Gvermi11874.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11874.t1
Unique NameGvermi11874.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length619
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2396636..2398700 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44689.DDB0191228
PFAMsABC_tran,ABC_tran_Xtn
Max annot lvl554915|Amoebozoa
KEGG koko:K06185
GOsGO:0006950,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009653,GO:0009987,GO:0009991,GO:0030587,GO:0031152,GO:0031288,GO:0031667,GO:0031668,GO:0031669,GO:0032502,GO:0033554,GO:0042594,GO:0044764,GO:0048856,GO:0050896,GO:0051703,GO:0051704,GO:0051716,GO:0071496,GO:0090702,GO:0098630,GO:0098743,GO:0099120
Evalue8.75e-228
EggNOG OGsCOG0488@1|root,KOG0927@2759|Eukaryota,3XEM0@554915|Amoebozoa
DescriptionABC transporter
COG categoryS
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11874Gvermi11874Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2396636..2398700 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11874.t1Gvermi11874.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2396636..2398700 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11874.t1.start1Gvermi11874.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2396636..2396638 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11874.t1.CDS1Gvermi11874.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2396636..2397430 +
Gvermi11874.t1.CDS2Gvermi11874.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2397565..2397832 +
Gvermi11874.t1.CDS3Gvermi11874.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2397907..2398700 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11874.t1.exon1Gvermi11874.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2396636..2397430 +
Gvermi11874.t1.exon2Gvermi11874.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2397565..2397832 +
Gvermi11874.t1.exon3Gvermi11874.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2397907..2398700 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11874.t1.intron1Gvermi11874.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 2397431..2397564 +
Gvermi11874.t1.intron2Gvermi11874.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 2397833..2397906 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11874.t1.stop1Gvermi11874.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2398698..2398700 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11874.t1 ID=Gvermi11874.t1|Name=Gvermi11874.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=619bp
MPPKNKSKKFLAKQRAREEAEAAKKGPEAVEALRRKYEKGSSALKPKPKK
LDDVASSVTADSVKDELGDAAADTSTTATGVLMSVYGARDIKIGGFSLNF
HNKVLVEDTMIELTVGRRYGLIGQNGCGKSTFLKVLAERQVPIPDYIDIH
