Gvermi11848.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11848.t1
Unique NameGvermi11848.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length213
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2256278..2256916 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11848Gvermi11848Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2256278..2256916 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11848.t1.stop1Gvermi11848.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2256278..2256280 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11848.t1.CDS1Gvermi11848.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2256278..2256916 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11848.t1.exon1Gvermi11848.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2256278..2256916 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11848.t1.start1Gvermi11848.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2256914..2256916 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11848.t1Gvermi11848.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2256278..2256916 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11848.t1 ID=Gvermi11848.t1|Name=Gvermi11848.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=213bp
MDALSLQRPLPPAYDAAALGFDARTRLPPAHALPLFDAAKNCARARFHQE
TGDAARRALRHAVREPAVVDSFPRHLGALPACAGLAAAARLALGRRFCVR
WVVDAPVLHAAGVPFVGAAYAAGFVPHLDVEHQSRVHFDSRPDLSDLALR
RLLLRLRFAADQHILPAGHVTPTDVVRLPSEHDEDFNCFDLFALLTTPFY
PHIKLQRVDSSR*
back to top

spliced messenger RNA

>Gvermi11848.t1 ID=Gvermi11848.t1|Name=Gvermi11848.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=639bp|location=Sequence derived from alignment at ScGOVlb_3404:2256278..2256916- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCGCTCTCGCTGCAACGCCCGCTGCCGCCCGCCTATGACGCCGC
CGCCCTCGGCTTCGACGCGCGCACGCGCCTGCCGCCCGCGCACGCGCTAC
CGCTCTTCGACGCGGCCAAGAACTGCGCGCGCGCACGCTTCCACCAGGAG
ACGGGCGACGCCGCGCGGCGCGCGCTGCGCCACGCCGTGCGAGAGCCGGC
CGTCGTCGACAGCTTCCCGCGCCACCTCGGCGCGCTGCCTGCGTGCGCGG
GGCTGGCGGCCGCCGCGCGCCTCGCGCTCGGCCGCCGCTTCTGCGTGCGC
TGGGTCGTTGACGCCCCCGTGCTGCACGCCGCCGGCGTGCCGTTTGTGGG
CGCCGCGTACGCCGCCGGCTTCGTGCCGCACCTCGATGTGGAGCATCAGT
CGCGCGTGCACTTCGATTCGCGCCCCGACCTGTCCGACCTTGCATTGCGC
CGCTTGCTTCTGCGCCTGCGCTTTGCTGCTGATCAGCACATTTTGCCGGC
AGGCCATGTCACCCCGACCGACGTCGTCCGTCTCCCCAGTGAGCACGACG
AGGACTTTAACTGCTTTGACTTGTTTGCGTTGTTGACCACGCCCTTTTAT
CCCCATATCAAGCTCCAGAGAGTCGATAGCTCTCGCTAG
back to top

protein sequence of Gvermi11848.t1

>Gvermi11848.t1 ID=Gvermi11848.t1|Name=Gvermi11848.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=213bp
MDALSLQRPLPPAYDAAALGFDARTRLPPAHALPLFDAAKNCARARFHQE
TGDAARRALRHAVREPAVVDSFPRHLGALPACAGLAAAARLALGRRFCVR
WVVDAPVLHAAGVPFVGAAYAAGFVPHLDVEHQSRVHFDSRPDLSDLALR
RLLLRLRFAADQHILPAGHVTPTDVVRLPSEHDEDFNCFDLFALLTTPFY
PHIKLQRVDSSR*
back to top

mRNA from alignment at ScGOVlb_3404:2256278..2256916-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11848.t1 ID=Gvermi11848.t1|Name=Gvermi11848.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=639bp|location=Sequence derived from alignment at ScGOVlb_3404:2256278..2256916- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACGCGCTCTCGCTGCAACGCCCGCTGCCGCCCGCCTATGACGCCGC
CGCCCTCGGCTTCGACGCGCGCACGCGCCTGCCGCCCGCGCACGCGCTAC
CGCTCTTCGACGCGGCCAAGAACTGCGCGCGCGCACGCTTCCACCAGGAG
ACGGGCGACGCCGCGCGGCGCGCGCTGCGCCACGCCGTGCGAGAGCCGGC
CGTCGTCGACAGCTTCCCGCGCCACCTCGGCGCGCTGCCTGCGTGCGCGG
GGCTGGCGGCCGCCGCGCGCCTCGCGCTCGGCCGCCGCTTCTGCGTGCGC
TGGGTCGTTGACGCCCCCGTGCTGCACGCCGCCGGCGTGCCGTTTGTGGG
CGCCGCGTACGCCGCCGGCTTCGTGCCGCACCTCGATGTGGAGCATCAGT
CGCGCGTGCACTTCGATTCGCGCCCCGACCTGTCCGACCTTGCATTGCGC
CGCTTGCTTCTGCGCCTGCGCTTTGCTGCTGATCAGCACATTTTGCCGGC
AGGCCATGTCACCCCGACCGACGTCGTCCGTCTCCCCAGTGAGCACGACG
AGGACTTTAACTGCTTTGACTTGTTTGCGTTGTTGACCACGCCCTTTTAT
CCCCATATCAAGCTCCAGAGAGTCGATAGCTCTCGCTAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:2256278..2256916-

>Gvermi11848.t1 ID=Gvermi11848.t1|Name=Gvermi11848.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=639bp|location=Sequence derived from alignment at ScGOVlb_3404:2256278..2256916- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACGCGCTCTCGCTGCAACGCCCGCTGCCGCCCGCCTATGACGCCGC
CGCCCTCGGCTTCGACGCGCGCACGCGCCTGCCGCCCGCGCACGCGCTAC
CGCTCTTCGACGCGGCCAAGAACTGCGCGCGCGCACGCTTCCACCAGGAG
ACGGGCGACGCCGCGCGGCGCGCGCTGCGCCACGCCGTGCGAGAGCCGGC
CGTCGTCGACAGCTTCCCGCGCCACCTCGGCGCGCTGCCTGCGTGCGCGG
GGCTGGCGGCCGCCGCGCGCCTCGCGCTCGGCCGCCGCTTCTGCGTGCGC
TGGGTCGTTGACGCCCCCGTGCTGCACGCCGCCGGCGTGCCGTTTGTGGG
CGCCGCGTACGCCGCCGGCTTCGTGCCGCACCTCGATGTGGAGCATCAGT
CGCGCGTGCACTTCGATTCGCGCCCCGACCTGTCCGACCTTGCATTGCGC
CGCTTGCTTCTGCGCCTGCGCTTTGCTGCTGATCAGCACATTTTGCCGGC
AGGCCATGTCACCCCGACCGACGTCGTCCGTCTCCCCAGTGAGCACGACG
AGGACTTTAACTGCTTTGACTTGTTTGCGTTGTTGACCACGCCCTTTTAT
CCCCATATCAAGCTCCAGAGAGTCGATAGCTCTCGCTAG
back to top