Gvermi11840.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11840.t1
Unique NameGvermi11840.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length340
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:2223553..2224572 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1161401.ASJA01000006_gene1895
PFAMsPeptidase_S58
Max annot lvl28211|Alphaproteobacteria
Evalue2.41e-109
EggNOG OGsCOG3191@1|root,COG3191@2|Bacteria,1MWDP@1224|Proteobacteria,2TRDC@28211|Alphaproteobacteria,43WBS@69657|Hyphomonadaceae
DescriptionCOG3191 L-aminopeptidase D-esterase
COG categoryEQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11840Gvermi11840Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 2223553..2224572 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11840.t1.stop1Gvermi11840.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 2223553..2223555 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11840.t1.CDS1Gvermi11840.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 2223553..2224572 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11840.t1.exon1Gvermi11840.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 2223553..2224572 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11840.t1.start1Gvermi11840.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 2224570..2224572 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11840.t1Gvermi11840.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 2223553..2224572 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11840.t1 ID=Gvermi11840.t1|Name=Gvermi11840.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=340bp
MSSPQRNLITDVPGLIVGNAEDSNVLTGVTVLIPVGRKMMAAADVRGGAP
GSRDIPALQSSCTVEGVHGLVLAGGSVFGLDAAGGVIDALAKKGVGFTFG
KLPWPCPVVPSAVLFDLANGGDKRWGETSPYRALGAAAFKAAAKDFRLGN
SGAGMGATAGQLKGGLGSASMKVGSYTVGALVAVNSFGSVIDPRSNTFWA
AMWEIGDEFGGARPSNAEKLAPLPSPLIGCKTEGLQKGANTTIAIVATDA
MLTKAEAQRLAIMATDGMSRAIRPLHTPYDGDIVFAVSTASKELAAPTAL
SLANLGSAAADTLTRAIARGVYEADAVGAHQTWRKLRGE*
back to top

spliced messenger RNA

>Gvermi11840.t1 ID=Gvermi11840.t1|Name=Gvermi11840.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1020bp|location=Sequence derived from alignment at ScGOVlb_3404:2223553..2224572- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTCCCCACAGAGAAACCTGATCACGGATGTGCCAGGCTTGATAGT
CGGAAACGCTGAGGACAGTAATGTGCTGACCGGCGTTACTGTACTCATCC
CCGTTGGCAGGAAGATGATGGCCGCGGCCGACGTTCGCGGCGGAGCTCCT
GGTAGTCGTGACATCCCCGCGCTACAGTCTTCGTGTACAGTCGAGGGCGT
CCACGGACTTGTGCTTGCCGGCGGCTCTGTGTTTGGCCTCGATGCCGCCG
GTGGCGTCATCGATGCGCTGGCAAAGAAAGGCGTTGGTTTCACTTTTGGC
AAGCTGCCCTGGCCTTGTCCAGTAGTCCCCTCGGCAGTTCTGTTCGATTT
GGCAAACGGAGGTGACAAGCGTTGGGGTGAAACGTCGCCCTACCGAGCTC
TTGGCGCCGCCGCTTTCAAGGCAGCAGCCAAGGATTTTCGACTTGGGAAC
AGCGGAGCGGGCATGGGCGCCACAGCCGGACAGTTGAAGGGCGGCCTCGG
GAGCGCCTCGATGAAAGTGGGCAGTTACACTGTTGGTGCTCTTGTCGCAG
TCAACAGCTTTGGCTCGGTAATTGACCCGCGCAGCAACACCTTCTGGGCT
GCCATGTGGGAAATTGGTGACGAGTTCGGCGGCGCACGTCCATCAAACGC
AGAGAAACTGGCGCCATTGCCGTCGCCGCTCATCGGTTGCAAGACGGAAG
GTTTACAGAAAGGCGCAAACACCACTATCGCCATTGTCGCCACGGACGCG
ATGCTTACTAAAGCCGAAGCACAACGCTTGGCTATCATGGCCACGGATGG
TATGTCTCGCGCCATTCGCCCACTGCACACCCCTTACGATGGAGATATTG
TGTTTGCCGTGTCGACGGCAAGTAAAGAACTCGCAGCACCAACCGCGCTC
TCATTAGCAAACCTTGGTTCCGCCGCCGCCGACACTCTTACGAGAGCCAT
TGCGCGTGGCGTCTACGAAGCAGATGCGGTCGGAGCTCACCAAACTTGGC
GTAAGCTTCGTGGCGAATAA
back to top

protein sequence of Gvermi11840.t1

>Gvermi11840.t1 ID=Gvermi11840.t1|Name=Gvermi11840.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=340bp
MSSPQRNLITDVPGLIVGNAEDSNVLTGVTVLIPVGRKMMAAADVRGGAP
GSRDIPALQSSCTVEGVHGLVLAGGSVFGLDAAGGVIDALAKKGVGFTFG
KLPWPCPVVPSAVLFDLANGGDKRWGETSPYRALGAAAFKAAAKDFRLGN
SGAGMGATAGQLKGGLGSASMKVGSYTVGALVAVNSFGSVIDPRSNTFWA
AMWEIGDEFGGARPSNAEKLAPLPSPLIGCKTEGLQKGANTTIAIVATDA
MLTKAEAQRLAIMATDGMSRAIRPLHTPYDGDIVFAVSTASKELAAPTAL
SLANLGSAAADTLTRAIARGVYEADAVGAHQTWRKLRGE*
back to top

