Gvermi11844.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11844.t1
Unique NameGvermi11844.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length609
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2241474..2243300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1206733.BAGC01000040_gene1444
PFAMsGMC_oxred_C,GMC_oxred_N
Max annot lvl201174|Actinobacteria
KEGG rclassRC00087
KEGG koko:K00108
KEGG ReactionR01025
KEGG Pathwayko00260,ko01100,map00260,map01100
KEGG ModuleM00555
Evalue1.58e-41
EggNOG OGsCOG2303@1|root,COG2303@2|Bacteria,2GJAU@201174|Actinobacteria,4FU19@85025|Nocardiaceae
EC1.1.99.1
DescriptionBelongs to the GMC oxidoreductase family
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11844Gvermi11844Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2241474..2243300 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11844.t1.stop1Gvermi11844.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2241474..2241476 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11844.t1.CDS1Gvermi11844.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2241474..2243300 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11844.t1.exon1Gvermi11844.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2241474..2243300 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11844.t1.start1Gvermi11844.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2243298..2243300 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11844.t1Gvermi11844.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2241474..2243300 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11844.t1 ID=Gvermi11844.t1|Name=Gvermi11844.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=609bp
MRGDATNASSPPPNTSSYTTPPHESATSQPPFDPHIERVPRSLWYILRPR
RSTGFVLLVVIAVVIMIALVLTLAFVLSGRSAAAPSTRGAWDYVIVGAGT
SGCVLASRLCSAFPQRKVLLLERGLPRSEETDFLVRAPRMLFNLWSDRSA
TEAYGSEPDEGLQGRSTTVLTGITLGGSSSINGMQWTVPLPGTVETWNIN
GLDTESADTYYRKAYEKIAYSTPARPLQYAQDYIDASNRAGFERNDDPFQ
QPPRSAWQNFMNINDEFRRNDACAAYLEPVRETFCAQNLKLMQSQTASKI
MFSRVKRDGRRIAVAVKSIDSVNRNVTMIHKARRQIILAAGPYGSAQLLQ
LSGIGPKATLDAAGIEQVLDLPVGEQCVGRANAAVSSTYTGVPDEEVNNV
TLVNSAQQREIWEMGMGGVLGTPVTASNGRVGEDGYFNSAFVPFFPGAPE
LRTNCFHNTNNTGTLRIRDADPFSTPKVKLNLLRDVEDVRRLQRCLQSAI
NIHNSFPEEFNMTLTQPANGIVDEEYIRSTANTGSHFVGCCGVGDVLDGD
LRVKGTLGLRVVDASSLKTMPRSSGPAASVLMLAEYMARVIRSEAPEHGR
ERCFGNCS*
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spliced messenger RNA