LLSEEAHPTEDSALDYVINSARAEVSRLEAKADDVLTEEGPESLVLNDIY
ERMEELDPSTFESRASTILCGLGFTAKTMEKKTKDMSGGWRMRVALAKAL
FIQPTMLLLDEPTNHLDLSACVWLEEYLSRYNKILIVVSHSQDFLDGVCT
DTMVMQQQKLRYWGGNYSTYVRTREEQDTNQLKLYKKQQEEIKHIKQFIA
SCGTYANLVRQAKSRQKQLDRMVEAGLLEPPYVEPRFKFSFFGCGTLAPP
LISFSDVAFSYSGKKEDYLYSDLSFGIDGESRVSLVGPNGAGKSTLLNLM
LQQLSPTEGSVSHKSGLRVGRYHQHSADQLEFNLSPVEYVRSKYPNLHET
LQGYRAEVGRFGITGEAQLAPIAHLSEGMKSRLVFAEIAIRKPHILLLDE
PTNALDVNGIDALAEAINSFEGGVVLVSHDFRLLSQVAREIWVVDHGVKK
WDGDILSYKESLKQGMKF*
back to top

spliced messenger RNA

>Gvermi11874.t1 ID=Gvermi11874.t1|Name=Gvermi11874.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1857bp|location=Sequence derived from alignment at ScGOVlb_3404:2396636..2398700+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCCGAAGAACAAGTCGAAGAAGTTTCTTGCGAAGCAGAGAGCTCG
CGAGGAGGCTGAAGCCGCCAAGAAAGGCCCGGAAGCCGTAGAAGCTTTGC
GCAGGAAATACGAGAAAGGTAGCTCTGCGTTGAAACCCAAGCCAAAGAAG
CTAGACGATGTCGCGTCTTCCGTCACAGCAGACAGTGTCAAGGACGAGTT
GGGAGATGCTGCGGCTGATACAAGTACAACTGCAACTGGCGTCCTGATGT
CCGTGTATGGGGCCCGTGACATTAAGATTGGTGGATTCTCTCTCAACTTT
CACAACAAAGTTCTAGTCGAGGACACCATGATCGAACTTACGGTCGGCAG
ACGCTATGGTCTTATTGGACAAAATGGCTGCGGTAAGAGTACTTTCCTGA
AAGTCCTAGCTGAAAGACAAGTACCTATCCCAGACTACATTGATATTCAT
CTTTTGTCGGAAGAAGCACACCCAACAGAAGACTCTGCCCTGGACTACGT
TATTAATTCGGCACGAGCCGAAGTTAGCAGATTGGAGGCAAAAGCAGACG
ACGTACTCACAGAAGAAGGGCCGGAAAGCCTTGTGCTAAACGACATATAT
GAGAGAATGGAGGAATTAGACCCGTCGACCTTTGAAAGTCGAGCGAGCAC
CATTTTATGCGGTCTGGGTTTCACTGCAAAAACGATGGAGAAAAAGACAA
AAGACATGAGCGGTGGCTGGCGAATGAGAGTCGCTTTGGCAAAGGCTCTA
TTCATACAACCCACTATGCTGTTGCTTGATGAACCAACTAACCATCTTGA
TCTTTCCGCGTGTGTATGGCTAGAGGAATACCTCTCAAGGTACAACAAAA
TTCTTATTGTTGTATCCCACTCTCAGGATTTCTTGGACGGCGTCTGTACA
GATACTATGGTCATGCAACAGCAAAAGCTAAGGTACTGGGGAGGGAATTA
CTCTACTTATGTAAGGACAAGAGAAGAGCAAGATACTAATCAATTGAAGT
TATACAAGAAGCAACAAGAAGAAATCAAACACATTAAGCAATTCATTGCA
TCCTGCGGTACTTATGCGAACCTTGTACGTCAAGCGAAATCGCGGCAGAA
ACAGCTTGATAGAATGGTGGAGGCTGGACTGCTTGAACCGCCTTATGTTG
AACCGCGCTTCAAATTTTCTTTTTTTGGATGTGGAACACTCGCTCCTCCC
CTAATCAGTTTTTCTGATGTTGCATTTTCGTACTCTGGAAAGAAAGAAGA
TTACCTCTATTCTGATTTGAGCTTTGGCATAGATGGTGAATCTAGAGTTT
CCCTAGTAGGCCCGAACGGTGCCGGGAAGAGCACGCTTTTGAACCTCATG
TTGCAGCAATTGAGCCCAACTGAAGGGAGTGTTTCTCATAAGTCTGGACT
GAGGGTAGGTCGTTATCATCAGCATTCCGCAGACCAATTAGAATTCAACC
TTTCACCGGTTGAGTACGTTCGATCAAAGTACCCCAATCTACATGAGACT
CTTCAGGGTTATCGAGCCGAGGTTGGTCGTTTTGGTATCACAGGAGAAGC
ACAACTCGCTCCGATTGCTCACCTCAGTGAAGGTATGAAGTCTCGCCTAG
TATTTGCGGAGATTGCTATCCGGAAGCCACATATTTTATTGCTAGACGAG
CCTACAAATGCTCTTGACGTTAACGGAATTGATGCGCTGGCTGAAGCAAT
CAACAGTTTTGAAGGCGGAGTCGTGCTTGTTTCCCATGACTTTCGATTAC
TAAGTCAGGTGGCACGAGAGATTTGGGTTGTGGATCATGGTGTCAAAAAA
TGGGACGGGGATATTTTGTCGTACAAGGAAAGTCTGAAGCAGGGTATGAA
ATTCTAA
back to top

protein sequence of Gvermi11874.t1

