000,ko00001,ko01000,ko01003

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi11880	Gvermi11880	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 2440990..2442324 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11880.t1.stop1	Gvermi11880.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 2440990..2440992 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11880.t1.CDS1	Gvermi11880.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 2440990..2442324 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11880.t1.exon1	Gvermi11880.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 2440990..2442324 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11880.t1.start1	Gvermi11880.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 2442322..2442324 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11880.t1	Gvermi11880.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 2440990..2442324 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:2440990..2442324-
coding sequence from alignment at ScGOVlb_3404:2440990..2442324-

mRNA sequence

>Gvermi11880.t1 ID=Gvermi11880.t1|Name=Gvermi11880.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=445bp
MADASARAGGSSGDWLYNVLLSHNAVAAIELFHTVVQFLWPLATIPLRAN
FRTFWTQFEHLRCVVSFIPMLNAVFAETLPPHVHLVTVLTDFSHTYTHPW
IQHPRQHIVAGTDIAYAQALSRSFQPPHIPSPSMCVTKTSGMVVHPRFYN
RLSSTARKQQLARLNLNHNFPTVLILFGGAPPTDTVIELVRRFLSRTPPH
AVNVIAVCAKNRLLYDRLTHWKSARPNTSLCITGFTEQIPTLMQVSDVLV
GKPGPGVVSEAFVSALPLILITGNSGAKVMKQEKDVLQWVRSKGIAATVH
SPEQAAAISMGQISKMKEAIHRMESNNAVFEVRDLILTKLGLNALPETQQ
KPRQAHRQNEIQTSCHVLIQRSDSETASSLREQQIHESDSAPMITSIAAP
PNQAPSAALEENRVRQGSPVGVGSRRRQDSLSPTTITALSSRAH*

spliced messenger RNA

>Gvermi11880.t1 ID=Gvermi11880.t1|Name=Gvermi11880.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1335bp|location=Sequence derived from alignment at ScGOVlb_3404:2440990..2442324- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGACGCTTCCGCACGCGCCGGCGGCTCCTCCGGCGACTGGCTCTA
CAACGTCCTGTTGTCGCACAACGCTGTCGCCGCCATCGAACTCTTTCACA
CCGTAGTCCAATTCCTGTGGCCGTTGGCAACCATCCCATTGCGTGCCAAC
TTCCGCACCTTCTGGACGCAGTTCGAGCACCTGCGCTGCGTCGTGTCCTT
CATCCCCATGCTCAATGCCGTCTTCGCCGAGACGCTCCCGCCCCATGTGC
ATCTCGTCACCGTCCTCACCGATTTTTCGCACACCTATACCCATCCGTGG
ATCCAGCATCCTCGCCAACATATTGTCGCCGGCACTGACATTGCTTATGC
TCAGGCCCTTTCTCGCTCGTTCCAGCCGCCACATATCCCGTCCCCGTCCA
TGTGCGTCACCAAGACCTCGGGCATGGTCGTTCACCCGCGCTTTTACAAT
CGACTCTCGTCAACAGCGCGAAAGCAGCAACTCGCCCGTCTCAATTTGAA
CCACAACTTTCCCACTGTTCTCATTCTTTTTGGCGGTGCGCCACCCACGG
ATACTGTGATTGAGCTTGTGAGGCGTTTCCTGTCACGAACTCCACCGCAT
GCAGTCAATGTCATTGCTGTCTGCGCCAAGAACCGACTGCTGTATGATCG
CCTCACACATTGGAAAAGCGCTCGTCCCAACACTTCGCTGTGCATCACAG
GTTTCACCGAGCAGATTCCCACGCTCATGCAAGTGTCCGACGTTCTTGTC
GGAAAGCCAGGGCCAGGCGTTGTCTCCGAAGCCTTCGTCAGCGCCCTTCC
TTTGATTCTCATCACCGGCAACAGCGGCGCCAAAGTCATGAAGCAGGAGA
AGGACGTGCTACAGTGGGTGCGCTCTAAGGGCATTGCCGCCACTGTTCAT
TCCCCAGAACAGGCCGCTGCTATCTCCATGGGGCAAATATCCAAAATGAA
GGAAGCCATTCACAGAATGGAATCGAACAATGCCGTATTTGAAGTTCGCG
ACCTCATCCTAACAAAATTGGGTTTGAATGCGTTACCTGAAACCCAACAA
AAACCCCGACAAGCACACCGTCAAAATGAAATACAAACATCCTGTCATGT
GCTAATCCAAAGGTCCGACTCAGAAACAGCATCAAGTCTTCGGGAACAAC
AAATTCACGAAAGCGACAGTGCCCCGATGATAACAAGCATTGCTGCACCT
CCCAACCAGGCCCCGTCCGCGGCTCTGGAAGAAAACCGTGTCAGACAAGG
CTCCCCAGTTGGAGTGGGGAGCCGACGACGTCAGGATAGCCTCTCTCCCA
CAACAATTACCGCTTTAAGTTCACGTGCCCATTAA

