|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 45157.CMH144CT |
| Preferred name | SBE1 |
| PFAMs | Alpha-amylase,Alpha-amylase_C,CBM_48 |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K00700 |
| KEGG Reaction | R02110 |
| KEGG Pathway | ko00500,ko01100,ko01110,map00500,map01100,map01110 |
| KEGG Module | M00565 |
| GOs | GO:0000271,GO:0001678,GO:0003674,GO:0003824,GO:0003844,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0005982,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009314,GO:0009416,GO:0009501,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009743,GO:0009744,GO:0009746,GO:0009749,GO:0009750,GO:0009987,GO:0010021,GO:0010033,GO:0015980,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0019725,GO:0033500,GO:0033692,GO:0034284,GO:0034285,GO:0034637,GO:0034645,GO:0042221,GO:0042592,GO:0042593,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048878,GO:0050896,GO:0051716,GO:0055082,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0071214,GO:0071310,GO:0071322,GO:0071324,GO:0071326,GO:0071329,GO:0071331,GO:0071332,GO:0071333,GO:0071478,GO:0071482,GO:0071704,GO:0104004,GO:1901135,GO:1901137,GO:1901576,GO:1901700,GO:1901701,GO:2000896 |
| Evalue | 0.0 |
| EggNOG OGs | COG0296@1|root,KOG0470@2759|Eukaryota |
| EC | 2.4.1.18 |
| Description | 1,4-alpha-glucan branching enzyme activity |
| COG category | G |
| CAZy | CBM48,GH13 |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko04147 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gvermi11859.t1 ID=Gvermi11859.t1|Name=Gvermi11859.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=767bp MGSEDPHYVAWKDKKDGTACIRDDRYLEPFAEALRYRYAKYSEILSAIES SEKSLEQFSRGYETMGIHRVKGGVRYKEWAPSAREMYFFGEFNNWDRHAI RMERDEFGIWSCFIPETEPGVSPIPHGSKVKAAVVPHNGPWLDRNPAWAT FCVQDPNTYLYDTVFWDPPEKFKWNGPNHVKRPDSLRIYECHVGMGSNDL KVGSYREFADNVLPRIKETGYTALQIMAIMEHAYYASFGYHVTNFFAISS RCGQPEDLKYLIDKAHKLGLYVLMDVVHSHASSNSMDGINNFDGTDHHYF HEGERGRHSLWDSRLFNYGHWEVIRFLLSNLRWYMEEYHFDGFRFDGVTS MLYLHSGIGVQFTGNYSEYFGFQVDVDACVYMMLANKLVHELYPDVAITI AEDVSGMPTLCVPVERGGIGFDFRLAMAIPDMWIEVLEKQKDENWNMGNI VFNLTNRRWNEKTIGYCESHDQALVGDKTMAFWLMDAAMYTDMSCDGYPT PTIERGVALHKMIRLLTMCLSGEGYLTFMGNEFGHPEWIDFPREGNGNSY QHARRRWDLCDNEALRYKHLYQFEKMMHKLDDEHPFCRFQAHQYVVLSHE GDKVIAIEKGDRLLFVFNFHHSQSYSDYRIGTYWGGRYRLVLDSDGMNTG GHGRVHWDVVHTTRTEPWHNRPYYLQVYTPARTCQVYHCYETWDEERQRG ERESQAAKNAETATGDVKQETESDEKASTKVKEISSVAVKMEEKLQLNGS KKASSDEQEEVAVSKA* back to topspliced messenger RNA >Gvermi11859.t1 ID=Gvermi11859.t1|Name=Gvermi11859.