>Gvermi11844.t1 ID=Gvermi11844.t1|Name=Gvermi11844.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1827bp|location=Sequence derived from alignment at ScGOVlb_3404:2241474..2243300- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTGGAGATGCCACCAACGCCTCGTCCCCACCGCCCAATACATCCTC
CTACACGACACCACCCCATGAATCCGCTACATCACAACCTCCATTTGATC
CGCACATCGAGCGAGTCCCTCGCTCCCTGTGGTATATCTTGCGTCCGAGG
CGGAGCACGGGCTTCGTTCTGCTTGTGGTTATCGCCGTCGTCATCATGAT
AGCTCTGGTTCTGACGCTTGCATTCGTGCTTTCTGGTCGTTCAGCAGCCG
CGCCTTCAACTCGGGGAGCTTGGGATTATGTCATTGTAGGAGCCGGAACT
TCTGGCTGTGTTTTGGCGTCTCGCTTGTGTTCTGCCTTTCCGCAGCGAAA
GGTTTTGCTCCTGGAACGAGGTCTACCTCGGTCAGAGGAAACCGATTTTT
TGGTCAGGGCACCAAGAATGCTGTTTAACTTGTGGTCCGATCGTTCTGCT
ACTGAAGCCTACGGTTCAGAGCCTGATGAAGGTCTACAAGGGCGTTCTAC
GACCGTGCTTACTGGCATAACTCTGGGTGGTTCTTCGTCCATAAACGGCA
TGCAATGGACAGTGCCGCTTCCAGGCACCGTGGAGACGTGGAACATCAAC
GGTCTCGACACGGAAAGCGCTGATACGTATTACCGAAAGGCGTACGAAAA
GATTGCATACTCAACTCCCGCTCGTCCACTGCAGTACGCTCAGGACTATA
TCGACGCAAGCAATCGCGCCGGTTTTGAACGGAATGACGACCCTTTTCAA
CAGCCACCGAGATCCGCATGGCAGAACTTTATGAACATCAACGACGAGTT
TCGCCGCAACGACGCATGCGCTGCGTATTTAGAACCGGTTCGAGAAACGT
TTTGCGCGCAGAATCTGAAGCTCATGCAGTCGCAGACAGCCTCTAAAATT
ATGTTTTCTCGCGTTAAACGGGATGGAAGACGCATCGCTGTGGCTGTCAA
GTCCATCGATTCGGTGAATCGAAACGTCACAATGATACACAAAGCTCGCC
GCCAGATCATACTTGCGGCCGGGCCATACGGTTCAGCTCAACTATTGCAG
TTGTCAGGAATTGGACCGAAAGCAACCCTAGACGCGGCCGGAATCGAACA
AGTGCTCGACCTGCCGGTGGGTGAACAATGTGTGGGGCGGGCCAATGCGG
CAGTTTCATCCACGTATACAGGCGTGCCTGACGAAGAAGTAAACAATGTA
ACATTGGTCAATTCTGCTCAGCAACGTGAAATTTGGGAGATGGGTATGGG
TGGAGTGTTGGGAACTCCAGTCACGGCTTCTAATGGACGTGTGGGAGAGG
ATGGTTACTTCAACTCTGCTTTTGTACCATTCTTCCCAGGGGCGCCTGAA
CTGCGAACAAATTGTTTCCACAACACGAACAATACGGGAACACTACGCAT
TCGAGATGCTGACCCGTTCAGCACGCCGAAGGTAAAGCTTAATTTGTTGC
GGGACGTTGAAGATGTTCGGCGGCTTCAAAGATGTTTGCAAAGCGCTATC
AACATTCACAACAGCTTTCCTGAAGAATTCAACATGACATTAACACAGCC
TGCTAACGGCATAGTGGATGAAGAATACATTCGTAGCACAGCAAACACGG
GCTCTCATTTCGTGGGATGCTGTGGTGTGGGCGACGTGCTTGACGGGGAT
CTCAGAGTGAAGGGCACTCTCGGGTTGAGAGTTGTGGACGCTTCGTCTCT
AAAAACCATGCCGCGCTCGTCGGGCCCGGCGGCTTCTGTGTTGATGCTCG
CCGAATACATGGCACGCGTAATTAGATCGGAGGCACCTGAGCACGGTCGT
GAACGTTGTTTCGGAAACTGCTCATGA
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protein sequence of Gvermi11844.t1

>Gvermi11844.t1 ID=Gvermi11844.t1|Name=Gvermi11844.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=609bp
MRGDATNASSPPPNTSSYTTPPHESATSQPPFDPHIERVPRSLWYILRPR
RSTGFVLLVVIAVVIMIALVLTLAFVLSGRSAAAPSTRGAWDYVIVGAGT
SGCVLASRLCSAFPQRKVLLLERGLPRSEETDFLVRAPRMLFNLWSDRSA
TEAYGSEPDEGLQGRSTTVLTGITLGGSSSINGMQWTVPLPGTVETWNIN