mRNA from alignment at ScGOVlb_3404:2223553..2224572-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11840.t1 ID=Gvermi11840.t1|Name=Gvermi11840.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1020bp|location=Sequence derived from alignment at ScGOVlb_3404:2223553..2224572- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCTCCCCACAGAGAAACCTGATCACGGATGTGCCAGGCTTGATAGT
CGGAAACGCTGAGGACAGTAATGTGCTGACCGGCGTTACTGTACTCATCC
CCGTTGGCAGGAAGATGATGGCCGCGGCCGACGTTCGCGGCGGAGCTCCT
GGTAGTCGTGACATCCCCGCGCTACAGTCTTCGTGTACAGTCGAGGGCGT
CCACGGACTTGTGCTTGCCGGCGGCTCTGTGTTTGGCCTCGATGCCGCCG
GTGGCGTCATCGATGCGCTGGCAAAGAAAGGCGTTGGTTTCACTTTTGGC
AAGCTGCCCTGGCCTTGTCCAGTAGTCCCCTCGGCAGTTCTGTTCGATTT
GGCAAACGGAGGTGACAAGCGTTGGGGTGAAACGTCGCCCTACCGAGCTC
TTGGCGCCGCCGCTTTCAAGGCAGCAGCCAAGGATTTTCGACTTGGGAAC
AGCGGAGCGGGCATGGGCGCCACAGCCGGACAGTTGAAGGGCGGCCTCGG
GAGCGCCTCGATGAAAGTGGGCAGTTACACTGTTGGTGCTCTTGTCGCAG
TCAACAGCTTTGGCTCGGTAATTGACCCGCGCAGCAACACCTTCTGGGCT
GCCATGTGGGAAATTGGTGACGAGTTCGGCGGCGCACGTCCATCAAACGC
AGAGAAACTGGCGCCATTGCCGTCGCCGCTCATCGGTTGCAAGACGGAAG
GTTTACAGAAAGGCGCAAACACCACTATCGCCATTGTCGCCACGGACGCG
ATGCTTACTAAAGCCGAAGCACAACGCTTGGCTATCATGGCCACGGATGG
TATGTCTCGCGCCATTCGCCCACTGCACACCCCTTACGATGGAGATATTG
TGTTTGCCGTGTCGACGGCAAGTAAAGAACTCGCAGCACCAACCGCGCTC
TCATTAGCAAACCTTGGTTCCGCCGCCGCCGACACTCTTACGAGAGCCAT
TGCGCGTGGCGTCTACGAAGCAGATGCGGTCGGAGCTCACCAAACTTGGC
GTAAGCTTCGTGGCGAATAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:2223553..2224572-

>Gvermi11840.t1 ID=Gvermi11840.t1|Name=Gvermi11840.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1020bp|location=Sequence derived from alignment at ScGOVlb_3404:2223553..2224572- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCTCCCCACAGAGAAACCTGATCACGGATGTGCCAGGCTTGATAGT
CGGAAACGCTGAGGACAGTAATGTGCTGACCGGCGTTACTGTACTCATCC
CCGTTGGCAGGAAGATGATGGCCGCGGCCGACGTTCGCGGCGGAGCTCCT
GGTAGTCGTGACATCCCCGCGCTACAGTCTTCGTGTACAGTCGAGGGCGT
CCACGGACTTGTGCTTGCCGGCGGCTCTGTGTTTGGCCTCGATGCCGCCG
GTGGCGTCATCGATGCGCTGGCAAAGAAAGGCGTTGGTTTCACTTTTGGC
AAGCTGCCCTGGCCTTGTCCAGTAGTCCCCTCGGCAGTTCTGTTCGATTT
GGCAAACGGAGGTGACAAGCGTTGGGGTGAAACGTCGCCCTACCGAGCTC
TTGGCGCCGCCGCTTTCAAGGCAGCAGCCAAGGATTTTCGACTTGGGAAC
AGCGGAGCGGGCATGGGCGCCACAGCCGGACAGTTGAAGGGCGGCCTCGG
GAGCGCCTCGATGAAAGTGGGCAGTTACACTGTTGGTGCTCTTGTCGCAG
TCAACAGCTTTGGCTCGGTAATTGACCCGCGCAGCAACACCTTCTGGGCT
GCCATGTGGGAAATTGGTGACGAGTTCGGCGGCGCACGTCCATCAAACGC
AGAGAAACTGGCGCCATTGCCGTCGCCGCTCATCGGTTGCAAGACGGAAG
GTTTACAGAAAGGCGCAAACACCACTATCGCCATTGTCGCCACGGACGCG
ATGCTTACTAAAGCCGAAGCACAACGCTTGGCTATCATGGCCACGGATGG
TATGTCTCGCGCCATTCGCCCACTGCACACCCCTTACGATGGAGATATTG
TGTTTGCCGTGTCGACGGCAAGTAAAGAACTCGCAGCACCAACCGCGCTC
TCATTAGCAAACCTTGGTTCCGCCGCCGCCGACACTCTTACGAGAGCCAT
TGCGCGTGGCGTCTACGAAGCAGATGCGGTCGGAGCTCACCAAACTTGGC
GTAAGCTTCGTGGCGAATAA
back to top