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2301bp|location=Sequence derived from alignment at ScGOVlb_3404:2288420..2290720- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGGATCGGAGGACCCCCATTACGTCGCTTGGAAGGACAAGAAGGATGG AACTGCTTGCATTCGTGACGACCGTTACCTCGAGCCTTTCGCCGAAGCTT TACGCTATCGCTACGCGAAGTACTCCGAGATTTTGTCCGCAATAGAGTCC AGTGAGAAGTCTTTGGAACAATTCTCAAGAGGCTATGAGACCATGGGTAT CCATCGCGTGAAGGGCGGAGTGCGGTACAAAGAGTGGGCGCCAAGTGCTC GTGAAATGTATTTCTTTGGAGAATTTAACAACTGGGATCGCCATGCTATC CGTATGGAGCGCGATGAGTTTGGAATCTGGTCTTGCTTTATTCCCGAGAC TGAGCCGGGCGTTTCTCCGATCCCCCATGGATCCAAGGTGAAGGCTGCTG TTGTACCACATAATGGGCCATGGTTAGATCGCAACCCCGCATGGGCCACT TTCTGTGTACAAGACCCTAATACCTATCTATACGACACAGTGTTCTGGGA TCCACCGGAAAAGTTTAAGTGGAACGGTCCGAATCATGTTAAACGACCGG ACTCGCTTCGTATTTACGAGTGCCATGTTGGTATGGGTTCAAACGATCTC AAAGTTGGCTCGTACCGCGAGTTTGCTGATAATGTGTTGCCGCGCATAAA AGAAACAGGGTACACCGCCTTGCAGATTATGGCCATCATGGAACATGCGT ATTATGCGAGTTTTGGCTATCACGTCACCAATTTCTTCGCGATTAGTTCT AGATGTGGTCAACCAGAAGACCTCAAGTATCTCATTGATAAGGCGCATAA ACTTGGATTATACGTTCTCATGGATGTGGTTCACTCTCATGCCTCGAGCA ACTCTATGGACGGTATTAATAACTTTGATGGCACTGACCACCACTACTTT CATGAAGGTGAACGGGGTAGACATTCTTTGTGGGATTCCAGGCTGTTCAA CTATGGACATTGGGAAGTGATTCGCTTTCTTTTATCTAACCTCAGATGGT ACATGGAGGAATATCACTTTGACGGTTTTCGTTTTGATGGAGTAACATCT ATGCTCTACTTGCATTCCGGAATTGGCGTTCAATTTACTGGAAACTACAG CGAGTACTTTGGTTTCCAAGTTGATGTCGATGCATGTGTTTACATGATGC TTGCTAATAAGCTTGTACATGAACTGTACCCGGATGTAGCGATTACCATT GCGGAAGATGTCAGCGGCATGCCGACGTTGTGTGTGCCTGTTGAACGGGG AGGAATTGGCTTTGATTTCCGACTCGCTATGGCTATTCCCGATATGTGGA TTGAGGTTTTGGAAAAGCAAAAGGATGAAAACTGGAACATGGGTAACATT GTTTTCAATCTCACAAATCGCCGTTGGAACGAGAAGACCATCGGCTATTG TGAAAGTCATGACCAGGCTCTGGTTGGCGATAAAACCATGGCTTTCTGGT TGATGGACGCCGCTATGTATACTGACATGAGTTGTGATGGCTATCCTACG CCGACAATTGAGCGAGGCGTCGCTCTTCACAAAATGATTCGTCTGCTCAC CATGTGCCTGTCAGGTGAAGGGTACCTTACTTTTATGGGTAATGAGTTTG GGCATCCCGAATGGATTGACTTTCCGCGTGAAGGAAACGGTAATTCCTAT CAACATGCACGTCGCCGGTGGGATCTTTGTGACAATGAGGCGTTACGATA CAAACACTTGTATCAGTTTGAGAAAATGATGCACAAACTGGATGATGAAC ATCCTTTCTGTCGGTTCCAAGCACACCAGTATGTGGTCCTGTCTCATGAA GGTGACAAAGTGATTGCGATAGAGAAAGGTGATCGTTTGTTGTTCGTGTT