GLDTESADTYYRKAYEKIAYSTPARPLQYAQDYIDASNRAGFERNDDPFQ
QPPRSAWQNFMNINDEFRRNDACAAYLEPVRETFCAQNLKLMQSQTASKI
MFSRVKRDGRRIAVAVKSIDSVNRNVTMIHKARRQIILAAGPYGSAQLLQ
LSGIGPKATLDAAGIEQVLDLPVGEQCVGRANAAVSSTYTGVPDEEVNNV
TLVNSAQQREIWEMGMGGVLGTPVTASNGRVGEDGYFNSAFVPFFPGAPE
LRTNCFHNTNNTGTLRIRDADPFSTPKVKLNLLRDVEDVRRLQRCLQSAI
NIHNSFPEEFNMTLTQPANGIVDEEYIRSTANTGSHFVGCCGVGDVLDGD
LRVKGTLGLRVVDASSLKTMPRSSGPAASVLMLAEYMARVIRSEAPEHGR
ERCFGNCS*
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mRNA from alignment at ScGOVlb_3404:2241474..2243300-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11844.t1 ID=Gvermi11844.t1|Name=Gvermi11844.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1827bp|location=Sequence derived from alignment at ScGOVlb_3404:2241474..2243300- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGTGGAGATGCCACCAACGCCTCGTCCCCACCGCCCAATACATCCTC
CTACACGACACCACCCCATGAATCCGCTACATCACAACCTCCATTTGATC
CGCACATCGAGCGAGTCCCTCGCTCCCTGTGGTATATCTTGCGTCCGAGG
CGGAGCACGGGCTTCGTTCTGCTTGTGGTTATCGCCGTCGTCATCATGAT
AGCTCTGGTTCTGACGCTTGCATTCGTGCTTTCTGGTCGTTCAGCAGCCG
CGCCTTCAACTCGGGGAGCTTGGGATTATGTCATTGTAGGAGCCGGAACT
TCTGGCTGTGTTTTGGCGTCTCGCTTGTGTTCTGCCTTTCCGCAGCGAAA
GGTTTTGCTCCTGGAACGAGGTCTACCTCGGTCAGAGGAAACCGATTTTT
TGGTCAGGGCACCAAGAATGCTGTTTAACTTGTGGTCCGATCGTTCTGCT
ACTGAAGCCTACGGTTCAGAGCCTGATGAAGGTCTACAAGGGCGTTCTAC
GACCGTGCTTACTGGCATAACTCTGGGTGGTTCTTCGTCCATAAACGGCA
TGCAATGGACAGTGCCGCTTCCAGGCACCGTGGAGACGTGGAACATCAAC
GGTCTCGACACGGAAAGCGCTGATACGTATTACCGAAAGGCGTACGAAAA
GATTGCATACTCAACTCCCGCTCGTCCACTGCAGTACGCTCAGGACTATA
TCGACGCAAGCAATCGCGCCGGTTTTGAACGGAATGACGACCCTTTTCAA
CAGCCACCGAGATCCGCATGGCAGAACTTTATGAACATCAACGACGAGTT
TCGCCGCAACGACGCATGCGCTGCGTATTTAGAACCGGTTCGAGAAACGT
TTTGCGCGCAGAATCTGAAGCTCATGCAGTCGCAGACAGCCTCTAAAATT
ATGTTTTCTCGCGTTAAACGGGATGGAAGACGCATCGCTGTGGCTGTCAA
GTCCATCGATTCGGTGAATCGAAACGTCACAATGATACACAAAGCTCGCC
GCCAGATCATACTTGCGGCCGGGCCATACGGTTCAGCTCAACTATTGCAG
TTGTCAGGAATTGGACCGAAAGCAACCCTAGACGCGGCCGGAATCGAACA
AGTGCTCGACCTGCCGGTGGGTGAACAATGTGTGGGGCGGGCCAATGCGG
CAGTTTCATCCACGTATACAGGCGTGCCTGACGAAGAAGTAAACAATGTA
ACATTGGTCAATTCTGCTCAGCAACGTGAAATTTGGGAGATGGGTATGGG
TGGAGTGTTGGGAACTCCAGTCACGGCTTCTAATGGACGTGTGGGAGAGG
ATGGTTACTTCAACTCTGCTTTTGTACCATTCTTCCCAGGGGCGCCTGAA
CTGCGAACAAATTGTTTCCACAACACGAACAATACGGGAACACTACGCAT
TCGAGATGCTGACCCGTTCAGCACGCCGAAGGTAAAGCTTAATTTGTTGC
GGGACGTTGAAGATGTTCGGCGGCTTCAAAGATGTTTGCAAAGCGCTATC
AACATTCACAACAGCTTTCCTGAAGAATTCAACATGACATTAACACAGCC
TGCTAACGGCATAGTGGATGAAGAATACATTCGTAGCACAGCAAACACGG
