Gvermi11852.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11852.t1
Unique NameGvermi11852.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length328
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2271313..2272364 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMI065CT
Preferred nameMRS2
PFAMsCorA
Max annot lvl2759|Eukaryota
KEGG rclassRC00537,RC00983
KEGG koko:K01053,ko:K12765,ko:K16075
KEGG TC1.A.35.5
KEGG ReactionR01519,R02933,R03751
KEGG Pathwayko00030,ko00053,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,ko04113,map00030,map00053,map00930,map01100,map01110,map01120,map01130,map01200,map01220,map04113
KEGG ModuleM00129
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006082,GO:0006089,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0008150,GO:0008152,GO:0008324,GO:0009987,GO:0015075,GO:0015095,GO:0015318,GO:0015693,GO:0016020,GO:0016021,GO:0019752,GO:0019866,GO:0022857,GO:0022890,GO:0030001,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0032787,GO:0034220,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045016,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0070838,GO:0071704,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:1901615,GO:1903830,GO:1990542
Evalue7.52e-83
EggNOG OGsKOG2662@1|root,KOG2662@2759|Eukaryota
EC2.7.11.1,3.1.1.17
Descriptionmagnesium ion transmembrane transporter activity
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko02000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11852Gvermi11852Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2271313..2272364 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11852.t1Gvermi11852.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2271313..2272364 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11852.t1.stop1Gvermi11852.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2271313..2271315 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11852.t1.CDS1Gvermi11852.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2271313..2271726 -
Gvermi11852.t1.CDS2Gvermi11852.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2271795..2272364 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11852.t1.exon1Gvermi11852.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2271313..2271726 -
Gvermi11852.t1.exon2Gvermi11852.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2271795..2272364 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11852.t1.intron1Gvermi11852.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 2271727..2271794 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11852.t1.start1Gvermi11852.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2272362..2272364 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11852.t1 ID=Gvermi11852.t1|Name=Gvermi11852.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=328bp
MRMEAPAAVPLAAVELFAKKPPKGTFIQKADAAQELGLMVRDLRVVDPSF
RSQAPAILPRQSAIIVHLAHVRIIVLSDRVLAFDPTNPAVEYFLPKLQRK
LDAPTHPMPFEFRAIEAVLVEIVSTFNATIGTLIPSLDLVLDTLSTTQDF
GGGTVQNCMDRLLPLENALNDFSSKVSQTRAALNEVLVSDEDMSLMYLSS
YKETGTRRRIDQHDEVEMMLENYMKQIDTVYSEVTSAQQAIKATENATQI
RLDAMRNRVLRLDIFLNLGAVSVGVGGLVAGLFGMNLLSGMEEHPAAFWI
VSGLSFATSIMFFRGVLAVLRMRRIFH*
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spliced messenger RNA

>Gvermi11852.t1 ID=Gvermi11852.t1|Name=Gvermi11852.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=984bp|location=Sequence derived from alignment at ScGOVlb_3404:2271313..2272364- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGATGGAAGCGCCGGCAGCCGTGCCGTTGGCTGCGGTAGAACTGTT
TGCTAAGAAGCCTCCAAAAGGAACCTTTATTCAGAAGGCAGATGCTGCGC
AAGAGCTTGGCTTGATGGTACGCGATCTTCGCGTGGTAGATCCCAGTTTC
CGATCGCAGGCCCCAGCAATTCTGCCACGTCAAAGTGCAATAATTGTCCA
TTTGGCACATGTGCGAATAATAGTCCTATCCGACCGTGTACTTGCGTTTG
ATCCCACGAATCCCGCCGTTGAATACTTTCTTCCAAAACTTCAACGCAAA
CTGGATGCTCCCACGCATCCGATGCCTTTTGAGTTCAGAGCCATAGAAGC
TGTTCTTGTGGAAATTGTTTCAACATTCAATGCTACGATAGGGACTCTTA
TTCCCAGTTTGGATCTTGTCCTCGACACCCTATCTACTACTCAAGATTTT
GGTGGAGGAACAGTGCAAAACTGCATGGATCGTTTACTTCCTTTGGAAAA
CGCTCTGAATGATTTCAGCTCAAAGGTGTCCCAAACACGAGCGGCCCTAA
ACGAAGTTCTGGTGTCTGACGAAGACATGAGCCTCATGTACCTTTCATCT
TATAAAGAGACCGGAACCAGAAGAAGAATCGATCAACATGATGAAGTCGA
AATGATGCTAGAGAACTACATGAAACAAATTGATACGGTATACAGCGAAG
TCACGTCTGCTCAACAGGCTATTAAAGCAACTGAAAACGCAACGCAAATC
AGGTTAGATGCTATGCGTAATCGAGTGCTCAGACTAGATATTTTTCTAAA
CCTGGGAGCAGTGAGCGTTGGTGTCGGAGGCCTGGTTGCAGGGCTGTTTG
GAATGAATCTGTTGAGTGGTATGGAAGAGCACCCTGCAGCTTTTTGGATA
GTTAGTGGATTGTCTTTTGCCACTTCAATCATGTTCTTTCGAGGGGTTCT
GGCTGTTTTACGGATGCGCCGCATCTTCCACTAA
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protein sequence of Gvermi11852.t1