>Gvermi11874.t1 ID=Gvermi11874.t1|Name=Gvermi11874.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=619bp
MPPKNKSKKFLAKQRAREEAEAAKKGPEAVEALRRKYEKGSSALKPKPKK
LDDVASSVTADSVKDELGDAAADTSTTATGVLMSVYGARDIKIGGFSLNF
HNKVLVEDTMIELTVGRRYGLIGQNGCGKSTFLKVLAERQVPIPDYIDIH
LLSEEAHPTEDSALDYVINSARAEVSRLEAKADDVLTEEGPESLVLNDIY
ERMEELDPSTFESRASTILCGLGFTAKTMEKKTKDMSGGWRMRVALAKAL
FIQPTMLLLDEPTNHLDLSACVWLEEYLSRYNKILIVVSHSQDFLDGVCT
DTMVMQQQKLRYWGGNYSTYVRTREEQDTNQLKLYKKQQEEIKHIKQFIA
SCGTYANLVRQAKSRQKQLDRMVEAGLLEPPYVEPRFKFSFFGCGTLAPP
LISFSDVAFSYSGKKEDYLYSDLSFGIDGESRVSLVGPNGAGKSTLLNLM
LQQLSPTEGSVSHKSGLRVGRYHQHSADQLEFNLSPVEYVRSKYPNLHET
LQGYRAEVGRFGITGEAQLAPIAHLSEGMKSRLVFAEIAIRKPHILLLDE
PTNALDVNGIDALAEAINSFEGGVVLVSHDFRLLSQVAREIWVVDHGVKK
WDGDILSYKESLKQGMKF*
back to top

mRNA from alignment at ScGOVlb_3404:2396636..2398700+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11874.t1 ID=Gvermi11874.t1|Name=Gvermi11874.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2065bp|location=Sequence derived from alignment at ScGOVlb_3404:2396636..2398700+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTCCGAAGAACAAGTCGAAGAAGTTTCTTGCGAAGCAGAGAGCTCG
CGAGGAGGCTGAAGCCGCCAAGAAAGGCCCGGAAGCCGTAGAAGCTTTGC
GCAGGAAATACGAGAAAGGTAGCTCTGCGTTGAAACCCAAGCCAAAGAAG
CTAGACGATGTCGCGTCTTCCGTCACAGCAGACAGTGTCAAGGACGAGTT
GGGAGATGCTGCGGCTGATACAAGTACAACTGCAACTGGCGTCCTGATGT
CCGTGTATGGGGCCCGTGACATTAAGATTGGTGGATTCTCTCTCAACTTT
CACAACAAAGTTCTAGTCGAGGACACCATGATCGAACTTACGGTCGGCAG
ACGCTATGGTCTTATTGGACAAAATGGCTGCGGTAAGAGTACTTTCCTGA
AAGTCCTAGCTGAAAGACAAGTACCTATCCCAGACTACATTGATATTCAT
CTTTTGTCGGAAGAAGCACACCCAACAGAAGACTCTGCCCTGGACTACGT
TATTAATTCGGCACGAGCCGAAGTTAGCAGATTGGAGGCAAAAGCAGACG
ACGTACTCACAGAAGAAGGGCCGGAAAGCCTTGTGCTAAACGACATATAT
GAGAGAATGGAGGAATTAGACCCGTCGACCTTTGAAAGTCGAGCGAGCAC
CATTTTATGCGGTCTGGGTTTCACTGCAAAAACGATGGAGAAAAAGACAA
AAGACATGAGCGGTGGCTGGCGAATGAGAGTCGCTTTGGCAAAGGCTCTA
TTCATACAACCCACTATGCTGTTGCTTGATGAACCAACTAACCATGTATG
TTAAGCACTATTTCAAAGATAATCGTTTCTGCCTTCAATTAGCGGAAGGT
TTTCTGTAACGTTATATGCTAACCCTGTGATTCTTCTGTTATATTCCTTA
CGCATTGCTCTTTCTTGTTTTACTCTCAGCTTGATCTTTCCGCGTGTGTA
TGGCTAGAGGAATACCTCTCAAGGTACAACAAAATTCTTATTGTTGTATC
CCACTCTCAGGATTTCTTGGACGGCGTCTGTACAGATACTATGGTCATGC
AACAGCAAAAGCTAAGGTACTGGGGAGGGAATTACTCTACTTATGTAAGG
ACAAGAGAAGAGCAAGATACTAATCAATTGAAGTTATACAAGAAGCAACA
AGAAGAAATCAAACACATTAAGCAATTCATTGCATCCTGCGGTACTTGTA
CGTTTCATTTTCAATTGGTCATATCAAAGAGCATAATTCTTACCGATATC
CTTTTTCTCCACACGTTACAGATGCGAACCTTGTACGTCAAGCGAAATCG
CGGCAGAAACAGCTTGATAGAATGGTGGAGGCTGGACTGCTTGAACCGCC
TTATGTTGAACCGCGCTTCAAATTTTCTTTTTTTGGATGTGGAACACTCG
CTCCTCCCCTAATCAGTTTTTCTGATGTTGCATTTTCGTACTCTGGAAAG
AAAGAAGATTACCTCTATTCTGATTTGAGCTTTGGCATAGATGGTGAATC
TAGAGTTTCCCTAGTAGGCCCGAACGGTGCCGGGAAGAGCACGCTTTTGA
ACCTCATGTTGCAGCAATTGAGCCCAACTGAAGGGAGTGTTTCTCATAAG