TAACTTCCACCATTCACAATCTTACAGTGATTATCGTATTGGGACTTATT GGGGAGGTCGGTACAGGTTGGTCCTTGACTCGGATGGAATGAATACCGGT GGACATGGACGAGTACATTGGGATGTTGTACATACTACAAGAACAGAGCC GTGGCACAATAGACCATATTACCTGCAGGTTTACACCCCGGCACGAACTT GTCAAGTTTATCACTGCTATGAAACATGGGATGAAGAAAGGCAGAGGGGA GAGAGAGAAAGTCAGGCTGCGAAGAATGCAGAGACTGCTACCGGCGATGT GAAACAAGAAACTGAAAGCGACGAGAAAGCTAGTACGAAAGTCAAGGAAA TTTCCTCGGTTGCAGTTAAGATGGAGGAGAAATTGCAGTTGAATGGCTCC AAAAAGGCCTCAAGCGACGAACAGGAAGAAGTCGCCGTTAGCAAAGCGTA G back to topprotein sequence of Gvermi11859.t1 >Gvermi11859.t1 ID=Gvermi11859.t1|Name=Gvermi11859.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=767bp
MGSEDPHYVAWKDKKDGTACIRDDRYLEPFAEALRYRYAKYSEILSAIES SEKSLEQFSRGYETMGIHRVKGGVRYKEWAPSAREMYFFGEFNNWDRHAI RMERDEFGIWSCFIPETEPGVSPIPHGSKVKAAVVPHNGPWLDRNPAWAT FCVQDPNTYLYDTVFWDPPEKFKWNGPNHVKRPDSLRIYECHVGMGSNDL KVGSYREFADNVLPRIKETGYTALQIMAIMEHAYYASFGYHVTNFFAISS RCGQPEDLKYLIDKAHKLGLYVLMDVVHSHASSNSMDGINNFDGTDHHYF HEGERGRHSLWDSRLFNYGHWEVIRFLLSNLRWYMEEYHFDGFRFDGVTS MLYLHSGIGVQFTGNYSEYFGFQVDVDACVYMMLANKLVHELYPDVAITI AEDVSGMPTLCVPVERGGIGFDFRLAMAIPDMWIEVLEKQKDENWNMGNI VFNLTNRRWNEKTIGYCESHDQALVGDKTMAFWLMDAAMYTDMSCDGYPT PTIERGVALHKMIRLLTMCLSGEGYLTFMGNEFGHPEWIDFPREGNGNSY QHARRRWDLCDNEALRYKHLYQFEKMMHKLDDEHPFCRFQAHQYVVLSHE GDKVIAIEKGDRLLFVFNFHHSQSYSDYRIGTYWGGRYRLVLDSDGMNTG GHGRVHWDVVHTTRTEPWHNRPYYLQVYTPARTCQVYHCYETWDEERQRG ERESQAAKNAETATGDVKQETESDEKASTKVKEISSVAVKMEEKLQLNGS KKASSDEQEEVAVSKA* back to topmRNA from alignment at ScGOVlb_3404:2288420..2290720- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gvermi11859.t1 ID=Gvermi11859.t1|Name=Gvermi11859.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2301bp|location=Sequence derived from alignment at ScGOVlb_3404:2288420..2290720- (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGGGATCGGAGGACCCCCATTACGTCGCTTGGAAGGACAAGAAGGATGG
AACTGCTTGCATTCGTGACGACCGTTACCTCGAGCCTTTCGCCGAAGCTT
TACGCTATCGCTACGCGAAGTACTCCGAGATTTTGTCCGCAATAGAGTCC
AGTGAGAAGTCTTTGGAACAATTCTCAAGAGGCTATGAGACCATGGGTAT
CCATCGCGTGAAGGGCGGAGTGCGGTACAAAGAGTGGGCGCCAAGTGCTC
GTGAAATGTATTTCTTTGGAGAATTTAACAACTGGGATCGCCATGCTATC
CGTATGGAGCGCGATGAGTTTGGAATCTGGTCTTGCTTTATTCCCGAGAC
TGAGCCGGGCGTTTCTCCGATCCCCCATGGATCCAAGGTGAAGGCTGCTG
TTGTACCACATAATGGGCCATGGTTAGATCGCAACCCCGCATGGGCCACT
TTCTGTGTACAAGACCCTAATACCTATCTATACGACACAGTGTTCTGGGA