protein sequence of Gvermi11880.t1

>Gvermi11880.t1 ID=Gvermi11880.t1|Name=Gvermi11880.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=445bp
MADASARAGGSSGDWLYNVLLSHNAVAAIELFHTVVQFLWPLATIPLRAN
FRTFWTQFEHLRCVVSFIPMLNAVFAETLPPHVHLVTVLTDFSHTYTHPW
IQHPRQHIVAGTDIAYAQALSRSFQPPHIPSPSMCVTKTSGMVVHPRFYN
RLSSTARKQQLARLNLNHNFPTVLILFGGAPPTDTVIELVRRFLSRTPPH
AVNVIAVCAKNRLLYDRLTHWKSARPNTSLCITGFTEQIPTLMQVSDVLV
GKPGPGVVSEAFVSALPLILITGNSGAKVMKQEKDVLQWVRSKGIAATVH
SPEQAAAISMGQISKMKEAIHRMESNNAVFEVRDLILTKLGLNALPETQQ
KPRQAHRQNEIQTSCHVLIQRSDSETASSLREQQIHESDSAPMITSIAAP
PNQAPSAALEENRVRQGSPVGVGSRRRQDSLSPTTITALSSRAH*

mRNA from alignment at ScGOVlb_3404:2440990..2442324-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi11880.t1 ID=Gvermi11880.t1|Name=Gvermi11880.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1335bp|location=Sequence derived from alignment at ScGOVlb_3404:2440990..2442324- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGACGCTTCCGCACGCGCCGGCGGCTCCTCCGGCGACTGGCTCTA
CAACGTCCTGTTGTCGCACAACGCTGTCGCCGCCATCGAACTCTTTCACA
CCGTAGTCCAATTCCTGTGGCCGTTGGCAACCATCCCATTGCGTGCCAAC
TTCCGCACCTTCTGGACGCAGTTCGAGCACCTGCGCTGCGTCGTGTCCTT
CATCCCCATGCTCAATGCCGTCTTCGCCGAGACGCTCCCGCCCCATGTGC
ATCTCGTCACCGTCCTCACCGATTTTTCGCACACCTATACCCATCCGTGG
ATCCAGCATCCTCGCCAACATATTGTCGCCGGCACTGACATTGCTTATGC
TCAGGCCCTTTCTCGCTCGTTCCAGCCGCCACATATCCCGTCCCCGTCCA
TGTGCGTCACCAAGACCTCGGGCATGGTCGTTCACCCGCGCTTTTACAAT
CGACTCTCGTCAACAGCGCGAAAGCAGCAACTCGCCCGTCTCAATTTGAA
CCACAACTTTCCCACTGTTCTCATTCTTTTTGGCGGTGCGCCACCCACGG
ATACTGTGATTGAGCTTGTGAGGCGTTTCCTGTCACGAACTCCACCGCAT
GCAGTCAATGTCATTGCTGTCTGCGCCAAGAACCGACTGCTGTATGATCG
CCTCACACATTGGAAAAGCGCTCGTCCCAACACTTCGCTGTGCATCACAG
GTTTCACCGAGCAGATTCCCACGCTCATGCAAGTGTCCGACGTTCTTGTC
GGAAAGCCAGGGCCAGGCGTTGTCTCCGAAGCCTTCGTCAGCGCCCTTCC
TTTGATTCTCATCACCGGCAACAGCGGCGCCAAAGTCATGAAGCAGGAGA
AGGACGTGCTACAGTGGGTGCGCTCTAAGGGCATTGCCGCCACTGTTCAT
TCCCCAGAACAGGCCGCTGCTATCTCCATGGGGCAAATATCCAAAATGAA
GGAAGCCATTCACAGAATGGAATCGAACAATGCCGTATTTGAAGTTCGCG
ACCTCATCCTAACAAAATTGGGTTTGAATGCGTTACCTGAAACCCAACAA
AAACCCCGACAAGCACACCGTCAAAATGAAATACAAACATCCTGTCATGT
GCTAATCCAAAGGTCCGACTCAGAAACAGCATCAAGTCTTCGGGAACAAC
AAATTCACGAAAGCGACAGTGCCCCGATGATAACAAGCATTGCTGCACCT
CCCAACCAGGCCCCGTCCGCGGCTCTGGAAGAAAACCGTGTCAGACAAGG
CTCCCCAGTTGGAGTGGGGAGCCGACGACGTCAGGATAGCCTCTCTCCCA
CAACAATTACCGCTTTAAGTTCACGTGCCCATTAA

