Gvermi11870.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11870.t1
Unique NameGvermi11870.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length442
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2336753..2338078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1463861.JNXE01000007_gene1063
PFAMsAminotran_5
Max annot lvl201174|Actinobacteria
Evalue3.77e-105
EggNOG OGsCOG0520@1|root,COG0520@2|Bacteria,2IAKT@201174|Actinobacteria
DescriptionAminotransferase class-V
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11870Gvermi11870Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2336753..2338078 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11870.t1.stop1Gvermi11870.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2336753..2336755 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11870.t1.CDS1Gvermi11870.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2336753..2338078 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11870.t1.exon1Gvermi11870.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2336753..2338078 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11870.t1.start1Gvermi11870.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2338076..2338078 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11870.t1Gvermi11870.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2336753..2338078 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11870.t1 ID=Gvermi11870.t1|Name=Gvermi11870.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=442bp
MNESFMRLRRKHFVQLDRSNIVYLDHTGACPVPRELPLKHAELLSTHVYA
NPHSASLPSADATAALERARSAVLRFFHAQDHEVIFTANASAAIHLVAQT
FPFSAASSLYMSADNHNSVLALRESVRHVGGKTVVLPLDTRLNLAEPHSY
IKQREDGASLLAYPAQSNFSGVRHDLSLVEYAKSRNVRVLLDAAAYVPTS
ALDLSVVNADFVPLSFYKMFGYPTGIGALIVRKDAMQILRKQWFAGGTVK
FVSVSADLHVLQDGPDAFQDGTVDFLAFPAIVNGLRFLSKIGMSNISRQV
ASLTHQLLHHLHRMRYANGRMMTVVYGPGLHDHSNRGGTIALDVLDDRGN
RMDSHFVEREAGRRGLAIRAGCFCNPGCAERVFDIDALSVVECVRSGQSA
YDCTGGLGCLRVSVGVASVKKDVKAFLSFVSEFCHKFGRKS*
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spliced messenger RNA

>Gvermi11870.t1 ID=Gvermi11870.t1|Name=Gvermi11870.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1326bp|location=Sequence derived from alignment at ScGOVlb_3404:2336753..2338078- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGAGTCTTTCATGCGTTTGCGCCGGAAGCACTTTGTGCAACTGGA
CCGCTCCAACATCGTCTATTTGGATCACACTGGCGCTTGTCCAGTTCCGC
GCGAGCTGCCGTTGAAGCATGCTGAGCTTCTTTCCACGCATGTGTACGCG
AACCCGCACTCGGCTTCCCTGCCTTCGGCCGATGCCACAGCTGCTCTGGA
ACGTGCGCGCAGCGCCGTACTGCGCTTCTTTCACGCACAGGACCATGAGG
TGATTTTTACTGCCAACGCATCGGCCGCCATTCACCTCGTGGCACAGACG