TCTGGACTGAGGGTAGGTCGTTATCATCAGCATTCCGCAGACCAATTAGA
ATTCAACCTTTCACCGGTTGAGTACGTTCGATCAAAGTACCCCAATCTAC
ATGAGACTCTTCAGGGTTATCGAGCCGAGGTTGGTCGTTTTGGTATCACA
GGAGAAGCACAACTCGCTCCGATTGCTCACCTCAGTGAAGGTATGAAGTC
TCGCCTAGTATTTGCGGAGATTGCTATCCGGAAGCCACATATTTTATTGC
TAGACGAGCCTACAAATGCTCTTGACGTTAACGGAATTGATGCGCTGGCT
GAAGCAATCAACAGTTTTGAAGGCGGAGTCGTGCTTGTTTCCCATGACTT
TCGATTACTAAGTCAGGTGGCACGAGAGATTTGGGTTGTGGATCATGGTG
TCAAAAAATGGGACGGGGATATTTTGTCGTACAAGGAAAGTCTGAAGCAG
GGTATGAAATTCTAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:2396636..2398700+

>Gvermi11874.t1 ID=Gvermi11874.t1|Name=Gvermi11874.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1857bp|location=Sequence derived from alignment at ScGOVlb_3404:2396636..2398700+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTCCGAAGAACAAGTCGAAGAAGTTTCTTGCGAAGCAGAGAGCTCG
CGAGGAGGCTGAAGCCGCCAAGAAAGGCCCGGAAGCCGTAGAAGCTTTGC
GCAGGAAATACGAGAAAGGTAGCTCTGCGTTGAAACCCAAGCCAAAGAAG
CTAGACGATGTCGCGTCTTCCGTCACAGCAGACAGTGTCAAGGACGAGTT
GGGAGATGCTGCGGCTGATACAAGTACAACTGCAACTGGCGTCCTGATGT
CCGTGTATGGGGCCCGTGACATTAAGATTGGTGGATTCTCTCTCAACTTT
CACAACAAAGTTCTAGTCGAGGACACCATGATCGAACTTACGGTCGGCAG
ACGCTATGGTCTTATTGGACAAAATGGCTGCGGTAAGAGTACTTTCCTGA
AAGTCCTAGCTGAAAGACAAGTACCTATCCCAGACTACATTGATATTCAT
CTTTTGTCGGAAGAAGCACACCCAACAGAAGACTCTGCCCTGGACTACGT
TATTAATTCGGCACGAGCCGAAGTTAGCAGATTGGAGGCAAAAGCAGACG
ACGTACTCACAGAAGAAGGGCCGGAAAGCCTTGTGCTAAACGACATATAT
GAGAGAATGGAGGAATTAGACCCGTCGACCTTTGAAAGTCGAGCGAGCAC
CATTTTATGCGGTCTGGGTTTCACTGCAAAAACGATGGAGAAAAAGACAA
AAGACATGAGCGGTGGCTGGCGAATGAGAGTCGCTTTGGCAAAGGCTCTA
TTCATACAACCCACTATGCTGTTGCTTGATGAACCAACTAACCATCTTGA
TCTTTCCGCGTGTGTATGGCTAGAGGAATACCTCTCAAGGTACAACAAAA
TTCTTATTGTTGTATCCCACTCTCAGGATTTCTTGGACGGCGTCTGTACA
GATACTATGGTCATGCAACAGCAAAAGCTAAGGTACTGGGGAGGGAATTA
CTCTACTTATGTAAGGACAAGAGAAGAGCAAGATACTAATCAATTGAAGT
TATACAAGAAGCAACAAGAAGAAATCAAACACATTAAGCAATTCATTGCA
TCCTGCGGTACTTATGCGAACCTTGTACGTCAAGCGAAATCGCGGCAGAA
ACAGCTTGATAGAATGGTGGAGGCTGGACTGCTTGAACCGCCTTATGTTG
AACCGCGCTTCAAATTTTCTTTTTTTGGATGTGGAACACTCGCTCCTCCC
CTAATCAGTTTTTCTGATGTTGCATTTTCGTACTCTGGAAAGAAAGAAGA
TTACCTCTATTCTGATTTGAGCTTTGGCATAGATGGTGAATCTAGAGTTT
CCCTAGTAGGCCCGAACGGTGCCGGGAAGAGCACGCTTTTGAACCTCATG
TTGCAGCAATTGAGCCCAACTGAAGGGAGTGTTTCTCATAAGTCTGGACT
GAGGGTAGGTCGTTATCATCAGCATTCCGCAGACCAATTAGAATTCAACC
TTTCACCGGTTGAGTACGTTCGATCAAAGTACCCCAATCTACATGAGACT
CTTCAGGGTTATCGAGCCGAGGTTGGTCGTTTTGGTATCACAGGAGAAGC
ACAACTCGCTCCGATTGCTCACCTCAGTGAAGGTATGAAGTCTCGCCTAG
TATTTGCGGAGATTGCTATCCGGAAGCCACATATTTTATTGCTAGACGAG
CCTACAAATGCTCTTGACGTTAACGGAATTGATGCGCTGGCTGAAGCAAT
CAACAGTTTTGAAGGCGGAGTCGTGCTTGTTTCCCATGACTTTCGATTAC
TAAGTCAGGTGGCACGAGAGATTTGGGTTGTGGATCATGGTGTCAAAAAA
TGGGACGGGGATATTTTGTCGTACAAGGAAAGTCTGAAGCAGGGTATGAA
ATTCTAA
back to top