Coding sequence (CDS) from alignment at ScGOVlb_3404:2440990..2442324-

>Gvermi11880.t1 ID=Gvermi11880.t1|Name=Gvermi11880.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1335bp|location=Sequence derived from alignment at ScGOVlb_3404:2440990..2442324- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGACGCTTCCGCACGCGCCGGCGGCTCCTCCGGCGACTGGCTCTA
CAACGTCCTGTTGTCGCACAACGCTGTCGCCGCCATCGAACTCTTTCACA
CCGTAGTCCAATTCCTGTGGCCGTTGGCAACCATCCCATTGCGTGCCAAC
TTCCGCACCTTCTGGACGCAGTTCGAGCACCTGCGCTGCGTCGTGTCCTT
CATCCCCATGCTCAATGCCGTCTTCGCCGAGACGCTCCCGCCCCATGTGC
ATCTCGTCACCGTCCTCACCGATTTTTCGCACACCTATACCCATCCGTGG
ATCCAGCATCCTCGCCAACATATTGTCGCCGGCACTGACATTGCTTATGC
TCAGGCCCTTTCTCGCTCGTTCCAGCCGCCACATATCCCGTCCCCGTCCA
TGTGCGTCACCAAGACCTCGGGCATGGTCGTTCACCCGCGCTTTTACAAT
CGACTCTCGTCAACAGCGCGAAAGCAGCAACTCGCCCGTCTCAATTTGAA
CCACAACTTTCCCACTGTTCTCATTCTTTTTGGCGGTGCGCCACCCACGG
ATACTGTGATTGAGCTTGTGAGGCGTTTCCTGTCACGAACTCCACCGCAT
GCAGTCAATGTCATTGCTGTCTGCGCCAAGAACCGACTGCTGTATGATCG
CCTCACACATTGGAAAAGCGCTCGTCCCAACACTTCGCTGTGCATCACAG
GTTTCACCGAGCAGATTCCCACGCTCATGCAAGTGTCCGACGTTCTTGTC
GGAAAGCCAGGGCCAGGCGTTGTCTCCGAAGCCTTCGTCAGCGCCCTTCC
TTTGATTCTCATCACCGGCAACAGCGGCGCCAAAGTCATGAAGCAGGAGA
AGGACGTGCTACAGTGGGTGCGCTCTAAGGGCATTGCCGCCACTGTTCAT
TCCCCAGAACAGGCCGCTGCTATCTCCATGGGGCAAATATCCAAAATGAA
GGAAGCCATTCACAGAATGGAATCGAACAATGCCGTATTTGAAGTTCGCG
ACCTCATCCTAACAAAATTGGGTTTGAATGCGTTACCTGAAACCCAACAA
AAACCCCGACAAGCACACCGTCAAAATGAAATACAAACATCCTGTCATGT
GCTAATCCAAAGGTCCGACTCAGAAACAGCATCAAGTCTTCGGGAACAAC
AAATTCACGAAAGCGACAGTGCCCCGATGATAACAAGCATTGCTGCACCT
CCCAACCAGGCCCCGTCCGCGGCTCTGGAAGAAAACCGTGTCAGACAAGG
CTCCCCAGTTGGAGTGGGGAGCCGACGACGTCAGGATAGCCTCTCTCCCA
CAACAATTACCGCTTTAAGTTCACGTGCCCATTAA