>Gvermi11852.t1 ID=Gvermi11852.t1|Name=Gvermi11852.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=328bp
MRMEAPAAVPLAAVELFAKKPPKGTFIQKADAAQELGLMVRDLRVVDPSF
RSQAPAILPRQSAIIVHLAHVRIIVLSDRVLAFDPTNPAVEYFLPKLQRK
LDAPTHPMPFEFRAIEAVLVEIVSTFNATIGTLIPSLDLVLDTLSTTQDF
GGGTVQNCMDRLLPLENALNDFSSKVSQTRAALNEVLVSDEDMSLMYLSS
YKETGTRRRIDQHDEVEMMLENYMKQIDTVYSEVTSAQQAIKATENATQI
RLDAMRNRVLRLDIFLNLGAVSVGVGGLVAGLFGMNLLSGMEEHPAAFWI
VSGLSFATSIMFFRGVLAVLRMRRIFH*
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mRNA from alignment at ScGOVlb_3404:2271313..2272364-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11852.t1 ID=Gvermi11852.t1|Name=Gvermi11852.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1052bp|location=Sequence derived from alignment at ScGOVlb_3404:2271313..2272364- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGGATGGAAGCGCCGGCAGCCGTGCCGTTGGCTGCGGTAGAACTGTT
TGCTAAGAAGCCTCCAAAAGGAACCTTTATTCAGAAGGCAGATGCTGCGC
AAGAGCTTGGCTTGATGGTACGCGATCTTCGCGTGGTAGATCCCAGTTTC
CGATCGCAGGCCCCAGCAATTCTGCCACGTCAAAGTGCAATAATTGTCCA
TTTGGCACATGTGCGAATAATAGTCCTATCCGACCGTGTACTTGCGTTTG
ATCCCACGAATCCCGCCGTTGAATACTTTCTTCCAAAACTTCAACGCAAA
CTGGATGCTCCCACGCATCCGATGCCTTTTGAGTTCAGAGCCATAGAAGC
TGTTCTTGTGGAAATTGTTTCAACATTCAATGCTACGATAGGGACTCTTA
TTCCCAGTTTGGATCTTGTCCTCGACACCCTATCTACTACTCAAGATTTT
GGTGGAGGAACAGTGCAAAACTGCATGGATCGTTTACTTCCTTTGGAAAA
CGCTCTGAATGATTTCAGCTCAAAGGTGTCCCAAACACGAGCGGCCCTAA
ACGAAGTTCTGGTGTCTGACGTAAGTAGGGGCCTCTTTTCTTCGTTCAGA
CTGTATCGTTTCGAAATACACTAACACTTACATCACAGGAAGACATGAGC
CTCATGTACCTTTCATCTTATAAAGAGACCGGAACCAGAAGAAGAATCGA
TCAACATGATGAAGTCGAAATGATGCTAGAGAACTACATGAAACAAATTG
ATACGGTATACAGCGAAGTCACGTCTGCTCAACAGGCTATTAAAGCAACT
GAAAACGCAACGCAAATCAGGTTAGATGCTATGCGTAATCGAGTGCTCAG
ACTAGATATTTTTCTAAACCTGGGAGCAGTGAGCGTTGGTGTCGGAGGCC
TGGTTGCAGGGCTGTTTGGAATGAATCTGTTGAGTGGTATGGAAGAGCAC
CCTGCAGCTTTTTGGATAGTTAGTGGATTGTCTTTTGCCACTTCAATCAT
GTTCTTTCGAGGGGTTCTGGCTGTTTTACGGATGCGCCGCATCTTCCACT
AA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2271313..2272364-

>Gvermi11852.t1 ID=Gvermi11852.t1|Name=Gvermi11852.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=984bp|location=Sequence derived from alignment at ScGOVlb_3404:2271313..2272364- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGGATGGAAGCGCCGGCAGCCGTGCCGTTGGCTGCGGTAGAACTGTT
TGCTAAGAAGCCTCCAAAAGGAACCTTTATTCAGAAGGCAGATGCTGCGC
AAGAGCTTGGCTTGATGGTACGCGATCTTCGCGTGGTAGATCCCAGTTTC
CGATCGCAGGCCCCAGCAATTCTGCCACGTCAAAGTGCAATAATTGTCCA
TTTGGCACATGTGCGAATAATAGTCCTATCCGACCGTGTACTTGCGTTTG
ATCCCACGAATCCCGCCGTTGAATACTTTCTTCCAAAACTTCAACGCAAA
CTGGATGCTCCCACGCATCCGATGCCTTTTGAGTTCAGAGCCATAGAAGC
TGTTCTTGTGGAAATTGTTTCAACATTCAATGCTACGATAGGGACTCTTA
TTCCCAGTTTGGATCTTGTCCTCGACACCCTATCTACTACTCAAGATTTT
GGTGGAGGAACAGTGCAAAACTGCATGGATCGTTTACTTCCTTTGGAAAA
CGCTCTGAATGATTTCAGCTCAAAGGTGTCCCAAACACGAGCGGCCCTAA
ACGAAGTTCTGGTGTCTGACGAAGACATGAGCCTCATGTACCTTTCATCT
TATAAAGAGACCGGAACCAGAAGAAGAATCGATCAACATGATGAAGTCGA
AATGATGCTAGAGAACTACATGAAACAAATTGATACGGTATACAGCGAAG
TCACGTCTGCTCAACAGGCTATTAAAGCAACTGAAAACGCAACGCAAATC
AGGTTAGATGCTATGCGTAATCGAGTGCTCAGACTAGATATTTTTCTAAA
CCTGGGAGCAGTGAGCGTTGGTGTCGGAGGCCTGGTTGCAGGGCTGTTTG
GAATGAATCTGTTGAGTGGTATGGAAGAGCACCCTGCAGCTTTTTGGATA
GTTAGTGGATTGTCTTTTGCCACTTCAATCATGTTCTTTCGAGGGGTTCT
GGCTGTTTTACGGATGCGCCGCATCTTCCACTAA
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