Gvermi11876.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi11876.t1
Unique Name	Gvermi11876.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	258

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:2421403..2422176 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3055.EDP06085
PFAMs	UDG
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K20813
KEGG Pathway	ko03410,map03410
Evalue	9.45e-18
EggNOG OGs	2CGCP@1\|root,2RYQ9@2759\|Eukaryota,37ZTJ@33090\|Viridiplantae,34KHP@3041\|Chlorophyta
EC	3.2.2.29
BRITE	ko00000,ko00001,ko01000,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi11876	Gvermi11876	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 2421403..2422176 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11876.t1.start1	Gvermi11876.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 2421403..2421405 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11876.t1.CDS1	Gvermi11876.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 2421403..2422176 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11876.t1.exon1	Gvermi11876.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 2421403..2422176 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11876.t1.stop1	Gvermi11876.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 2422174..2422176 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11876.t1	Gvermi11876.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 2421403..2422176 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:2421403..2422176+
coding sequence from alignment at ScGOVlb_3404:2421403..2422176+

mRNA sequence

>Gvermi11876.t1 ID=Gvermi11876.t1|Name=Gvermi11876.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=258bp
MRCISSFVPLAFIFPGQMSTRRIDALRSTRSRVAKMRHRSQECPKPSAST
EVEECEVLKRDFSRYFGDRHPLRIIFVGHNPSAKSWEQVAPYAHSTNKFW
GLLKEVQLAPPDLCKPSEHKELPPCCGIGFIDLFITCGSDASKVKPTAIK
NVEWKKDFFDRLVSGTGGVSPLIICCVSKIVAKKLLGQWNDEFGHVGFGR
DWNLRGAETSEVWVLPSTSGRAGLTFQARLEPFQNLAVRCSALGKWINDD
ATKIEGV*

spliced messenger RNA

>Gvermi11876.t1 ID=Gvermi11876.t1|Name=Gvermi11876.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=774bp|location=Sequence derived from alignment at ScGOVlb_3404:2421403..2422176+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGTGCATTTCATCCTTTGTGCCGCTCGCTTTCATATTTCCCGGCCA
GATGAGCACACGTCGCATTGATGCACTACGCAGCACACGATCTCGCGTAG
CGAAGATGCGACACCGTTCTCAAGAATGTCCAAAGCCATCAGCTTCGACA
GAAGTAGAGGAATGCGAGGTCCTAAAGCGTGATTTTTCTCGATATTTTGG
AGACAGGCATCCCCTCCGCATTATCTTTGTCGGTCACAATCCATCCGCTA
AGAGTTGGGAGCAAGTAGCTCCATATGCGCACAGCACAAACAAGTTTTGG
GGTCTTCTGAAAGAGGTGCAACTGGCGCCTCCTGATCTCTGCAAACCATC
AGAGCACAAAGAATTACCTCCTTGCTGCGGAATCGGGTTTATTGACCTCT
TTATTACCTGTGGAAGCGATGCATCGAAAGTGAAACCAACAGCCATAAAA
AACGTCGAATGGAAGAAAGATTTCTTCGACAGGCTTGTATCTGGAACGGG
GGGCGTGTCTCCTCTCATAATCTGCTGCGTTTCTAAGATTGTCGCGAAGA
AACTTCTTGGTCAGTGGAACGATGAATTTGGGCATGTCGGCTTTGGTCGG
GACTGGAATTTACGAGGCGCCGAAACGAGTGAAGTTTGGGTGCTACCGTC
TACCAGTGGACGAGCTGGACTGACCTTTCAGGCACGTTTGGAGCCATTCC
AGAATTTGGCTGTGCGCTGTTCCGCTCTGGGCAAATGGATTAACGATGAT
GCCACAAAAATTGAAGGCGTGTAA

protein sequence of Gvermi11876.t1

>Gvermi11876.t1 ID=Gvermi11876.t1|Name=Gvermi11876.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=258bp
MRCISSFVPLAFIFPGQMSTRRIDALRSTRSRVAKMRHRSQECPKPSAST
EVEECEVLKRDFSRYFGDRHPLRIIFVGHNPSAKSWEQVAPYAHSTNKFW
GLLKEVQLAPPDLCKPSEHKELPPCCGIGFIDLFITCGSDASKVKPTAIK
NVEWKKDFFDRLVSGTGGVSPLIICCVSKIVAKKLLGQWNDEFGHVGFGR
DWNLRGAETSEVWVLPSTSGRAGLTFQARLEPFQNLAVRCSALGKWINDD
ATKIEGV*