TCCACCGGAAAAGTTTAAGTGGAACGGTCCGAATCATGTTAAACGACCGG
ACTCGCTTCGTATTTACGAGTGCCATGTTGGTATGGGTTCAAACGATCTC
AAAGTTGGCTCGTACCGCGAGTTTGCTGATAATGTGTTGCCGCGCATAAA
AGAAACAGGGTACACCGCCTTGCAGATTATGGCCATCATGGAACATGCGT
ATTATGCGAGTTTTGGCTATCACGTCACCAATTTCTTCGCGATTAGTTCT
AGATGTGGTCAACCAGAAGACCTCAAGTATCTCATTGATAAGGCGCATAA
ACTTGGATTATACGTTCTCATGGATGTGGTTCACTCTCATGCCTCGAGCA
ACTCTATGGACGGTATTAATAACTTTGATGGCACTGACCACCACTACTTT
CATGAAGGTGAACGGGGTAGACATTCTTTGTGGGATTCCAGGCTGTTCAA
CTATGGACATTGGGAAGTGATTCGCTTTCTTTTATCTAACCTCAGATGGT
ACATGGAGGAATATCACTTTGACGGTTTTCGTTTTGATGGAGTAACATCT
ATGCTCTACTTGCATTCCGGAATTGGCGTTCAATTTACTGGAAACTACAG
CGAGTACTTTGGTTTCCAAGTTGATGTCGATGCATGTGTTTACATGATGC
TTGCTAATAAGCTTGTACATGAACTGTACCCGGATGTAGCGATTACCATT
GCGGAAGATGTCAGCGGCATGCCGACGTTGTGTGTGCCTGTTGAACGGGG
AGGAATTGGCTTTGATTTCCGACTCGCTATGGCTATTCCCGATATGTGGA
TTGAGGTTTTGGAAAAGCAAAAGGATGAAAACTGGAACATGGGTAACATT
GTTTTCAATCTCACAAATCGCCGTTGGAACGAGAAGACCATCGGCTATTG
TGAAAGTCATGACCAGGCTCTGGTTGGCGATAAAACCATGGCTTTCTGGT
TGATGGACGCCGCTATGTATACTGACATGAGTTGTGATGGCTATCCTACG
CCGACAATTGAGCGAGGCGTCGCTCTTCACAAAATGATTCGTCTGCTCAC
CATGTGCCTGTCAGGTGAAGGGTACCTTACTTTTATGGGTAATGAGTTTG
GGCATCCCGAATGGATTGACTTTCCGCGTGAAGGAAACGGTAATTCCTAT
CAACATGCACGTCGCCGGTGGGATCTTTGTGACAATGAGGCGTTACGATA
CAAACACTTGTATCAGTTTGAGAAAATGATGCACAAACTGGATGATGAAC
ATCCTTTCTGTCGGTTCCAAGCACACCAGTATGTGGTCCTGTCTCATGAA
GGTGACAAAGTGATTGCGATAGAGAAAGGTGATCGTTTGTTGTTCGTGTT
TAACTTCCACCATTCACAATCTTACAGTGATTATCGTATTGGGACTTATT
GGGGAGGTCGGTACAGGTTGGTCCTTGACTCGGATGGAATGAATACCGGT
GGACATGGACGAGTACATTGGGATGTTGTACATACTACAAGAACAGAGCC
GTGGCACAATAGACCATATTACCTGCAGGTTTACACCCCGGCACGAACTT
GTCAAGTTTATCACTGCTATGAAACATGGGATGAAGAAAGGCAGAGGGGA
GAGAGAGAAAGTCAGGCTGCGAAGAATGCAGAGACTGCTACCGGCGATGT
GAAACAAGAAACTGAAAGCGACGAGAAAGCTAGTACGAAAGTCAAGGAAA
TTTCCTCGGTTGCAGTTAAGATGGAGGAGAAATTGCAGTTGAATGGCTCC
AAAAAGGCCTCAAGCGACGAACAGGAAGAAGTCGCCGTTAGCAAAGCGTA
G back to topCoding sequence (CDS) from alignment at ScGOVlb_3404:2288420..2290720- >Gvermi11859.t1 ID=Gvermi11859.t1|Name=Gvermi11859.