GCTCTCATTTCGTGGGATGCTGTGGTGTGGGCGACGTGCTTGACGGGGAT
CTCAGAGTGAAGGGCACTCTCGGGTTGAGAGTTGTGGACGCTTCGTCTCT
AAAAACCATGCCGCGCTCGTCGGGCCCGGCGGCTTCTGTGTTGATGCTCG
CCGAATACATGGCACGCGTAATTAGATCGGAGGCACCTGAGCACGGTCGT
GAACGTTGTTTCGGAAACTGCTCATGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2241474..2243300-

>Gvermi11844.t1 ID=Gvermi11844.t1|Name=Gvermi11844.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1827bp|location=Sequence derived from alignment at ScGOVlb_3404:2241474..2243300- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGTGGAGATGCCACCAACGCCTCGTCCCCACCGCCCAATACATCCTC
CTACACGACACCACCCCATGAATCCGCTACATCACAACCTCCATTTGATC
CGCACATCGAGCGAGTCCCTCGCTCCCTGTGGTATATCTTGCGTCCGAGG
CGGAGCACGGGCTTCGTTCTGCTTGTGGTTATCGCCGTCGTCATCATGAT
AGCTCTGGTTCTGACGCTTGCATTCGTGCTTTCTGGTCGTTCAGCAGCCG
CGCCTTCAACTCGGGGAGCTTGGGATTATGTCATTGTAGGAGCCGGAACT
TCTGGCTGTGTTTTGGCGTCTCGCTTGTGTTCTGCCTTTCCGCAGCGAAA
GGTTTTGCTCCTGGAACGAGGTCTACCTCGGTCAGAGGAAACCGATTTTT
TGGTCAGGGCACCAAGAATGCTGTTTAACTTGTGGTCCGATCGTTCTGCT
ACTGAAGCCTACGGTTCAGAGCCTGATGAAGGTCTACAAGGGCGTTCTAC
GACCGTGCTTACTGGCATAACTCTGGGTGGTTCTTCGTCCATAAACGGCA
TGCAATGGACAGTGCCGCTTCCAGGCACCGTGGAGACGTGGAACATCAAC
GGTCTCGACACGGAAAGCGCTGATACGTATTACCGAAAGGCGTACGAAAA
GATTGCATACTCAACTCCCGCTCGTCCACTGCAGTACGCTCAGGACTATA
TCGACGCAAGCAATCGCGCCGGTTTTGAACGGAATGACGACCCTTTTCAA
CAGCCACCGAGATCCGCATGGCAGAACTTTATGAACATCAACGACGAGTT
TCGCCGCAACGACGCATGCGCTGCGTATTTAGAACCGGTTCGAGAAACGT
TTTGCGCGCAGAATCTGAAGCTCATGCAGTCGCAGACAGCCTCTAAAATT
ATGTTTTCTCGCGTTAAACGGGATGGAAGACGCATCGCTGTGGCTGTCAA
GTCCATCGATTCGGTGAATCGAAACGTCACAATGATACACAAAGCTCGCC
GCCAGATCATACTTGCGGCCGGGCCATACGGTTCAGCTCAACTATTGCAG
TTGTCAGGAATTGGACCGAAAGCAACCCTAGACGCGGCCGGAATCGAACA
AGTGCTCGACCTGCCGGTGGGTGAACAATGTGTGGGGCGGGCCAATGCGG
CAGTTTCATCCACGTATACAGGCGTGCCTGACGAAGAAGTAAACAATGTA
ACATTGGTCAATTCTGCTCAGCAACGTGAAATTTGGGAGATGGGTATGGG
TGGAGTGTTGGGAACTCCAGTCACGGCTTCTAATGGACGTGTGGGAGAGG
ATGGTTACTTCAACTCTGCTTTTGTACCATTCTTCCCAGGGGCGCCTGAA
CTGCGAACAAATTGTTTCCACAACACGAACAATACGGGAACACTACGCAT
TCGAGATGCTGACCCGTTCAGCACGCCGAAGGTAAAGCTTAATTTGTTGC
GGGACGTTGAAGATGTTCGGCGGCTTCAAAGATGTTTGCAAAGCGCTATC
AACATTCACAACAGCTTTCCTGAAGAATTCAACATGACATTAACACAGCC
TGCTAACGGCATAGTGGATGAAGAATACATTCGTAGCACAGCAAACACGG
GCTCTCATTTCGTGGGATGCTGTGGTGTGGGCGACGTGCTTGACGGGGAT
CTCAGAGTGAAGGGCACTCTCGGGTTGAGAGTTGTGGACGCTTCGTCTCT
AAAAACCATGCCGCGCTCGTCGGGCCCGGCGGCTTCTGTGTTGATGCTCG
CCGAATACATGGCACGCGTAATTAGATCGGAGGCACCTGAGCACGGTCGT
GAACGTTGTTTCGGAAACTGCTCATGA
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