TTTCCGTTTTCAGCTGCGTCTTCGCTTTACATGTCCGCGGACAATCATAA
CTCGGTGTTGGCCCTGAGAGAGTCTGTTCGTCATGTCGGCGGGAAGACGG
TGGTTCTGCCGCTAGATACGCGCCTGAATCTTGCAGAACCGCACTCATAC
ATCAAGCAGAGAGAGGATGGCGCCAGTTTACTGGCTTATCCGGCGCAGTC
CAACTTTTCCGGCGTTCGCCACGACCTTAGTCTTGTTGAATATGCCAAGA
GCCGTAACGTTCGCGTGTTACTGGATGCGGCCGCGTACGTGCCTACTTCG
GCGCTGGATCTTTCTGTGGTGAATGCAGACTTTGTTCCCTTGTCATTTTA
CAAGATGTTTGGGTATCCCACTGGGATTGGTGCGTTGATTGTTCGCAAGG
ATGCCATGCAAATCCTTCGCAAGCAGTGGTTTGCTGGTGGAACGGTGAAA
TTTGTATCGGTATCGGCTGACTTGCACGTGTTGCAAGACGGTCCCGACGC
ATTTCAAGATGGCACGGTCGACTTCTTGGCGTTCCCTGCGATTGTGAATG
GATTGCGATTTCTGTCAAAGATTGGTATGAGCAACATATCGCGGCAGGTG
GCGTCATTGACGCACCAGCTGTTGCATCATCTGCACCGTATGCGATACGC
AAATGGCCGCATGATGACGGTGGTGTACGGACCTGGGTTGCACGACCATA
GCAACCGCGGCGGAACGATCGCGCTGGATGTGCTGGATGATCGCGGAAAC
CGCATGGATAGTCACTTTGTAGAGAGGGAAGCTGGACGAAGGGGGCTGGC
CATCCGCGCTGGCTGTTTTTGTAACCCAGGGTGTGCGGAACGGGTATTCG
ACATCGACGCTTTGTCTGTGGTGGAGTGCGTTCGAAGCGGGCAAAGCGCG
TACGATTGCACGGGTGGTCTGGGGTGTCTGCGCGTGTCGGTGGGAGTGGC
CAGTGTGAAAAAGGACGTCAAGGCGTTTTTGTCGTTTGTAAGCGAGTTTT
GTCACAAGTTTGGGCGGAAGAGCTGA
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protein sequence of Gvermi11870.t1

>Gvermi11870.t1 ID=Gvermi11870.t1|Name=Gvermi11870.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=442bp
MNESFMRLRRKHFVQLDRSNIVYLDHTGACPVPRELPLKHAELLSTHVYA
NPHSASLPSADATAALERARSAVLRFFHAQDHEVIFTANASAAIHLVAQT
FPFSAASSLYMSADNHNSVLALRESVRHVGGKTVVLPLDTRLNLAEPHSY
IKQREDGASLLAYPAQSNFSGVRHDLSLVEYAKSRNVRVLLDAAAYVPTS
ALDLSVVNADFVPLSFYKMFGYPTGIGALIVRKDAMQILRKQWFAGGTVK
FVSVSADLHVLQDGPDAFQDGTVDFLAFPAIVNGLRFLSKIGMSNISRQV
ASLTHQLLHHLHRMRYANGRMMTVVYGPGLHDHSNRGGTIALDVLDDRGN
RMDSHFVEREAGRRGLAIRAGCFCNPGCAERVFDIDALSVVECVRSGQSA
YDCTGGLGCLRVSVGVASVKKDVKAFLSFVSEFCHKFGRKS*
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mRNA from alignment at ScGOVlb_3404:2336753..2338078-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11870.t1 ID=Gvermi11870.t1|Name=Gvermi11870.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1326bp|location=Sequence derived from alignment at ScGOVlb_3404:2336753..2338078- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACGAGTCTTTCATGCGTTTGCGCCGGAAGCACTTTGTGCAACTGGA
CCGCTCCAACATCGTCTATTTGGATCACACTGGCGCTTGTCCAGTTCCGC
GCGAGCTGCCGTTGAAGCATGCTGAGCTTCTTTCCACGCATGTGTACGCG
AACCCGCACTCGGCTTCCCTGCCTTCGGCCGATGCCACAGCTGCTCTGGA
ACGTGCGCGCAGCGCCGTACTGCGCTTCTTTCACGCACAGGACCATGAGG
TGATTTTTACTGCCAACGCATCGGCCGCCATTCACCTCGTGGCACAGACG
TTTCCGTTTTCAGCTGCGTCTTCGCTTTACATGTCCGCGGACAATCATAA
CTCGGTGTTGGCCCTGAGAGAGTCTGTTCGTCATGTCGGCGGGAAGACGG
TGGTTCTGCCGCTAGATACGCGCCTGAATCTTGCAGAACCGCACTCATAC
