Gvermi11853.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11853.t1
Unique NameGvermi11853.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length154
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2273172..2273633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109760.SPPG_06203T0
Preferred nameubi3
PFAMsRibosomal_S27,ubiquitin
Max annot lvl4751|Fungi
KEGG koko:K02977
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0000028,GO:0002109,GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0016070,GO:0016072,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030490,GO:0031386,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue6.81e-42
EggNOG OGsCOG5272@1|root,KOG0004@2759|Eukaryota,38CAM@33154|Opisthokonta,3NWYF@4751|Fungi
Descriptionribosomal protein
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11853Gvermi11853Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2273172..2273633 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11853.t1.stop1Gvermi11853.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2273172..2273174 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11853.t1.CDS1Gvermi11853.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2273172..2273633 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11853.t1.exon1Gvermi11853.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2273172..2273633 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11853.t1.start1Gvermi11853.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2273631..2273633 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11853.t1Gvermi11853.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2273172..2273633 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11853.t1 ID=Gvermi11853.t1|Name=Gvermi11853.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=154bp
MAPRQVFLKTISGSTSVLSSVETTGQLFAAAAEVEHLSIADLRLTYASRD
LRSEDQSLEELGIFDGANIFALARLRGGGKKRKKKTYTKPKKIKHKHKTI
KMAVLNYYKIDGDGNIERLRRECPADTCGAGVFMAQHEDRVYCGKCSLTY
VQS*
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spliced messenger RNA

>Gvermi11853.t1 ID=Gvermi11853.t1|Name=Gvermi11853.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=462bp|location=Sequence derived from alignment at ScGOVlb_3404:2273172..2273633- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCGCGACAAGTTTTCCTAAAAACGATCTCCGGCAGCACGTCGGT
GCTTTCCTCCGTCGAGACTACTGGCCAACTGTTTGCCGCGGCCGCTGAAG
TGGAACACCTTTCCATTGCTGATTTACGTCTCACTTATGCTTCTCGTGAT
TTGAGGTCTGAAGATCAATCGCTTGAGGAGCTTGGTATCTTTGATGGTGC
CAACATTTTCGCTCTAGCCAGGCTTCGTGGAGGTGGAAAGAAGCGTAAGA
AGAAGACCTACACAAAGCCGAAGAAAATCAAGCACAAACACAAAACCATC
AAGATGGCCGTGCTCAACTATTACAAAATTGACGGCGATGGAAATATCGA
GCGATTGAGGAGAGAATGCCCGGCTGATACCTGCGGAGCTGGTGTCTTTA
TGGCTCAACACGAGGATCGCGTCTACTGTGGTAAATGTAGTTTGACATAT
GTCCAGTCGTAA
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protein sequence of Gvermi11853.t1

>Gvermi11853.t1 ID=Gvermi11853.t1|Name=Gvermi11853.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=154bp
MAPRQVFLKTISGSTSVLSSVETTGQLFAAAAEVEHLSIADLRLTYASRD
LRSEDQSLEELGIFDGANIFALARLRGGGKKRKKKTYTKPKKIKHKHKTI
KMAVLNYYKIDGDGNIERLRRECPADTCGAGVFMAQHEDRVYCGKCSLTY
VQS*
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mRNA from alignment at ScGOVlb_3404:2273172..2273633-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11853.t1 ID=Gvermi11853.t1|Name=Gvermi11853.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=462bp|location=Sequence derived from alignment at ScGOVlb_3404:2273172..2273633- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTCCGCGACAAGTTTTCCTAAAAACGATCTCCGGCAGCACGTCGGT
GCTTTCCTCCGTCGAGACTACTGGCCAACTGTTTGCCGCGGCCGCTGAAG
TGGAACACCTTTCCATTGCTGATTTACGTCTCACTTATGCTTCTCGTGAT
TTGAGGTCTGAAGATCAATCGCTTGAGGAGCTTGGTATCTTTGATGGTGC
CAACATTTTCGCTCTAGCCAGGCTTCGTGGAGGTGGAAAGAAGCGTAAGA
AGAAGACCTACACAAAGCCGAAGAAAATCAAGCACAAACACAAAACCATC
AAGATGGCCGTGCTCAACTATTACAAAATTGACGGCGATGGAAATATCGA
GCGATTGAGGAGAGAATGCCCGGCTGATACCTGCGGAGCTGGTGTCTTTA
TGGCTCAACACGAGGATCGCGTCTACTGTGGTAAATGTAGTTTGACATAT
GTCCAGTCGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2273172..2273633-

>Gvermi11853.t1 ID=Gvermi11853.t1|Name=Gvermi11853.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=462bp|location=Sequence derived from alignment at ScGOVlb_3404:2273172..2273633- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTCCGCGACAAGTTTTCCTAAAAACGATCTCCGGCAGCACGTCGGT
GCTTTCCTCCGTCGAGACTACTGGCCAACTGTTTGCCGCGGCCGCTGAAG
TGGAACACCTTTCCATTGCTGATTTACGTCTCACTTATGCTTCTCGTGAT
TTGAGGTCTGAAGATCAATCGCTTGAGGAGCTTGGTATCTTTGATGGTGC
CAACATTTTCGCTCTAGCCAGGCTTCGTGGAGGTGGAAAGAAGCGTAAGA
AGAAGACCTACACAAAGCCGAAGAAAATCAAGCACAAACACAAAACCATC
AAGATGGCCGTGCTCAACTATTACAAAATTGACGGCGATGGAAATATCGA
GCGATTGAGGAGAGAATGCCCGGCTGATACCTGCGGAGCTGGTGTCTTTA
TGGCTCAACACGAGGATCGCGTCTACTGTGGTAAATGTAGTTTGACATAT
GTCCAGTCGTAA
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