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2301bp|location=Sequence derived from alignment at ScGOVlb_3404:2288420..2290720- (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGGGATCGGAGGACCCCCATTACGTCGCTTGGAAGGACAAGAAGGATGG AACTGCTTGCATTCGTGACGACCGTTACCTCGAGCCTTTCGCCGAAGCTT TACGCTATCGCTACGCGAAGTACTCCGAGATTTTGTCCGCAATAGAGTCC AGTGAGAAGTCTTTGGAACAATTCTCAAGAGGCTATGAGACCATGGGTAT CCATCGCGTGAAGGGCGGAGTGCGGTACAAAGAGTGGGCGCCAAGTGCTC GTGAAATGTATTTCTTTGGAGAATTTAACAACTGGGATCGCCATGCTATC CGTATGGAGCGCGATGAGTTTGGAATCTGGTCTTGCTTTATTCCCGAGAC TGAGCCGGGCGTTTCTCCGATCCCCCATGGATCCAAGGTGAAGGCTGCTG TTGTACCACATAATGGGCCATGGTTAGATCGCAACCCCGCATGGGCCACT TTCTGTGTACAAGACCCTAATACCTATCTATACGACACAGTGTTCTGGGA TCCACCGGAAAAGTTTAAGTGGAACGGTCCGAATCATGTTAAACGACCGG ACTCGCTTCGTATTTACGAGTGCCATGTTGGTATGGGTTCAAACGATCTC AAAGTTGGCTCGTACCGCGAGTTTGCTGATAATGTGTTGCCGCGCATAAA AGAAACAGGGTACACCGCCTTGCAGATTATGGCCATCATGGAACATGCGT ATTATGCGAGTTTTGGCTATCACGTCACCAATTTCTTCGCGATTAGTTCT AGATGTGGTCAACCAGAAGACCTCAAGTATCTCATTGATAAGGCGCATAA ACTTGGATTATACGTTCTCATGGATGTGGTTCACTCTCATGCCTCGAGCA ACTCTATGGACGGTATTAATAACTTTGATGGCACTGACCACCACTACTTT CATGAAGGTGAACGGGGTAGACATTCTTTGTGGGATTCCAGGCTGTTCAA CTATGGACATTGGGAAGTGATTCGCTTTCTTTTATCTAACCTCAGATGGT ACATGGAGGAATATCACTTTGACGGTTTTCGTTTTGATGGAGTAACATCT ATGCTCTACTTGCATTCCGGAATTGGCGTTCAATTTACTGGAAACTACAG CGAGTACTTTGGTTTCCAAGTTGATGTCGATGCATGTGTTTACATGATGC TTGCTAATAAGCTTGTACATGAACTGTACCCGGATGTAGCGATTACCATT GCGGAAGATGTCAGCGGCATGCCGACGTTGTGTGTGCCTGTTGAACGGGG AGGAATTGGCTTTGATTTCCGACTCGCTATGGCTATTCCCGATATGTGGA TTGAGGTTTTGGAAAAGCAAAAGGATGAAAACTGGAACATGGGTAACATT GTTTTCAATCTCACAAATCGCCGTTGGAACGAGAAGACCATCGGCTATTG TGAAAGTCATGACCAGGCTCTGGTTGGCGATAAAACCATGGCTTTCTGGT TGATGGACGCCGCTATGTATACTGACATGAGTTGTGATGGCTATCCTACG CCGACAATTGAGCGAGGCGTCGCTCTTCACAAAATGATTCGTCTGCTCAC CATGTGCCTGTCAGGTGAAGGGTACCTTACTTTTATGGGTAATGAGTTTG GGCATCCCGAATGGATTGACTTTCCGCGTGAAGGAAACGGTAATTCCTAT CAACATGCACGTCGCCGGTGGGATCTTTGTGACAATGAGGCGTTACGATA CAAACACTTGTATCAGTTTGAGAAAATGATGCACAAACTGGATGATGAAC ATCCTTTCTGTCGGTTCCAAGCACACCAGTATGTGGTCCTGTCTCATGAA GGTGACAAAGTGATTGCGATAGAGAAAGGTGATCGTTTGTTGTTCGTGTT TAACTTCCACCATTCACAATCTTACAGTGATTATCGTATTGGGACTTATT GGGGAGGTCGGTACAGGTTGGTCCTTGACTCGGATGGAATGAATACCGGT GGACATGGACGAGTACATTGGGATGTTGTACATACTACAAGAACAGAGCC GTGGCACAATAGACCATATTACCTGCAGGTTTACACCCCGGCACGAACTT GTCAAGTTTATCACTGCTATGAAACATGGGATGAAGAAAGGCAGAGGGGA GAGAGAGAAAGTCAGGCTGCGAAGAATGCAGAGACTGCTACCGGCGATGT GAAACAAGAAACTGAAAGCGACGAGAAAGCTAGTACGAAAGTCAAGGAAA TTTCCTCGGTTGCAGTTAAGATGGAGGAGAAATTGCAGTTGAATGGCTCC AAAAAGGCCTCAAGCGACGAACAGGAAGAAGTCGCCGTTAGCAAAGCGTA G back to top
|