ATCAAGCAGAGAGAGGATGGCGCCAGTTTACTGGCTTATCCGGCGCAGTC
CAACTTTTCCGGCGTTCGCCACGACCTTAGTCTTGTTGAATATGCCAAGA
GCCGTAACGTTCGCGTGTTACTGGATGCGGCCGCGTACGTGCCTACTTCG
GCGCTGGATCTTTCTGTGGTGAATGCAGACTTTGTTCCCTTGTCATTTTA
CAAGATGTTTGGGTATCCCACTGGGATTGGTGCGTTGATTGTTCGCAAGG
ATGCCATGCAAATCCTTCGCAAGCAGTGGTTTGCTGGTGGAACGGTGAAA
TTTGTATCGGTATCGGCTGACTTGCACGTGTTGCAAGACGGTCCCGACGC
ATTTCAAGATGGCACGGTCGACTTCTTGGCGTTCCCTGCGATTGTGAATG
GATTGCGATTTCTGTCAAAGATTGGTATGAGCAACATATCGCGGCAGGTG
GCGTCATTGACGCACCAGCTGTTGCATCATCTGCACCGTATGCGATACGC
AAATGGCCGCATGATGACGGTGGTGTACGGACCTGGGTTGCACGACCATA
GCAACCGCGGCGGAACGATCGCGCTGGATGTGCTGGATGATCGCGGAAAC
CGCATGGATAGTCACTTTGTAGAGAGGGAAGCTGGACGAAGGGGGCTGGC
CATCCGCGCTGGCTGTTTTTGTAACCCAGGGTGTGCGGAACGGGTATTCG
ACATCGACGCTTTGTCTGTGGTGGAGTGCGTTCGAAGCGGGCAAAGCGCG
TACGATTGCACGGGTGGTCTGGGGTGTCTGCGCGTGTCGGTGGGAGTGGC
CAGTGTGAAAAAGGACGTCAAGGCGTTTTTGTCGTTTGTAAGCGAGTTTT
GTCACAAGTTTGGGCGGAAGAGCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2336753..2338078-

>Gvermi11870.t1 ID=Gvermi11870.t1|Name=Gvermi11870.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1326bp|location=Sequence derived from alignment at ScGOVlb_3404:2336753..2338078- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACGAGTCTTTCATGCGTTTGCGCCGGAAGCACTTTGTGCAACTGGA
CCGCTCCAACATCGTCTATTTGGATCACACTGGCGCTTGTCCAGTTCCGC
GCGAGCTGCCGTTGAAGCATGCTGAGCTTCTTTCCACGCATGTGTACGCG
AACCCGCACTCGGCTTCCCTGCCTTCGGCCGATGCCACAGCTGCTCTGGA
ACGTGCGCGCAGCGCCGTACTGCGCTTCTTTCACGCACAGGACCATGAGG
TGATTTTTACTGCCAACGCATCGGCCGCCATTCACCTCGTGGCACAGACG
TTTCCGTTTTCAGCTGCGTCTTCGCTTTACATGTCCGCGGACAATCATAA
CTCGGTGTTGGCCCTGAGAGAGTCTGTTCGTCATGTCGGCGGGAAGACGG
TGGTTCTGCCGCTAGATACGCGCCTGAATCTTGCAGAACCGCACTCATAC
ATCAAGCAGAGAGAGGATGGCGCCAGTTTACTGGCTTATCCGGCGCAGTC
CAACTTTTCCGGCGTTCGCCACGACCTTAGTCTTGTTGAATATGCCAAGA
GCCGTAACGTTCGCGTGTTACTGGATGCGGCCGCGTACGTGCCTACTTCG
GCGCTGGATCTTTCTGTGGTGAATGCAGACTTTGTTCCCTTGTCATTTTA
CAAGATGTTTGGGTATCCCACTGGGATTGGTGCGTTGATTGTTCGCAAGG
ATGCCATGCAAATCCTTCGCAAGCAGTGGTTTGCTGGTGGAACGGTGAAA
TTTGTATCGGTATCGGCTGACTTGCACGTGTTGCAAGACGGTCCCGACGC
ATTTCAAGATGGCACGGTCGACTTCTTGGCGTTCCCTGCGATTGTGAATG
GATTGCGATTTCTGTCAAAGATTGGTATGAGCAACATATCGCGGCAGGTG
GCGTCATTGACGCACCAGCTGTTGCATCATCTGCACCGTATGCGATACGC
AAATGGCCGCATGATGACGGTGGTGTACGGACCTGGGTTGCACGACCATA
GCAACCGCGGCGGAACGATCGCGCTGGATGTGCTGGATGATCGCGGAAAC
CGCATGGATAGTCACTTTGTAGAGAGGGAAGCTGGACGAAGGGGGCTGGC
CATCCGCGCTGGCTGTTTTTGTAACCCAGGGTGTGCGGAACGGGTATTCG
ACATCGACGCTTTGTCTGTGGTGGAGTGCGTTCGAAGCGGGCAAAGCGCG
TACGATTGCACGGGTGGTCTGGGGTGTCTGCGCGTGTCGGTGGGAGTGGC
CAGTGTGAAAAAGGACGTCAAGGCGTTTTTGTCGTTTGTAAGCGAGTTTT
GTCACAAGTTTGGGCGGAAGAGCTGA
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