Gvermi11842.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11842.t1
Unique NameGvermi11842.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length234
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2232572..2233273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMM079CT
PFAMsGrp1_Fun34_YaaH
Max annot lvl2759|Eukaryota
KEGG koko:K07034
Evalue6.91e-17
EggNOG OGsCOG1584@1|root,2S8RE@2759|Eukaryota
DescriptionGPR1/FUN34/yaaH family
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11842Gvermi11842Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2232572..2233273 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11842.t1.stop1Gvermi11842.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2232572..2232574 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11842.t1.CDS1Gvermi11842.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2232572..2233273 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11842.t1.exon1Gvermi11842.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2232572..2233273 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11842.t1.start1Gvermi11842.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2233271..2233273 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11842.t1Gvermi11842.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2232572..2233273 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11842.t1 ID=Gvermi11842.t1|Name=Gvermi11842.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=234bp
MSTPPSTPPRTSYDKMLPSISKRLDSLEKALLPLPVTTKTFRPIANPAPL
GLLGFAAVSILAAIPKLEERADKVSKLIFVVAFFLGGLAQVIAALLEYAC
NNLHAASTFALFGLHWLGQAVYMMSKALNVSDEFMDFNAHDAAVYYTILT
VATVMLTVPTLKMNRVLTTALFFVIFAFGFDVPAAFGHVWAEKGSAVAAI
AASILAMYMAFVDLVNEAWGTELLTVFPVKHTM*
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spliced messenger RNA

>Gvermi11842.t1 ID=Gvermi11842.t1|Name=Gvermi11842.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=702bp|location=Sequence derived from alignment at ScGOVlb_3404:2232572..2233273- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTACTCCTCCCTCAACACCCCCGCGCACTTCGTACGACAAGATGCT
ACCATCCATCTCAAAGCGTCTTGATTCGCTGGAAAAGGCGCTGTTGCCGC
TGCCGGTAACCACCAAAACATTTCGACCCATTGCAAACCCCGCGCCGCTC
GGCCTGCTGGGTTTCGCCGCCGTTTCCATCCTCGCCGCCATTCCCAAGCT
GGAGGAACGCGCCGATAAAGTGAGCAAACTCATTTTCGTCGTAGCGTTCT
TCCTGGGAGGCCTCGCGCAGGTCATCGCCGCCCTCCTGGAATATGCATGC
AATAATCTGCACGCAGCCTCAACGTTTGCCTTGTTTGGGCTGCACTGGCT
GGGCCAGGCCGTCTACATGATGAGCAAAGCGCTGAATGTATCAGACGAAT
TTATGGACTTCAACGCGCACGATGCCGCCGTGTACTACACAATCCTCACC
GTGGCTACTGTGATGTTGACGGTGCCGACGCTGAAAATGAACCGCGTGTT
GACGACGGCGCTGTTTTTTGTTATCTTTGCGTTTGGCTTTGATGTGCCCG
CTGCGTTTGGACATGTTTGGGCCGAAAAAGGCTCTGCCGTGGCCGCTATT
GCCGCCTCGATTCTGGCCATGTACATGGCGTTTGTCGACTTGGTGAATGA
GGCATGGGGCACAGAGCTGCTCACCGTGTTCCCCGTGAAGCACACAATGT
GA
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protein sequence of Gvermi11842.t1

>Gvermi11842.t1 ID=Gvermi11842.t1|Name=Gvermi11842.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=234bp
MSTPPSTPPRTSYDKMLPSISKRLDSLEKALLPLPVTTKTFRPIANPAPL
GLLGFAAVSILAAIPKLEERADKVSKLIFVVAFFLGGLAQVIAALLEYAC
NNLHAASTFALFGLHWLGQAVYMMSKALNVSDEFMDFNAHDAAVYYTILT
VATVMLTVPTLKMNRVLTTALFFVIFAFGFDVPAAFGHVWAEKGSAVAAI
AASILAMYMAFVDLVNEAWGTELLTVFPVKHTM*
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mRNA from alignment at ScGOVlb_3404:2232572..2233273-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11842.t1 ID=Gvermi11842.t1|Name=Gvermi11842.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=702bp|location=Sequence derived from alignment at ScGOVlb_3404:2232572..2233273- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTACTCCTCCCTCAACACCCCCGCGCACTTCGTACGACAAGATGCT
ACCATCCATCTCAAAGCGTCTTGATTCGCTGGAAAAGGCGCTGTTGCCGC
TGCCGGTAACCACCAAAACATTTCGACCCATTGCAAACCCCGCGCCGCTC
GGCCTGCTGGGTTTCGCCGCCGTTTCCATCCTCGCCGCCATTCCCAAGCT
GGAGGAACGCGCCGATAAAGTGAGCAAACTCATTTTCGTCGTAGCGTTCT
TCCTGGGAGGCCTCGCGCAGGTCATCGCCGCCCTCCTGGAATATGCATGC
AATAATCTGCACGCAGCCTCAACGTTTGCCTTGTTTGGGCTGCACTGGCT
GGGCCAGGCCGTCTACATGATGAGCAAAGCGCTGAATGTATCAGACGAAT
TTATGGACTTCAACGCGCACGATGCCGCCGTGTACTACACAATCCTCACC
GTGGCTACTGTGATGTTGACGGTGCCGACGCTGAAAATGAACCGCGTGTT
GACGACGGCGCTGTTTTTTGTTATCTTTGCGTTTGGCTTTGATGTGCCCG
CTGCGTTTGGACATGTTTGGGCCGAAAAAGGCTCTGCCGTGGCCGCTATT
GCCGCCTCGATTCTGGCCATGTACATGGCGTTTGTCGACTTGGTGAATGA
GGCATGGGGCACAGAGCTGCTCACCGTGTTCCCCGTGAAGCACACAATGT
GA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:2232572..2233273-

>Gvermi11842.t1 ID=Gvermi11842.t1|Name=Gvermi11842.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=702bp|location=Sequence derived from alignment at ScGOVlb_3404:2232572..2233273- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTACTCCTCCCTCAACACCCCCGCGCACTTCGTACGACAAGATGCT
ACCATCCATCTCAAAGCGTCTTGATTCGCTGGAAAAGGCGCTGTTGCCGC
TGCCGGTAACCACCAAAACATTTCGACCCATTGCAAACCCCGCGCCGCTC
GGCCTGCTGGGTTTCGCCGCCGTTTCCATCCTCGCCGCCATTCCCAAGCT
GGAGGAACGCGCCGATAAAGTGAGCAAACTCATTTTCGTCGTAGCGTTCT
TCCTGGGAGGCCTCGCGCAGGTCATCGCCGCCCTCCTGGAATATGCATGC
AATAATCTGCACGCAGCCTCAACGTTTGCCTTGTTTGGGCTGCACTGGCT
GGGCCAGGCCGTCTACATGATGAGCAAAGCGCTGAATGTATCAGACGAAT
TTATGGACTTCAACGCGCACGATGCCGCCGTGTACTACACAATCCTCACC
GTGGCTACTGTGATGTTGACGGTGCCGACGCTGAAAATGAACCGCGTGTT
GACGACGGCGCTGTTTTTTGTTATCTTTGCGTTTGGCTTTGATGTGCCCG
CTGCGTTTGGACATGTTTGGGCCGAAAAAGGCTCTGCCGTGGCCGCTATT
GCCGCCTCGATTCTGGCCATGTACATGGCGTTTGTCGACTTGGTGAATGA
GGCATGGGGCACAGAGCTGCTCACCGTGTTCCCCGTGAAGCACACAATGT
GA
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