mRNA from alignment at ScGOVlb_3404:2421403..2422176+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi11876.t1 ID=Gvermi11876.t1|Name=Gvermi11876.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=774bp|location=Sequence derived from alignment at ScGOVlb_3404:2421403..2422176+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGGTGCATTTCATCCTTTGTGCCGCTCGCTTTCATATTTCCCGGCCA
GATGAGCACACGTCGCATTGATGCACTACGCAGCACACGATCTCGCGTAG
CGAAGATGCGACACCGTTCTCAAGAATGTCCAAAGCCATCAGCTTCGACA
GAAGTAGAGGAATGCGAGGTCCTAAAGCGTGATTTTTCTCGATATTTTGG
AGACAGGCATCCCCTCCGCATTATCTTTGTCGGTCACAATCCATCCGCTA
AGAGTTGGGAGCAAGTAGCTCCATATGCGCACAGCACAAACAAGTTTTGG
GGTCTTCTGAAAGAGGTGCAACTGGCGCCTCCTGATCTCTGCAAACCATC
AGAGCACAAAGAATTACCTCCTTGCTGCGGAATCGGGTTTATTGACCTCT
TTATTACCTGTGGAAGCGATGCATCGAAAGTGAAACCAACAGCCATAAAA
AACGTCGAATGGAAGAAAGATTTCTTCGACAGGCTTGTATCTGGAACGGG
GGGCGTGTCTCCTCTCATAATCTGCTGCGTTTCTAAGATTGTCGCGAAGA
AACTTCTTGGTCAGTGGAACGATGAATTTGGGCATGTCGGCTTTGGTCGG
GACTGGAATTTACGAGGCGCCGAAACGAGTGAAGTTTGGGTGCTACCGTC
TACCAGTGGACGAGCTGGACTGACCTTTCAGGCACGTTTGGAGCCATTCC
AGAATTTGGCTGTGCGCTGTTCCGCTCTGGGCAAATGGATTAACGATGAT
GCCACAAAAATTGAAGGCGTGTAA

Coding sequence (CDS) from alignment at ScGOVlb_3404:2421403..2422176+

>Gvermi11876.t1 ID=Gvermi11876.t1|Name=Gvermi11876.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=774bp|location=Sequence derived from alignment at ScGOVlb_3404:2421403..2422176+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGGTGCATTTCATCCTTTGTGCCGCTCGCTTTCATATTTCCCGGCCA
GATGAGCACACGTCGCATTGATGCACTACGCAGCACACGATCTCGCGTAG
CGAAGATGCGACACCGTTCTCAAGAATGTCCAAAGCCATCAGCTTCGACA
GAAGTAGAGGAATGCGAGGTCCTAAAGCGTGATTTTTCTCGATATTTTGG
AGACAGGCATCCCCTCCGCATTATCTTTGTCGGTCACAATCCATCCGCTA
AGAGTTGGGAGCAAGTAGCTCCATATGCGCACAGCACAAACAAGTTTTGG
GGTCTTCTGAAAGAGGTGCAACTGGCGCCTCCTGATCTCTGCAAACCATC
AGAGCACAAAGAATTACCTCCTTGCTGCGGAATCGGGTTTATTGACCTCT
TTATTACCTGTGGAAGCGATGCATCGAAAGTGAAACCAACAGCCATAAAA
AACGTCGAATGGAAGAAAGATTTCTTCGACAGGCTTGTATCTGGAACGGG
GGGCGTGTCTCCTCTCATAATCTGCTGCGTTTCTAAGATTGTCGCGAAGA
AACTTCTTGGTCAGTGGAACGATGAATTTGGGCATGTCGGCTTTGGTCGG
GACTGGAATTTACGAGGCGCCGAAACGAGTGAAGTTTGGGTGCTACCGTC
TACCAGTGGACGAGCTGGACTGACCTTTCAGGCACGTTTGGAGCCATTCC
AGAATTTGGCTGTGCGCTGTTCCGCTCTGGGCAAATGGATTAACGATGAT
GCCACAAAAATTGAAGGCGTGTAA